rna7744, rna7744 (mRNA) Nannochloropsis gaditana

Overview
Namerna7744
Unique Namerna7744
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3083
Alignment locationCM002473.1:230863..232663 +

Link to JBrowse

Properties
Property NameValue
ProductProtein of unknown function DUF2358
Orig transcript idgnl|cribi|Naga_100396g3.7451.mrna
Orig protein idgnl|cribi|Naga_100396g3.7451
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:230863..232663 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100396g3gene7498Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7744rna7744-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22953.1cds7723Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7744 ID=rna7744|Name=rna7744|organism=Nannochloropsis gaditana|type=mRNA|length=3083bp
TACGGCCTGTGAGGTGGCGGCTTGAAGGGATGGCGAGCCTCTCGGAAACG
TTCTGGGTGGCCGGGCTTGTCAACCTGCTCGACGCTCGCACTTAAGTTTC
CCGCGGCTGCACTTAGCAAGTCGTGAGTCGCTTCTCATGAGGGCATCCTT
TGTGATAACATCGCGTCGGATGTGAATACGGTATTCCACGCGTTACAAAA
AGAAAAAATCAAAAAATGCGTCGCGGGGTATTTAGTACGCTCTGTCTCCT
TCACAGTATCAAACATGTCGTGGCCTCAACCCTGGGGGCCGTTGGTTGTC
CATCCTGGAAACAATTGCACGTAGGCGCACCTCCACTGATATGTCAAACC
CAGACCCTATGCCGACTACGCCTTTCCCGTTGAGCAGCGGGCGCACGTGG
CATGCCGCTGCTGTGGCTGCGGCTGCTGCTGCCTCTGCCGCTGCTGCTGC
TGACCCGCTTGTATCAGCCAGGGAAGGGAAGGCTGGCGAGGATTCGGGAA
GTGGGTTGGTAGTCCATCACATTGTTCTGAGTGAATTCGACATCGTCACT
GGCTCGACTGTCCGGTACCAGTATCCTCGACCTGTGCCAGGCGAGTCGCC
GGACAGCCTGGCGGAGAAGATGCTGCCGGAGGGAGCACACAGCCACGCAG
AGAATGAAACCTGGTTTTTTTTCAACCGAGGGTCTTTGACGTGGGACGAG
CAGGAGGCGGCAGAGGAGGGGGGGCACACGACGGACGACAGGGCCGGAGA
AGAAAACGACCGTGTGGACGGGGAAAGCATGAACATTATTTCGCCAGCTC
CGCCGTTTCTTTACGGCTACAGCATTGTCAAGACCCAACGCGATCCCCAT
GCACGTCGGGGGGCTTGGGTGAAGGCGCTGGCATTGGTCTCCCCGCTGCC
CATTTTGGAGGCCCTCCGCCCGGCCATGGCCCTGGCTCTGGATGAATGCT
TCTCTCGGGACTCTCACCCTGCAACAGTACCCGCGCCACCACCCGAAGCG
CCCCCCCCCGCCCTCCCTCCCTCTTCTGGAGGCGAAGACGCCCTCCTCCA
GGTCATTCGCCGCCTCTTTCACCGACTCAACGCCCTCGACCTCCGGCAAA
TCCCGCGTCCCACCCTGCTCGAGCGCCAGCTCATGCGTCGGGGGGTCTGC
ACACCCGTCGTCCCCGCAGCAGATCTCACTCGGCCCGACTCGGTCTACCA
