EWM22939.1, cds7734 (CDS) Nannochloropsis gaditana

Overview
NameEWM22939.1
Unique Namecds7734
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002473.1:281056..281460 +
Alignment locationCM002473.1:281648..281980 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22939.1
ProductPentatricopeptide repeat containing protein
Orig transcript idgnl|cribi|Naga_101189g1.3554.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:281056..281460 +
CM002473.1supercontigCM002473.1:281648..281980 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
Homology
BLAST of EWM22939.1 vs. NCBI_GenBank
Match: gi|585103663|gb|EWM22939.1| (Pentatricopeptide repeat containing protein [Nannochloropsis gaditana])

HSP 1 Score: 493.041 bits (1268), Expect = 2.829e-176
Identity = 245/245 (100.00%), Postives = 245/245 (100.00%), Query Frame = 0
Query:    1 MGPRGLSPLTRSGPTSPPASPPSRLFAQALTRPAESTDQGTRVLAELKSAAQAGDSAKALDLLKSLDDAAVPKTVVHFNRALKACVQGKALDQLPGVLEQMNASGTAWDETTVKLLVSTYAEQGKLAEALDVFEQAREDELIGTVDRALYDVVIGAYRRTDALEKAMDLCDEMRSLRLAPTKEGYAFIATVAVRDGKTYLIARTLETMRAEGFEEGEVAYVQKVIEEELPEGLKHQVGGKVVAPA 245
            MGPRGLSPLTRSGPTSPPASPPSRLFAQALTRPAESTDQGTRVLAELKSAAQAGDSAKALDLLKSLDDAAVPKTVVHFNRALKACVQGKALDQLPGVLEQMNASGTAWDETTVKLLVSTYAEQGKLAEALDVFEQAREDELIGTVDRALYDVVIGAYRRTDALEKAMDLCDEMRSLRLAPTKEGYAFIATVAVRDGKTYLIARTLETMRAEGFEEGEVAYVQKVIEEELPEGLKHQVGGKVVAPA
Sbjct:    1 MGPRGLSPLTRSGPTSPPASPPSRLFAQALTRPAESTDQGTRVLAELKSAAQAGDSAKALDLLKSLDDAAVPKTVVHFNRALKACVQGKALDQLPGVLEQMNASGTAWDETTVKLLVSTYAEQGKLAEALDVFEQAREDELIGTVDRALYDVVIGAYRRTDALEKAMDLCDEMRSLRLAPTKEGYAFIATVAVRDGKTYLIARTLETMRAEGFEEGEVAYVQKVIEEELPEGLKHQVGGKVVAPA 245          
BLAST of EWM22939.1 vs. NCBI_GenBank
Match: gi|731357321|ref|XP_010690143.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g51965, mitochondrial [Beta vulgaris subsp. vulgaris] >gi|870849507|gb|KMT01755.1| hypothetical protein BVRB_9g212040 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 70.4774 bits (171), Expect = 2.638e-10
Identity = 55/204 (26.96%), Postives = 89/204 (43.63%), Query Frame = 0
Query:   19 ASPPSRLFAQALTRPAESTDQGTR--VLAELKSAAQAGDSAKALDLLKSLDDAAVPKTVVHFNRALKACVQGKALDQLPGVLEQMNASGTAWDETTVKLLVSTYAEQGKLAEALDVFEQAREDELIGTVDRALYDVVIGAYRRTDALEKAMDLCDEMRSLRLAPTKEGYAFIATVAVRDGKTYLIARTLETMRAEGFEEGEVAY 220
            AS   RLF    T      D+G R   ++ L+S   AG   ++ DLL  + +  +    + +N  L A  + K +  L  + E+M   G A D  T  +L+S++   GK+ EA+ +FEQ  E +     D   Y+ +I    +   L++A     EM    L P    Y+ +     +  K  + +R  E M A+G     V Y
Sbjct:  395 ASEAHRLFCTMWTLH----DKGDRDACMSMLESLCNAGKIVESFDLLDKIHEKGISSDTMMYNTVLSALGRSKQIPHLHDLYEKMKKDGPAPDIYTYNILISSFGRAGKVNEAVKIFEQLEESDC--RPDIVSYNSLINCLGKNGDLDEAHMRFSEMLEKGLNPDVVTYSTLIECFGKTDKVEMASRMFEDMVAQGCSPNIVTY 592          
BLAST of EWM22939.1 vs. NCBI_GenBank
Match: gi|1175868823|ref|XP_020588124.1| (LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g51965, mitochondrial [Phalaenopsis equestris])

