EWM22939.1, cds7734 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22939.1 vs. NCBI_GenBank
Match: gi|585103663|gb|EWM22939.1| (Pentatricopeptide repeat containing protein [Nannochloropsis gaditana]) HSP 1 Score: 493.041 bits (1268), Expect = 2.829e-176 Identity = 245/245 (100.00%), Postives = 245/245 (100.00%), Query Frame = 0 Query: 1 MGPRGLSPLTRSGPTSPPASPPSRLFAQALTRPAESTDQGTRVLAELKSAAQAGDSAKALDLLKSLDDAAVPKTVVHFNRALKACVQGKALDQLPGVLEQMNASGTAWDETTVKLLVSTYAEQGKLAEALDVFEQAREDELIGTVDRALYDVVIGAYRRTDALEKAMDLCDEMRSLRLAPTKEGYAFIATVAVRDGKTYLIARTLETMRAEGFEEGEVAYVQKVIEEELPEGLKHQVGGKVVAPA 245 MGPRGLSPLTRSGPTSPPASPPSRLFAQALTRPAESTDQGTRVLAELKSAAQAGDSAKALDLLKSLDDAAVPKTVVHFNRALKACVQGKALDQLPGVLEQMNASGTAWDETTVKLLVSTYAEQGKLAEALDVFEQAREDELIGTVDRALYDVVIGAYRRTDALEKAMDLCDEMRSLRLAPTKEGYAFIATVAVRDGKTYLIARTLETMRAEGFEEGEVAYVQKVIEEELPEGLKHQVGGKVVAPA Sbjct: 1 MGPRGLSPLTRSGPTSPPASPPSRLFAQALTRPAESTDQGTRVLAELKSAAQAGDSAKALDLLKSLDDAAVPKTVVHFNRALKACVQGKALDQLPGVLEQMNASGTAWDETTVKLLVSTYAEQGKLAEALDVFEQAREDELIGTVDRALYDVVIGAYRRTDALEKAMDLCDEMRSLRLAPTKEGYAFIATVAVRDGKTYLIARTLETMRAEGFEEGEVAYVQKVIEEELPEGLKHQVGGKVVAPA 245
BLAST of EWM22939.1 vs. NCBI_GenBank
Match: gi|731357321|ref|XP_010690143.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g51965, mitochondrial [Beta vulgaris subsp. vulgaris] >gi|870849507|gb|KMT01755.1| hypothetical protein BVRB_9g212040 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 70.4774 bits (171), Expect = 2.638e-10 Identity = 55/204 (26.96%), Postives = 89/204 (43.63%), Query Frame = 0 Query: 19 ASPPSRLFAQALTRPAESTDQGTR--VLAELKSAAQAGDSAKALDLLKSLDDAAVPKTVVHFNRALKACVQGKALDQLPGVLEQMNASGTAWDETTVKLLVSTYAEQGKLAEALDVFEQAREDELIGTVDRALYDVVIGAYRRTDALEKAMDLCDEMRSLRLAPTKEGYAFIATVAVRDGKTYLIARTLETMRAEGFEEGEVAY 220 AS RLF T D+G R ++ L+S AG ++ DLL + + + + +N L A + K + L + E+M G A D T +L+S++ GK+ EA+ +FEQ E + D Y+ +I + L++A EM L P Y+ + + K + +R E M A+G V Y Sbjct: 395 ASEAHRLFCTMWTLH----DKGDRDACMSMLESLCNAGKIVESFDLLDKIHEKGISSDTMMYNTVLSALGRSKQIPHLHDLYEKMKKDGPAPDIYTYNILISSFGRAGKVNEAVKIFEQLEESDC--RPDIVSYNSLINCLGKNGDLDEAHMRFSEMLEKGLNPDVVTYSTLIECFGKTDKVEMASRMFEDMVAQGCSPNIVTY 592
BLAST of EWM22939.1 vs. NCBI_GenBank