CCCCTCTCACCCGGCATGGAGGAGGCGGGTCTCCTTGCCTTGGGCGGACC
TTCCTCAGGGGCTTCAGGCGGTGGGAGGGGGCCGGGAGGAGGAGAGAGGC
CGGACGAGCCCTGCGCTGACCCACCCTCAGCCACGCCTTCCGCGGCCCCC
CGAGCCCGTCACCCTCTCCCTCGCCTTCTCTCTTCCCCGCTATTCGGACG
AGGCCGGTCGCCCCTCTCTTGCCTGGCTGCTCCGGCGCTTTCCCGACGAC
CTGATGCGGATCTACCAGGCCCTCCTTCTGGGGAAACGCCTCCTCTTCCT
GACCGTCTCGGAGCCAGCCGCCTCCGCCTGTCGCGCCGTCCTCTCCTCCC
TCCTCCTGCTCTCCCCCCCCTTCCTCGGACTTCTCCGCCGGGCCTTCCCC
TACGTCAGCCTGGCCGACCTGAGCTTCCTCCAGCTCCCTTCGCCTCCCAC
CACTCCCTCTGTCAGCGACAAGGGGGCTCTCGGCCTGGCGCGGGGGTATG
TGGCGGGCGCCACCAACCCCGTGTTCGCCAGGCGCGAGGAGTGGTGGGAC
CTCCTGTGCGACCTGGACCGCGGCCGCTGCTTCCTGCCGGGGGAGGCAGG
AGGAGGGGAGGGAGAGGGTGACGGAGGCACGTTGGGAGGGAGAGGGGCAG
GACGGGAGGGGGGCAAAGGCGGAGTGTGCGAGTATTTGGAGGGAGAGCTG
CTGTCAGGGGAGCTCGATGCCGCCTTTTCGGCGCACTTGCGAGCGACCAT
GGCGGCAGCTTATAGCGCGCCGTTGCGGATGCCTTCAGGGAGGAGAGAGG
TGGAGGGAGGAGGAGGAGCAAGAGAAGGGGCAGGGACGGAGGGAGGGGGG
CTAGAGGAGTACCTCCGGGTCGCTCTAAACGCGCACACCCAGGCACTCGT
GGCGCTGGCGGACGAGGGGGGGTCGCTAGCGCTCACCAAGCGGTCGCGAG
AAGTGGTGGGGCGGATGGCGATGGCTCAGAGCCACCGGGTGCAGAGGATG
CGGCAGTGGATGGCGGAGGCGGTCCGGGGAAAAGTCATGGTAAGGGGGCG
GGAAGGGAAAGGGAGTGAAGTCGGCCGCCGGAGGATTCGGCACACGCCCG
CCCCAGCCTCTCCCCTTCTCACGTGCTCAGCTTCCCCCCCTCGCCGCAAC
AGCTCGTGATGGACCCCTGGGCCGGGCTGGCCTCCCTCCGCCTCCCTCTT
GCCGCCATGCGGTCCCACTGCCACCTTTTGGAGCTGGCCGCGTCCCTCTC
CGAGGCCGAGGTCGAGGGCATCCTCAGCGACCTGAATCAAGCCCTGCAGG
ACCCCTCGGCCGCCCTCGCCTTCCTCGCCGCCACTCCCGAGCATAGCCAC
TACGATAAGCGGGTGTTGGGAGGGGCGGGAGCCTTCTCCGTGGTGGGCGC
TGCCTTATTCCACCCCTCTCAGAACTGCAGGTTTTATGCCTGTCTCATAT
TGCATAGATTGGAGCTGTGCCCAGCCTCAAGGCCGGCTGTGGAGTCTCTG
AACGGGATGGTGCGTCTGGCCTACCGGCGAGTTTGGCGGGAGATGACATC
TGGGTGAAAGAGGGGTGTGGGAAGAGGGCGGAGCGTGGAGGAGGGTGTGG
TAGAACCCTGTTTGCGTAGGCCTGCAGGCATTAGAAGCCAGCGGCAGTCG
GGGTGATCGATCCCGGGCCAGCCTCGTAGGGGTACGGGGGGGGCTTAATG
CTTGGAATGGGTTTTGGAAAACAATGGAGCGCACTCGTCCTAATGCAATC
CTCTCATATGTGCGAAGTACAGAAAGTAAAGTTAATTACAGGCTAACATC
GCGTTGTCGCCTTCAATTTTTATTTTAGATGTGTGACATGAAACGATGAT
GGGAAAATGGAGCTATTCCCCAACAAAATATGC
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protein sequence of rna7744