HSP 1 Score: 68.1662 bits (165), Expect = 1.498e-9
Identity = 55/222 (24.77%), Postives = 98/222 (44.14%), Query Frame = 0
Query:    1 MGPRGLSPLTRSGPTSPPASPPSRLFAQALTRPAESTDQGTR--VLAELKSAAQAGDSAKALDLLKSLDDAAVPKTVVHFNRALKACVQGKALDQLPGVLEQMNASGTAWDETTVKLLVSTYAEQGKLAEALDVFEQAREDELIGTVDRALYDVVIGAYRRTDALEKAMDLCDEMRSLRLAPTKEGYAFIATVAVRDGKTYLIARTLETMRAEGFEEGEVAY 220
            M     S L ++   S  AS    LF     R     D+G R   ++ L++   AG + +A+DLL  + +  +P   + +N    A  + K L  +  + E+M  SG + D  T  +L+S++ + G + +AL++FE+ +    +   D   Y+ +I    +   L++A     EM+   L P    Y+ +    V+  K  +     + M AEG     V Y
Sbjct:  364 MNKSIYSYLVKALSKSGHASEAHSLFC----RMWNFHDEGDRDAFVSMLETLCNAGKTMEAIDLLNKIHEKGIPTDTMMYNIVFSALSKLKQLSYIQTLYEKMRDSGPSPDIFTYNILLSSFGKVGLVEKALELFEEMKSS--VCKPDVISYNSLINCLGKNGDLDEAHIRFKEMQKKGLNPDVFTYSTLIECFVKTNKVEMAFNLFDEMLAEGCHPNIVTY 579          
BLAST of EWM22939.1 vs. NCBI_GenBank
Match: gi|1063494457|ref|XP_017983006.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g28050 isoform X2 [Theobroma cacao])

HSP 1 Score: 66.6254 bits (161), Expect = 1.804e-9
Identity = 43/179 (24.02%), Postives = 85/179 (47.49%), Query Frame = 0
Query:   42 RVLAELKSAAQAGDSAKALDLLKSLDDAAVPKTVVHFNRALKACVQGKALDQLPGVLEQMNASGTAWDETTVKLLVSTYAEQGKLAEALDVFEQAREDELIGTVDRALYDVVIGAYRRTDALEKAMDLCDEMRSLRLAPTKEGYAFIATVAVRDGKTYLIARTLETMRAEGFEEGEVAY 220
            +V A +    + GD  K  ++++ + D  +   V+ +N  + AC +    ++L  VL  M  +G  ++  T K L+  Y   GK+ EA  +  +  +  L   VD  LY+++I  Y +  ++E  + L D M +  + P  + Y  +     + G+  +  + +  M+ +GFE  +V Y
Sbjct:    2 KVSAVVDGLCRNGDVKKGREIVEEMADRGIKANVITYNIMIDACAKRWDFEELDLVLGLMEKAGVEFNVETFKFLIDGYTSYGKINEAGRLIGEMHDKGL--KVDTYLYNLMINGYCKLGSIENVLLLFDRMSNRGVKPNADTYWPLINGYSKVGEMEMAMKYVNEMQKKGFELDKVMY 178          
BLAST of EWM22939.1 vs. NCBI_GenBank
Match: gi|951036654|ref|XP_014516678.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g18940, chloroplastic-like [Vigna radiata var. radiata])

HSP 1 Score: 66.6254 bits (161), Expect = 6.061e-9
Identity = 44/170 (25.88%), Postives = 79/170 (46.47%), Query Frame = 0
Query:   45 AELKSAAQAGDSAKALDLLKSLDDAAVPKTVVHFNRALKACVQGKALDQLPGVLEQMNASGTAWDETTVKLLVSTYAEQGKLAEALDVFEQAREDELIGTVDRALYDVVIGAYRRTDALEKAMDLCDEMRSLRLAPTKEGYAFIATVAVRDGKTYLIARTLETMRAEGFE 214
            A L+   +AG   +AL +LK ++D   P   V +N      V+   LDQ   V++ M + G   +  T  +++  Y + G+  EAL +F Q +  +L    +   Y+ ++    +    E  +++  EM+    APT+  +  +  V   +GK   + R L  M+  GFE
Sbjct:  325 AMLQVFGKAGIYTEALSILKEMEDNNCPLDSVTYNELAATYVRAGFLDQGKAVIDTMTSKGVMPNAITYTIVIDAYGKAGREDEALRLFSQMK--DLGCAPNVYTYNSILAMLGKKSRTEDVINVLCEMKLNGCAPTRATWNTMLAVCSEEGKHNHVNRVLREMKNSGFE 492          
BLAST of EWM22939.1 vs. NCBI_GenBank
Match: gi|1098842037|ref|XP_018827741.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g02860 [Juglans regia])