Match: gi|1175868823|ref|XP_020588124.1| (LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g51965, mitochondrial [Phalaenopsis equestris]) HSP 1 Score: 68.1662 bits (165), Expect = 1.498e-9 Identity = 55/222 (24.77%), Postives = 98/222 (44.14%), Query Frame = 0 Query: 1 MGPRGLSPLTRSGPTSPPASPPSRLFAQALTRPAESTDQGTR--VLAELKSAAQAGDSAKALDLLKSLDDAAVPKTVVHFNRALKACVQGKALDQLPGVLEQMNASGTAWDETTVKLLVSTYAEQGKLAEALDVFEQAREDELIGTVDRALYDVVIGAYRRTDALEKAMDLCDEMRSLRLAPTKEGYAFIATVAVRDGKTYLIARTLETMRAEGFEEGEVAY 220 M S L ++ S AS LF R D+G R ++ L++ AG + +A+DLL + + +P + +N A + K L + + E+M SG + D T +L+S++ + G + +AL++FE+ + + D Y+ +I + L++A EM+ L P Y+ + V+ K + + M AEG V Y Sbjct: 364 MNKSIYSYLVKALSKSGHASEAHSLFC----RMWNFHDEGDRDAFVSMLETLCNAGKTMEAIDLLNKIHEKGIPTDTMMYNIVFSALSKLKQLSYIQTLYEKMRDSGPSPDIFTYNILLSSFGKVGLVEKALELFEEMKSS--VCKPDVISYNSLINCLGKNGDLDEAHIRFKEMQKKGLNPDVFTYSTLIECFVKTNKVEMAFNLFDEMLAEGCHPNIVTY 579
BLAST of EWM22939.1 vs. NCBI_GenBank
Match: gi|1063494457|ref|XP_017983006.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g28050 isoform X2 [Theobroma cacao]) HSP 1 Score: 66.6254 bits (161), Expect = 1.804e-9 Identity = 43/179 (24.02%), Postives = 85/179 (47.49%), Query Frame = 0 Query: 42 RVLAELKSAAQAGDSAKALDLLKSLDDAAVPKTVVHFNRALKACVQGKALDQLPGVLEQMNASGTAWDETTVKLLVSTYAEQGKLAEALDVFEQAREDELIGTVDRALYDVVIGAYRRTDALEKAMDLCDEMRSLRLAPTKEGYAFIATVAVRDGKTYLIARTLETMRAEGFEEGEVAY 220 +V A + + GD K ++++ + D + V+ +N + AC + ++L VL M +G ++ T K L+ Y GK+ EA + + + L VD LY+++I Y + ++E + L D M + + P + Y + + G+ + + + M+ +GFE +V Y Sbjct: 2 KVSAVVDGLCRNGDVKKGREIVEEMADRGIKANVITYNIMIDACAKRWDFEELDLVLGLMEKAGVEFNVETFKFLIDGYTSYGKINEAGRLIGEMHDKGL--KVDTYLYNLMINGYCKLGSIENVLLLFDRMSNRGVKPNADTYWPLINGYSKVGEMEMAMKYVNEMQKKGFELDKVMY 178
BLAST of EWM22939.1 vs. NCBI_GenBank
Match: gi|951036654|ref|XP_014516678.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g18940, chloroplastic-like [Vigna radiata var. radiata]) HSP 1 Score: 66.6254 bits (161), Expect = 6.061e-9 Identity = 44/170 (25.88%), Postives = 79/170 (46.47%), Query Frame = 0 Query: 45 AELKSAAQAGDSAKALDLLKSLDDAAVPKTVVHFNRALKACVQGKALDQLPGVLEQMNASGTAWDETTVKLLVSTYAEQGKLAEALDVFEQAREDELIGTVDRALYDVVIGAYRRTDALEKAMDLCDEMRSLRLAPTKEGYAFIATVAVRDGKTYLIARTLETMRAEGFE 214 A L+ +AG +AL +LK ++D P V +N V+ LDQ V++ M + G + T +++ Y + G+ EAL +F Q + +L + Y+ ++ + E +++ EM+ APT+ + + V +GK + R L M+ GFE Sbjct: 325 AMLQVFGKAGIYTEALSILKEMEDNNCPLDSVTYNELAATYVRAGFLDQGKAVIDTMTSKGVMPNAITYTIVIDAYGKAGREDEALRLFSQMK--DLGCAPNVYTYNSILAMLGKKSRTEDVINVLCEMKLNGCAPTRATWNTMLAVCSEEGKHNHVNRVLREMKNSGFE 492