>rna7744-protein ID=rna7744-protein|Name=rna7744|organism=Nannochloropsis gaditana|type=polypeptide|length=520bp
MAVHRSRRRKGRIDEAQQEWSGREDAGEKGSEGMRHECSTSQMVSGTGKG
MLALVMLLTARQTEGFHFMSPSKTAGSSAAHAGRDGGVAGVGRVPALGSE
KFGRREGRPSTLSRGGRASRSGVVGTGGKWLRSSSESVVGPAVEHLVPAP
SQWALPDLSFSSSSASSRSLFPSMGQSSTPATFPFILYQRAAPRALSSAL
AGEITQPSLAETGLLAWAGGCSDGQGESGFFHLDSELGPLCGRKGGESWV
EEGEDEEEPSEECRRLSRTRRRAEEAVDPPSASVTLGDGGRKALMREEER
VEPGGTWAARGEVRQAFPSMTEQPPPSPQVQGDGPEPNRNDNFTINLGKA
LDHLRVDVPLLFEREPDLSIYTEDVRLRDHARIYASGKFMYQMVYFSLRV
ARIFMPMPPLVEVLNIRWCPARQSIEVRFQIRVDTLSDSLYFDAVSVYRV
NARGLIYEHLIEKVIRNDLSEKPSIVNLFYATRQVLVGGKVPIPDSVGMR
RDRAWSGIAGLTVKVEIERS
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mRNA from alignment at CM002473.1:230863..232663+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7744 ID=rna7744|Name=rna7744|organism=Nannochloropsis gaditana|type=mRNA|length=1801bp|location=Sequence derived from alignment at CM002473.1:230863..232663+ (Nannochloropsis gaditana)
ATGGCCGTTCACAGGTCACGACGTAGGAAAGGAAGAATAGATGAAGCCCA GCAGGAGTGGAGTGGCCGAGAGGAtgcgggggagaaaggcagtGAAGGCA TGAGACATGAGTGCTCCACGTCACAAATGGTGTCAGGAACAGGGAAGGGC ATGCTGGCCCTGGTGATGCTCTTGACGGCCAGACAAACGGAGGGATTTCA TTTCATGAGCCCATCGAAAACTGCGGGAAGCAGCGCGGCTCatgcaggga gggatggcggggTAGCAGGGGTGGGACGGGTACCAGCACTCGGCAGCGAG AAATTCGGTCGGCGCGAGGGACGCCCGTCGACTTTAtcgagggggggcag agcgAGCAGGTCCGGAGTGGTGGGCACAGGCGGCAAGTGGCTGCGGTCTT CCTCCGAGAGTGTCGTGGGGCCGGCGGTGGAGCACCTGGTCCCTGCACCC TCCCAGTGGGCGCTCCCcgacctctccttctcctcctcctccgcctcttc gcgctctcttttcccctccatggGCCAATCGTCCACTCCTGCCactttcc ccttcattctCTATCAGAGGGCAGCCCCCAGGGCCCtatcctccgccttg gcagGGGAGATCACTCAACCCTCGCTGGCAGAAACGGGGCTGTTGGCCTG GGCCGGTGGCTGCAGCGACGGTCAAGGGGAAAGCGGCTTCTTCCATTTGG ACTCGGAGCTGGGGCCTTTGtgtggaagaaaagggggggagtcatgggtc gaggagggggaggacgaggaagaaccGAGCGAGGAGTGCCGGCGGTTGTC ACGGACCAGGAgaagagcggaggaggccgtTGATCCTCCCTCGGCGTCAG TCACCCTGGGAGACGGTGGACGGAAGGCGCTcatgcgggaagaggaaagg gtggagcCGGGCGGGACGTGGGCCGCCCGCGGGGAGGTCCGTcaggcctt cccctccatgaccgagcagcctcccccctccccgcaggTGCAAGGGGACG