rna7755, rna7755 (mRNA) Nannochloropsis gaditana

Overview
Namerna7755
Unique Namerna7755
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1401
Alignment locationCM002473.1:280370..282226 +

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Properties
Property NameValue
ProductPentatricopeptide repeat containing protein
Orig transcript idgnl|cribi|Naga_101189g1.3554.mrna
Orig protein idgnl|cribi|Naga_101189g1.3554
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:280370..282226 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101189g1gene7509Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7755rna7755-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22939.1cds7734Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7755 ID=rna7755|Name=rna7755|organism=Nannochloropsis gaditana|type=mRNA|length=1401bp
ATGGGGAACACGTGCACGCGCCTGGACACACGGTCGATACATGAGGCCGG
CCCCTCCAGCTCCGACGACCCTGGGAGAAGGCCTCCCCGGGCAGAACCCT
CTTTAACCCTCGCCCCCGGGGCTTCTGCCGATGCCAGTGAGGTTGTGCCT
CCTCGTTCCGAGCCTGCCAATGCGCAGCTCCCCTCTTCCCCCCTTCCCTC
CATTGCCTCTTCCTCCCTTCCCCTTTCTACGTCCCCCCATTTGACAGAGG
AGCAGAAAGAGCACTGGAAGATTTTCAACGAACTGGACAGCCAAGATGAG
GCGGACGTCATGGCCCTCTCCTCTTTCTTTCAAATCTTGTGCCGTACGGC
CTCTGCCGCCAATTCACAAGCCTTGTTTCCCCCCATGGAAGAAAGTCGAT
CGCAGCGACTACTGGGCTTGGCTCGCGGCCATGGAACGGGGGGAGGAAAA
GGGAGGAAAGGATTCGGGCCAGGAAGGGGGTGGGGCGGTTTGTCGGACTT
CAAGGTCCAGCACGTGGGCCGCATCGACAGCAATCTGCATGATTTGGGTG
ATTTTCAAATACCCGCAAAACAACGCCTGAACATGGACGTGGCCCTGGAC
GTGATAGACTGTTTCCGACGCGGGGGAAAACTGCACCGGGATTCAGTCCA
CAAGATTTTAAAAAGCAGTTACTGGCTGTTGAAGAAATTCGAAAACGTCC
GAGCCGTTACCCTCCCGACGTTGACGGAGCCCCCCGCCCAGTCACCGGGC
CGGGAGCGTCGTTGCAGCGGTACGGGCATGGAAAGAACGGAGGAAGCTCA
AGGAGGAGGGGCGCCCGCGAACAGGAAGTCATGGGGCCAGAGAGGACGAC
TGAGCAGCCGCATCAGTCGGACCAGTCTGAGCCGAAGCTGGTGGGGTAGG
GGGGAGGGGGAGGAGGCGGCGGAGGAAGAGGAGGCGAGCACGCTGGTCGT
TTGCGGGGACCTCCACGGCCAGTTTTTCGACCTCCTCTACGTCCTGGACG
TGAACGGCCCCCCCAGCTCCCGGACCCGCTACCTCTTCAACGGAGATTTT
GTGGACCGAGGGCTGCAGTCGGTGGAGGTGATGTTGACGCTTCTAGCCCT
CCAGGTGGCGGCGCCGGAATGGGTCTTCTTGAACCGAGGGAACCACGAGG
ACCTGGGCGTCTGTTGCCTTTTCGGTTTCATGCGCGAATGCCTGAACAAG
TACGACGAGACCACCTTCGCCATGTTTGTGGAGGTTTTCCGTTACCTGCC
CTTAGCGACCACGATTAACGGACAGGTCCTGGTGCTGCACGGGGGCTTGT
TCTCGACCCCGGGCGTCTCCATGGAGGACCTCCAGGCCGCCCCGCGGCAC
GAGTACGGCCAAGGCTTGGGCTTGGGTCCGAAGGAGGGAGGGGAGGAGGG
A