BLAST of EWM22939.1 vs. NCBI_GenBank
Match: gi|1098842037|ref|XP_018827741.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g02860 [Juglans regia]) HSP 1 Score: 65.855 bits (159), Expect = 8.699e-9 Identity = 45/156 (28.85%), Postives = 74/156 (47.44%), Query Frame = 0 Query: 58 KALDLLKSLDDAAVPKTVVHFNRALKACVQGKALDQLPGVLEQMNASGTAWDETTVKLLVSTYAEQGKLAEALDVFEQAREDELIG-TVDRALYDVVIGAYRRTDALEKAMDLCDEMRSLRLAPTKEGYAFIATVAVRDGKTYLIARTLETMRAEG 212 K LDL+ S+ A V + +N + C +G ++ G+ E+M ++G D+ T L+ Y + EA++V RE E+ G + Y+ +I AY R L++AMDL +M + P Y + + + GK R E MR+ G Sbjct: 261 KILDLVASMKSAGVYPDLYTYNTLISCCRRGSLYEEAAGIFEEMKSAGFTPDKVTYNALLDVYGKSRWPKEAMEVL---REMEISGFSPSVVTYNSLISAYARDGLLDEAMDLKTQMMEKGIKPDVFTYTTLLSGFEKAGKDESAMRVFEEMRSAG 413
BLAST of EWM22939.1 vs. NCBI_GenBank
Match: gi|965610758|dbj|BAT96897.1| (hypothetical protein VIGAN_09021400 [Vigna angularis var. angularis]) HSP 1 Score: 65.855 bits (159), Expect = 1.022e-8 Identity = 44/171 (25.73%), Postives = 78/171 (45.61%), Query Frame = 0 Query: 45 AELKSAAQAGDSAKALDLLKSLDDAAVPKTVVHFNRALKACVQGKALDQLPGVLEQMNASGTAWDETTVKLLVSTYAEQGKLAEALDVFEQAREDELIGTVDRAL-YDVVIGAYRRTDALEKAMDLCDEMRSLRLAPTKEGYAFIATVAVRDGKTYLIARTLETMRAEGFE 214 A L+ +AG +AL +LK ++D P V +N V+ LDQ V+ M + G + T +++ Y + G+ EAL +F Q ++ +G Y+ ++ + E +++ EM+ APT+ + + V +GK + R L M+ GFE Sbjct: 325 AMLQVFGKAGIYTEALSILKEMEDNNCPLDSVTYNELAATYVRAGFLDQGKAVIGTMTSKGVMPNAITYTIVIDAYGKAGREDEALRLFSQMKD---LGCAPNVFTYNSILAMLGKKSRTEDVINVLCEMKLNGCAPTRATWNTMLAVCSEEGKHNHVNRVLREMKNSGFE 492
BLAST of EWM22939.1 vs. NCBI_GenBank
Match: gi|1040903528|ref|XP_017214868.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g18940, chloroplastic [Daucus carota subsp. sativus] >gi|1021034723|gb|KZM92507.1| hypothetical protein DCAR_020128 [Daucus carota subsp. sativus]) HSP 1 Score: 65.855 bits (159), Expect = 1.068e-8 Identity = 39/175 (22.29%), Postives = 84/175 (48.00%), Query Frame = 0 Query: 47 LKSAAQAGDSAKALDLLKSLDDAAVPKTVVHFNRALKACVQGKALDQLPGVLEQMNASGTAWDETTVKLLVSTYAEQGKLAEALDVFEQAREDELIGTVDRALYDVVIGAYRRTDALEKAMDLCDEMRSLRLAPTKEGYAFIATVAVRDGKTYLIARTLETMRAEGFEEGEVAYV 221 L+ +AG ++A+ +LK +++ P V +N + A V+ ++ ++++M G + T ++ Y + GK+ +AL +F+Q ++ + V Y+ ++ + E M+L +M+S + P + + + V G ++R L MR+ GFE G ++ Sbjct: 350 LQVYGKAGLYSEAISVLKEMEENNCPPDSVTYNELVAAYVRAGFTEEGAAIIDKMPQKGVLPNAITYTTVIDAYGKAGKVDKALSLFKQMKKSGCVPNV--CTYNAILAMLGKKSRSEDMMELLCDMKSYKCTPNRITWNTMLAVCGNKGMHIYMSRVLREMRSCGFEPGRDTFI 522
BLAST of EWM22939.1 vs. NCBI_GenBank
Match: gi|1012110768|ref|XP_015959916.1| (pentatricopeptide repeat-containing protein At2g18940, chloroplastic [Arachis duranensis]) HSP 1 Score: 65.855 bits (159), Expect = 1.081e-8 Identity = 48/171 (28.07%), Postives = 81/171 (47.37%), Query Frame = 0 Query: 47 LKSAAQAGDSAKALDLLKSLDDAAVPKTVVHFNRALKACVQGKALDQLPGVLEQMNASGTAWDETTVKLLVSTYAEQGKLAEALDVFEQAREDELIGTVDRALYDVV---IGAYRRTDALEKAMDLCDEMRSLRLAPTKEGYAFIATVAVRDGKTYLIARTLETMRAEGFE 214 L+ +AG A+AL +LK ++D P V +N + A V+ LD+ GV++ M + G + T +++ Y + G +AL +F Q +E + V Y+ V +G R+ + K CD M+ R AP + + + V GK + + L M+ GFE Sbjct: 327 LQVFGKAGVYAEALSILKEMEDNNCPPDAVTYNELVAAYVRAGFLDEGAGVIDTMTSGGVMPNAVTYTTIINAYGKAGNEDKALKLFAQMKESGCVPNV--CTYNAVLAMLGKKMRSKDMIKV--FCD-MKLNRCAPNRATWNTMLAVCGDKGKHNYVNQVLREMKNCGFE 492
BLAST of EWM22939.1 vs. NCBI_GenBank
Match: gi|950934085|ref|XP_014513529.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g18940, chloroplastic-like [Vigna radiata var. radiata]) HSP 1 Score: 65.4698 bits (158), Expect = 1.167e-8 Identity = 43/168 (25.60%), Postives = 77/168 (45.83%), Query Frame = 0 Query: 47 LKSAAQAGDSAKALDLLKSLDDAAVPKTVVHFNRALKACVQGKALDQLPGVLEQMNASGTAWDETTVKLLVSTYAEQGKLAEALDVFEQAREDELIGTVDRALYDVVIGAYRRTDALEKAMDLCDEMRSLRLAPTKEGYAFIATVAVRDGKTYLIARTLETMRAEGFE 214 L+ +AG +AL +LK ++D + P V +N V+ LDQ V++ M + G + T ++ Y + G+ EAL +F Q + +L + Y+ V+ + E +++ EM+ AP + + + V +GK + R L M+ GFE Sbjct: 332 LQVFGKAGIYTEALSILKEMEDNSCPPDAVTYNELAATYVRAGFLDQGKAVIDTMTSQGVMPNAITYTTVIDAYGKAGREDEALRLFSQMK--DLGCAPNVYTYNSVLAMLGKKSRTEDVINVLCEMKLNGCAPNRATWNTMLVVCSEEGKHNHVNRVLREMKNSGFE 497 The following BLAST results are available for this feature:
BLAST of EWM22939.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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