GTCCGGAGCCCAACCGGAACGATAACTTCACGATCAATCTTGGCAAGGCC CTGGATCATCTGCGTGTGGATGTGCCTCTTCTGTTCGAGAGGGAGCCCGA CCTGAGCATCTACACGGAGGACGTGCGGCTGCGCGATCACGCCCGCATTT ACGCCTCGGGCAAGTTCATGTACCAGATGGTCTACTTCTCCCTGCGCGTG GCGAGGATCTTCATGCCCATGCCTCCGCTGGTGGAGGTCCTGAACATTCG CTGGTGTCCCGCCAGGCAGAGCATCGAGGTGCGATTCCAGATTCGCGTAG ACACGCTCTCAGACAGCCTCTACTTCGACGCCGTCTCCGTCTACCGGGTC AACGCGCGGGGCCTGATCTACGAGCACCTGATCGAGAAAGGTGCGTGCcg gggaaaagatgagggGGGGATCGTGGCGCTTGCCGAATACCTTGTCCTGA TTGCTTGCCTCGTGGCCAAGAGGACCTCCTCTAGCTCTTCCTCaccatct cctttcctggCGCCTTCCCACAGTGATACGGAACGACCTCTCGGAGAAAC CCTCGATCGTCAACCTCTTCTACGCGACACGACAGGTCCTGGTGGGCGGC AAAGTGCCCATCCCGGACAGCGTGGGCATGtaaggcggggaagagggctg GGAATGACGCGCGGGGGAGACAGGAATTGCGACGAGAAACATGGGGGCAG TGTATAGAGCCGTATCAATCGACACGGCGGACAGGAGGCGGGACAGAGCG TGGTCAGGGATAGCAGGGTTGACAGTGAAAGTGGAGATAGAGCGCAGCTA G
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Coding sequence (CDS) from alignment at CM002473.1:230863..232663+

>rna7744 ID=rna7744|Name=rna7744|organism=Nannochloropsis gaditana|type=CDS|length=4689bp|location=Sequence derived from alignment at CM002473.1:230863..232663+ (Nannochloropsis gaditana)
ATGGCCGTTCACAGGTCACGACGTAGGAAAGGAAGAATAGATGAAGCCCA
GCAGGAGTGGAGTGGCCGAGAGGAtgcgggggagaaaggcagtGAAGGCA
TGAGACATGAGTGCTCCACGTCACAAATGGTGTCAGGAACAGGGAAGGGC
ATGCTGGCCCTGGTGATGCTCTTGACGGCCAGACAAACGGAGGGATTTCA
TTTCATGAGCCCATCGAAAACTGCGGGAAGCAGCGCGGCTCatgcaggga
gggatggcggggTAGCAGGGGTGGGACGGGTACCAGCACTCGGCAGCGAG
AAATTCGGTCGGCGCGAGGGACGCCCGTCGACTTTAtcgagggggggcag
agcgAGCAGGTCCGGAGTGGTGGGCACAGGCGGCAAGTGGCTGCGGTCTT
CCTCCGAGAGTGTCGTGGGGCCGGCGGTGGAGCACCTGGTCCCTGCACCC
TCCCAGTGGGCGCTCCCcgacctctccttctcctcctcctccgcctcttc
gcgctctcttttcccctccatggGCCAATCGTCCACTCCTGCCactttcc
ccttcattctCTATCAGAGGGCAGCCCCCAGGGCCCtatcctccgccttg
gcagGGGAGATCACTCAACCCTCGCTGGCAGAAACGGGGCTGTTGGCCTG
GGCCGGTGGCTGCAGCGACGGTCAAGGGGAAAGCGGCTTCTTCCATTTGG
ACTCGGAGCTGGGGCCTTTGtgtggaagaaaagggggggagtcatgggtc
gaggagggggaggacgaggaagaaccGAGCGAGGAGTGCCGGCGGTTGTC
ACGGACCAGGAgaagagcggaggaggccgtTGATCCTCCCTCGGCGTCAG