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protein sequence of rna7755

>rna7755-protein ID=rna7755-protein|Name=rna7755|organism=Nannochloropsis gaditana|type=polypeptide|length=245bp
MGPRGLSPLTRSGPTSPPASPPSRLFAQALTRPAESTDQGTRVLAELKSA
AQAGDSAKALDLLKSLDDAAVPKTVVHFNRALKACVQGKALDQLPGVLEQ
MNASGTAWDETTVKLLVSTYAEQGKLAEALDVFEQAREDELIGTVDRALY
DVVIGAYRRTDALEKAMDLCDEMRSLRLAPTKEGYAFIATVAVRDGKTYL
IARTLETMRAEGFEEGEVAYVQKVIEEELPEGLKHQVGGKVVAPA
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mRNA from alignment at CM002473.1:280370..282226+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7755 ID=rna7755|Name=rna7755|organism=Nannochloropsis gaditana|type=mRNA|length=1857bp|location=Sequence derived from alignment at CM002473.1:280370..282226+ (Nannochloropsis gaditana)
TCCCAAGGATCTTTAGTGTGGACGACATGCAATTCTCATGTTTTCTTGTA
TGTTTATTTGCTACGATGGAAGGTAGTGTGTCGAAAGACCCtgttggggg
aggaagagccccTAGCGACAACGTGTTGTGTTGTCTGCAAGCTTGcagct
cccacgcccctccgcATGAGTACATGGGGAATTTCAGCATGTCACACGTC
TTTGTTCGGTTTTGATACGTCGTTCAATTTCTTTGCACGCTCATTTAAGA
GATCTTTCCTTCAGTACAGGTTTATTTGCTCAAGAGTCTACTTTCCCTTC
CACAAGATACTTCACGCCACAAgaatgcagcagcagcggttGGTTACAAT
TCTGGGCTGCTTGTCAGTGTTGATAGGCGGAAGCAGTGTACGTACACGTT
TGGAAGATGCTATATATGAGGTGGTAGATGCATGCTCGTTTCAGATGGTT
GTAATTTCAGGaagcgggtggggggggcccTCCCCTTCAATGGCGTCCAG
GGActgctcgctttcctcttcttccctttcttcgaaTGACTGTGGACAGA
TACATGAcacgctttcctcttcgaaCTGCGTTGAGTCCTGACGCGCAGTT
GCAGTGCCCAGCTTCTTACcgacttccctcctttcctccctccctctttc
cctccctccctttttttagACGGTTTTGGGCTTCGTATGGGCCCCCGGGG
CCTCTCCCCTCTAACACGCAGCggcccaacctcccctcccgcctcccctc
cctcccgccttttcGCTCAAGCCCTGACTCGGCCTGCGGAGAGCACGGAC
CAGGGGACGCGCGTGCTGGCGGAGTTGAAAAGCGCGGCGCAAGCCGGCGA
TAGCGCCAAGGCCTTGGACCTGCTCAAGTCGCTGGACGATGCCGCCGTGC
CTAAGACCGTGGTGCACTTCAACCGCGCCCTTAAGGCCTGCGTGCAGGGG
AAGGCGCTGGACCAGCTACCGGGGGTGTTGGAGCAAATGAACGCGAGCGG
GACGGCGTGGGACGAGACGACCGTCAAGCTCTTGGTGAGCACCTATGCCG
AGCAAGGAAAGttggcggaggccctggacgTGTTCGAGCAGGTAGGgcac
gggaaggagggagggagggagggagggagggagggagggagggaggatcg
ggAGTCCTGGCCGAGTGcgctcccccttcctccctctccttgcggtcaca
tcctttccctccgctcGCTTCCTtgcacccccctcccttctaaccccccc
ttcccctccccccgccctccccctccaggcccgGGAGGACGAGTTGATCG
GCACGGTGGACCGGGCTTTGTACGACGTGGTGATCGGCGCCTATCGCCGA
ACGGACGCCCtcgagaaggcgatggacTTGTGCGACGAGATGCGGTCCCT
GCGCCTAGCCCCGACCAAGGAGGGGTATGCCTTCATTGCCACGGTGGCGG
TGCGGGACGGGAAGACCTACTTGATCGCCCGGACCCTGGAGACGATGCGG