HSP 1 Score: 65.855 bits (159), Expect = 8.699e-9
Identity = 45/156 (28.85%), Postives = 74/156 (47.44%), Query Frame = 0
Query:   58 KALDLLKSLDDAAVPKTVVHFNRALKACVQGKALDQLPGVLEQMNASGTAWDETTVKLLVSTYAEQGKLAEALDVFEQAREDELIG-TVDRALYDVVIGAYRRTDALEKAMDLCDEMRSLRLAPTKEGYAFIATVAVRDGKTYLIARTLETMRAEG 212
            K LDL+ S+  A V   +  +N  +  C +G   ++  G+ E+M ++G   D+ T   L+  Y +     EA++V    RE E+ G +     Y+ +I AY R   L++AMDL  +M    + P    Y  + +   + GK     R  E MR+ G
Sbjct:  261 KILDLVASMKSAGVYPDLYTYNTLISCCRRGSLYEEAAGIFEEMKSAGFTPDKVTYNALLDVYGKSRWPKEAMEVL---REMEISGFSPSVVTYNSLISAYARDGLLDEAMDLKTQMMEKGIKPDVFTYTTLLSGFEKAGKDESAMRVFEEMRSAG 413          
BLAST of EWM22939.1 vs. NCBI_GenBank
Match: gi|965610758|dbj|BAT96897.1| (hypothetical protein VIGAN_09021400 [Vigna angularis var. angularis])

HSP 1 Score: 65.855 bits (159), Expect = 1.022e-8
Identity = 44/171 (25.73%), Postives = 78/171 (45.61%), Query Frame = 0
Query:   45 AELKSAAQAGDSAKALDLLKSLDDAAVPKTVVHFNRALKACVQGKALDQLPGVLEQMNASGTAWDETTVKLLVSTYAEQGKLAEALDVFEQAREDELIGTVDRAL-YDVVIGAYRRTDALEKAMDLCDEMRSLRLAPTKEGYAFIATVAVRDGKTYLIARTLETMRAEGFE 214
            A L+   +AG   +AL +LK ++D   P   V +N      V+   LDQ   V+  M + G   +  T  +++  Y + G+  EAL +F Q ++   +G       Y+ ++    +    E  +++  EM+    APT+  +  +  V   +GK   + R L  M+  GFE
Sbjct:  325 AMLQVFGKAGIYTEALSILKEMEDNNCPLDSVTYNELAATYVRAGFLDQGKAVIGTMTSKGVMPNAITYTIVIDAYGKAGREDEALRLFSQMKD---LGCAPNVFTYNSILAMLGKKSRTEDVINVLCEMKLNGCAPTRATWNTMLAVCSEEGKHNHVNRVLREMKNSGFE 492          
BLAST of EWM22939.1 vs. NCBI_GenBank
Match: gi|1040903528|ref|XP_017214868.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g18940, chloroplastic [Daucus carota subsp. sativus] >gi|1021034723|gb|KZM92507.1| hypothetical protein DCAR_020128 [Daucus carota subsp. sativus])

HSP 1 Score: 65.855 bits (159), Expect = 1.068e-8
Identity = 39/175 (22.29%), Postives = 84/175 (48.00%), Query Frame = 0
Query:   47 LKSAAQAGDSAKALDLLKSLDDAAVPKTVVHFNRALKACVQGKALDQLPGVLEQMNASGTAWDETTVKLLVSTYAEQGKLAEALDVFEQAREDELIGTVDRALYDVVIGAYRRTDALEKAMDLCDEMRSLRLAPTKEGYAFIATVAVRDGKTYLIARTLETMRAEGFEEGEVAYV 221
            L+   +AG  ++A+ +LK +++   P   V +N  + A V+    ++   ++++M   G   +  T   ++  Y + GK+ +AL +F+Q ++   +  V    Y+ ++    +    E  M+L  +M+S +  P +  +  +  V    G    ++R L  MR+ GFE G   ++
Sbjct:  350 LQVYGKAGLYSEAISVLKEMEENNCPPDSVTYNELVAAYVRAGFTEEGAAIIDKMPQKGVLPNAITYTTVIDAYGKAGKVDKALSLFKQMKKSGCVPNV--CTYNAILAMLGKKSRSEDMMELLCDMKSYKCTPNRITWNTMLAVCGNKGMHIYMSRVLREMRSCGFEPGRDTFI 522          
BLAST of EWM22939.1 vs. NCBI_GenBank
Match: gi|1012110768|ref|XP_015959916.1| (pentatricopeptide repeat-containing protein At2g18940, chloroplastic [Arachis duranensis])