TCACCCTGGGAGACGGTGGACGGAAGGCGCTcatgcgggaagaggaaagg
gtggagcCGGGCGGGACGTGGGCCGCCCGCGGGGAGGTCCGTcaggcctt
cccctccatgaccgagcagcctcccccctccccgcaggTGCAAGGGGACG
GTCCGGAGCCCAACCGGAACGATAACTTCACGATCAATCTTGGCAAGGCC
CTGGATCATCTGCGTGTGGATGTGCCTCTTCTGTTCGAGAGGGAGCCCGA
CCTGAGCATCTACACGGAGGACGTGCGGCTGCGCGATCACGCCCGCATTT
ACGCCTCGGGCAAGTTCATGTACCAGATGGTCTACTTCTCCCTGCGCGTG
GCGAGGATCTTCATGCCCATGCCTCCGCTGGTGGAGGTCCTGAACATTCG
CTGGTGTCCCGCCAGGCAGAGCATCGAGGTGCGATTCCAGATTCGCGTAG
ACACGCTCTCAGACAGCCTCTACTTCGACGCCGTCTCCGTCTACCGGGTC
AACGCGCGGGGCCTGATCTACGAGCACCTGATCGAGAAAGTGATACGGAA
CGACCTCTCGGAGAAACCCTCGATCGTCAACCTCTTCTACGCGACACGAC
AGGTCCTGGTGGGCGGCAAAGTGCCCATCCCGGACAGCGTGGGCATGAGG
CGGGACAGAGCGTGGTCAGGGATAGCAGGGTTGACAGTGAAAGTGGAGAT
AGAGCGCAGCTAGATGGCCGTTCACAGGTCACGACGTAGGAAAGGAAGAA
TAGATGAAGCCCAGCAGGAGTGGAGTGGCCGAGAGGAtgcgggggagaaa
ggcagtGAAGGCATGAGACATGAGTGCTCCACGTCACAAATGGTGTCAGG
AACAGGGAAGGGCATGCTGGCCCTGGTGATGCTCTTGACGGCCAGACAAA
CGGAGGGATTTCATTTCATGAGCCCATCGAAAACTGCGGGAAGCAGCGCG
GCTCatgcagggagggatggcggggTAGCAGGGGTGGGACGGGTACCAGC
ACTCGGCAGCGAGAAATTCGGTCGGCGCGAGGGACGCCCGTCGACTTTAt
cgagggggggcagagcgAGCAGGTCCGGAGTGGTGGGCACAGGCGGCAAG
TGGCTGCGGTCTTCCTCCGAGAGTGTCGTGGGGCCGGCGGTGGAGCACCT
GGTCCCTGCACCCTCCCAGTGGGCGCTCCCcgacctctccttctcctcct
cctccgcctcttcgcgctctcttttcccctccatggGCCAATCGTCCACT
CCTGCCactttccccttcattctCTATCAGAGGGCAGCCCCCAGGGCCCt
atcctccgccttggcagGGGAGATCACTCAACCCTCGCTGGCAGAAACGG
GGCTGTTGGCCTGGGCCGGTGGCTGCAGCGACGGTCAAGGGGAAAGCGGC
TTCTTCCATTTGGACTCGGAGCTGGGGCCTTTGtgtggaagaaaaggggg
ggagtcatgggtcgaggagggggaggacgaggaagaaccGAGCGAGGAGT
GCCGGCGGTTGTCACGGACCAGGAgaagagcggaggaggccgtTGATCCT
CCCTCGGCGTCAGTCACCCTGGGAGACGGTGGACGGAAGGCGCTcatgcg
ggaagaggaaagggtggagcCGGGCGGGACGTGGGCCGCCCGCGGGGAGG
TCCGTcaggccttcccctccatgaccgagcagcctcccccctccccgcag
gTGCAAGGGGACGGTCCGGAGCCCAACCGGAACGATAACTTCACGATCAA
TCTTGGCAAGGCCCTGGATCATCTGCGTGTGGATGTGCCTCTTCTGTTCG
AGAGGGAGCCCGACCTGAGCATCTACACGGAGGACGTGCGGCTGCGCGAT
CACGCCCGCATTTACGCCTCGGGCAAGTTCATGTACCAGATGGTCTACTT
CTCCCTGCGCGTGGCGAGGATCTTCATGCCCATGCCTCCGCTGGTGGAGG
TCCTGAACATTCGCTGGTGTCCCGCCAGGCAGAGCATCGAGGTGCGATTC
CAGATTCGCGTAGACACGCTCTCAGACAGCCTCTACTTCGACGCCGTCTC
CGTCTACCGGGTCAACGCGCGGGGCCTGATCTACGAGCACCTGATCGAGA
AAGTGATACGGAACGACCTCTCGGAGAAACCCTCGATCGTCAACCTCTTC
TACGCGACACGACAGGTCCTGGTGGGCGGCAAAGTGCCCATCCCGGACAG
CGTGGGCATGAGGCGGGACAGAGCGTGGTCAGGGATAGCAGGGTTGACAG
TGAAAGTGGAGATAGAGCGCAGCTAGATGGCCGTTCACAGGTCACGACGT
AGGAAAGGAAGAATAGATGAAGCCCAGCAGGAGTGGAGTGGCCGAGAGGA
tgcgggggagaaaggcagtGAAGGCATGAGACATGAGTGCTCCACGTCAC
AAATGGTGTCAGGAACAGGGAAGGGCATGCTGGCCCTGGTGATGCTCTTG
ACGGCCAGACAAACGGAGGGATTTCATTTCATGAGCCCATCGAAAACTGC
GGGAAGCAGCGCGGCTCatgcagggagggatggcggggTAGCAGGGGTGG
GACGGGTACCAGCACTCGGCAGCGAGAAATTCGGTCGGCGCGAGGGACGC
CCGTCGACTTTAtcgagggggggcagagcgAGCAGGTCCGGAGTGGTGGG
CACAGGCGGCAAGTGGCTGCGGTCTTCCTCCGAGAGTGTCGTGGGGCCGG
CGGTGGAGCACCTGGTCCCTGCACCCTCCCAGTGGGCGCTCCCcgacctc
tccttctcctcctcctccgcctcttcgcgctctcttttcccctccatggG
CCAATCGTCCACTCCTGCCactttccccttcattctCTATCAGAGGGCAG
CCCCCAGGGCCCtatcctccgccttggcagGGGAGATCACTCAACCCTCG
CTGGCAGAAACGGGGCTGTTGGCCTGGGCCGGTGGCTGCAGCGACGGTCA
AGGGGAAAGCGGCTTCTTCCATTTGGACTCGGAGCTGGGGCCTTTGtgtg
gaagaaaagggggggagtcatgggtcgaggagggggaggacgaggaagaa
ccGAGCGAGGAGTGCCGGCGGTTGTCACGGACCAGGAgaagagcggagga
ggccgtTGATCCTCCCTCGGCGTCAGTCACCCTGGGAGACGGTGGACGGA
AGGCGCTcatgcgggaagaggaaagggtggagcCGGGCGGGACGTGGGCC
GCCCGCGGGGAGGTCCGTcaggccttcccctccatgaccgagcagcctcc
cccctccccgcaggTGCAAGGGGACGGTCCGGAGCCCAACCGGAACGATA
ACTTCACGATCAATCTTGGCAAGGCCCTGGATCATCTGCGTGTGGATGTG
CCTCTTCTGTTCGAGAGGGAGCCCGACCTGAGCATCTACACGGAGGACGT
GCGGCTGCGCGATCACGCCCGCATTTACGCCTCGGGCAAGTTCATGTACC
AGATGGTCTACTTCTCCCTGCGCGTGGCGAGGATCTTCATGCCCATGCCT
CCGCTGGTGGAGGTCCTGAACATTCGCTGGTGTCCCGCCAGGCAGAGCAT
CGAGGTGCGATTCCAGATTCGCGTAGACACGCTCTCAGACAGCCTCTACT
TCGACGCCGTCTCCGTCTACCGGGTCAACGCGCGGGGCCTGATCTACGAG
CACCTGATCGAGAAAGTGATACGGAACGACCTCTCGGAGAAACCCTCGAT
CGTCAACCTCTTCTACGCGACACGACAGGTCCTGGTGGGCGGCAAAGTGC
CCATCCCGGACAGCGTGGGCATGAGGCGGGACAGAGCGTGGTCAGGGATA
GCAGGGTTGACAGTGAAAGTGGAGATAGAGCGCAGCTAG
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Synonyms
Publications