GCGGAAGGTttcgaggagggggaggtagcgTACGTGCAGAAAgtgatcga
ggaggagctcccAGAGGGACTCAAGCATcaggtgggggggaaggtggtgg
cgccAGCAtgaggagagaaggcgagccgggggggggaaggagggaaaggg
agggacggaggaagtgATGCAGGGCATCACTTATTTTATATATagacgag
ggagggttcaggcgggaagggaggcggcacTCGGTGGCGatgagtgagga
gggaggaagggcgggaaggagggaaggagggaaggagggaaggaagaaag
gaggacttGTGTGTCAGACGGGCGTGAGGGGGTTGCGTGTGTAGGAgata
gaggaag
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Coding sequence (CDS) from alignment at CM002473.1:280370..282226+

>rna7755 ID=rna7755|Name=rna7755|organism=Nannochloropsis gaditana|type=CDS|length=1476bp|location=Sequence derived from alignment at CM002473.1:280370..282226+ (Nannochloropsis gaditana)
ATGGGCCCCCGGGGCCTCTCCCCTCTAACACGCAGCggcccaacctcccc
tcccgcctcccctccctcccgccttttcGCTCAAGCCCTGACTCGGCCTG
CGGAGAGCACGGACCAGGGGACGCGCGTGCTGGCGGAGTTGAAAAGCGCG
GCGCAAGCCGGCGATAGCGCCAAGGCCTTGGACCTGCTCAAGTCGCTGGA
CGATGCCGCCGTGCCTAAGACCGTGGTGCACTTCAACCGCGCCCTTAAGG
CCTGCGTGCAGGGGAAGGCGCTGGACCAGCTACCGGGGGTGTTGGAGCAA
ATGAACGCGAGCGGGACGGCGTGGGACGAGACGACCGTCAAGCTCTTGGT
GAGCACCTATGCCGAGCAAGGAAAGttggcggaggccctggacgTGTTCG
AGCAGgcccgGGAGGACGAGTTGATCGGCACGGTGGACCGGGCTTTGTAC
GACGTGGTGATCGGCGCCTATCGCCGAACGGACGCCCtcgagaaggcgat
ggacTTGTGCGACGAGATGCGGTCCCTGCGCCTAGCCCCGACCAAGGAGG
GGTATGCCTTCATTGCCACGGTGGCGGTGCGGGACGGGAAGACCTACTTG
ATCGCCCGGACCCTGGAGACGATGCGGGCGGAAGGTttcgaggaggggga
ggtagcgTACGTGCAGAAAgtgatcgaggaggagctcccAGAGGGACTCA
AGCATcaggtgggggggaaggtggtggcgccAGCAtgaATGGGCCCCCGG
GGCCTCTCCCCTCTAACACGCAGCggcccaacctcccctcccgcctcccc
tccctcccgccttttcGCTCAAGCCCTGACTCGGCCTGCGGAGAGCACGG
ACCAGGGGACGCGCGTGCTGGCGGAGTTGAAAAGCGCGGCGCAAGCCGGC
GATAGCGCCAAGGCCTTGGACCTGCTCAAGTCGCTGGACGATGCCGCCGT
GCCTAAGACCGTGGTGCACTTCAACCGCGCCCTTAAGGCCTGCGTGCAGG
GGAAGGCGCTGGACCAGCTACCGGGGGTGTTGGAGCAAATGAACGCGAGC
GGGACGGCGTGGGACGAGACGACCGTCAAGCTCTTGGTGAGCACCTATGC
CGAGCAAGGAAAGttggcggaggccctggacgTGTTCGAGCAGgcccgGG
AGGACGAGTTGATCGGCACGGTGGACCGGGCTTTGTACGACGTGGTGATC
GGCGCCTATCGCCGAACGGACGCCCtcgagaaggcgatggacTTGTGCGA
CGAGATGCGGTCCCTGCGCCTAGCCCCGACCAAGGAGGGGTATGCCTTCA
TTGCCACGGTGGCGGTGCGGGACGGGAAGACCTACTTGATCGCCCGGACC
CTGGAGACGATGCGGGCGGAAGGTttcgaggagggggaggtagcgTACGT
GCAGAAAgtgatcgaggaggagctcccAGAGGGACTCAAGCATcaggtgg
gggggaaggtggtggcgccAGCAtga
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Synonyms
Publications