HSP 1 Score: 65.855 bits (159), Expect = 1.081e-8
Identity = 48/171 (28.07%), Postives = 81/171 (47.37%), Query Frame = 0
Query:   47 LKSAAQAGDSAKALDLLKSLDDAAVPKTVVHFNRALKACVQGKALDQLPGVLEQMNASGTAWDETTVKLLVSTYAEQGKLAEALDVFEQAREDELIGTVDRALYDVV---IGAYRRTDALEKAMDLCDEMRSLRLAPTKEGYAFIATVAVRDGKTYLIARTLETMRAEGFE 214
            L+   +AG  A+AL +LK ++D   P   V +N  + A V+   LD+  GV++ M + G   +  T   +++ Y + G   +AL +F Q +E   +  V    Y+ V   +G   R+  + K    CD M+  R AP +  +  +  V    GK   + + L  M+  GFE
Sbjct:  327 LQVFGKAGVYAEALSILKEMEDNNCPPDAVTYNELVAAYVRAGFLDEGAGVIDTMTSGGVMPNAVTYTTIINAYGKAGNEDKALKLFAQMKESGCVPNV--CTYNAVLAMLGKKMRSKDMIKV--FCD-MKLNRCAPNRATWNTMLAVCGDKGKHNYVNQVLREMKNCGFE 492          
BLAST of EWM22939.1 vs. NCBI_GenBank
Match: gi|950934085|ref|XP_014513529.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g18940, chloroplastic-like [Vigna radiata var. radiata])

HSP 1 Score: 65.4698 bits (158), Expect = 1.167e-8
Identity = 43/168 (25.60%), Postives = 77/168 (45.83%), Query Frame = 0
Query:   47 LKSAAQAGDSAKALDLLKSLDDAAVPKTVVHFNRALKACVQGKALDQLPGVLEQMNASGTAWDETTVKLLVSTYAEQGKLAEALDVFEQAREDELIGTVDRALYDVVIGAYRRTDALEKAMDLCDEMRSLRLAPTKEGYAFIATVAVRDGKTYLIARTLETMRAEGFE 214
            L+   +AG   +AL +LK ++D + P   V +N      V+   LDQ   V++ M + G   +  T   ++  Y + G+  EAL +F Q +  +L    +   Y+ V+    +    E  +++  EM+    AP +  +  +  V   +GK   + R L  M+  GFE
Sbjct:  332 LQVFGKAGIYTEALSILKEMEDNSCPPDAVTYNELAATYVRAGFLDQGKAVIDTMTSQGVMPNAITYTTVIDAYGKAGREDEALRLFSQMK--DLGCAPNVYTYNSVLAMLGKKSRTEDVINVLCEMKLNGCAPNRATWNTMLVVCSEEGKHNHVNRVLREMKNSGFE 497          
The following BLAST results are available for this feature:
BLAST of EWM22939.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103663|gb|EWM22939.1|2.829e-176100.00Pentatricopeptide repeat containing protein [Nanno... [more]
gi|731357321|ref|XP_010690143.1|2.638e-1026.96PREDICTED: pentatricopeptide repeat-containing pro... [more]
gi|1175868823|ref|XP_020588124.1|1.498e-924.77LOW QUALITY PROTEIN: pentatricopeptide repeat-cont... [more]
gi|1063494457|ref|XP_017983006.1|1.804e-924.02PREDICTED: pentatricopeptide repeat-containing pro... [more]
gi|951036654|ref|XP_014516678.1|6.061e-925.88PREDICTED: pentatricopeptide repeat-containing pro... [more]
gi|1098842037|ref|XP_018827741.1|8.699e-928.85PREDICTED: pentatricopeptide repeat-containing pro... [more]
gi|965610758|dbj|BAT96897.1|1.022e-825.73hypothetical protein VIGAN_09021400 [Vigna angular... [more]
gi|1040903528|ref|XP_017214868.1|1.068e-822.29PREDICTED: pentatricopeptide repeat-containing pro... [more]
gi|1012110768|ref|XP_015959916.1|1.081e-828.07pentatricopeptide repeat-containing protein At2g18... [more]
gi|950934085|ref|XP_014513529.1|1.167e-825.60PREDICTED: pentatricopeptide repeat-containing pro... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7755rna7755Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications