rna7727, rna7727 (mRNA) Nannochloropsis gaditana

Overview
Namerna7727
Unique Namerna7727
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1957
Alignment locationCM002473.1:180618..182010 -

Link to JBrowse

Properties
Property NameValue
Productglutaredoxin-like protein
Orig transcript idgnl|cribi|Naga_100102g5.68.mrna
Orig protein idgnl|cribi|Naga_100102g5.68
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:180618..182010 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100102g5gene7481Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7727rna7727-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22957.1cds7706Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7727 ID=rna7727|Name=rna7727|organism=Nannochloropsis gaditana|type=mRNA|length=1957bp
GGGGACATGGGAAAAATTAAATACAGCGACCTGAACAATGAAGAAAATAT
ATGTTTCAAAGCGGCTCAAATCGCTGGATAATTTCATGTCCGAGGCGTGT
AGAATATGACACAGGTTCTCCGTGTCCGACGGCGTGCCACCGGGGAGGGG
AGACGAGGGCGACAGCTCAAGTGCCCAGAGACAAGGCCTCGTCCGCTCCC
TCCACAAGACGTAACAACCGCAAAAAAGAATTACTGACGATGACGACAAC
TAATTTTTCTGCAGAAGCCTATTCTGTCGGGGCAATTACTGCTCGGCGCA
CGCAGCTGATATTTTTTTCGTCTCCTTTATCAGCTCCCATGTCTTCAAGA
GGCCTCCGGGGCCCTCTACTCCTCTCCCATGCTTTTTTACTCCTGGACCT
TATCAAAGTCTGATGCAGTCGAAGCCACAGCGAGACAAATTTTTATAAAA
CAGAGAAAGCAGAGGAGCTGGCTTCCTTTTTGGGCATGGAGGGCCTGCTC
ACCTTGCTGCAGGACGGCGACATGTGTCTCACTGAAGCCCGGTCGTCTCT
CTTGCGGTCTCGCGAGCTACTGGACGTGTTCCGGCACGAAGCCGGGCGCC
TCCTCCAACGTCTCTCCCTCCTGCGCGCCCAAGTCCGAGCCCTTGCCCGC
CTTCTCCACTGGGTATGGGCCGCTAACAACAGCCTCGGGCCACTCGAGCG
CCTTCCCCCGGACGACGCGCCCTTCCAGACCCTCGAAGCCGTCTGCGACC
AGCTCCGGCAGACCCGTGTGGACCCGGAGCTGGTGGCAGGGGAGAGGGGT
CACACGCTCTTCGACTTCCTGGACGAGGGCGCCGTCACCTCCCTGCGAGC
TCAGGCGGAGGCCGACGCGAGGGAGGTGTGCGTCCTGCGGGAGAGGGGAC
TCCGCGCTCAGGCGAGTTTGGAGGAGCGGCTGCTCTGTCTGGAGCAAGCC
ATTCGGGCCGCACTCGAGGGGGCGGGGATGCTGCCGGGGAGGGACGGGGA
GGAAGAGGAGGAGGAGGAGGGAGGGGAAGAGGTGGAGGAGGAGGGAGAGG
AAGAGCGGGTGGAGGCGACGTGGTTGTGGAGAGTGTTGGCGCAGAACGTG
AGAGACCAGGCCAGGGCGGTGGCGGAGATGAAGGCAGCCCTCGTGCGGGC
GGCCAGCGCCTATGCCCGGTGGCGCGGGGAAGGAGGAGGCAAGGGGGCCG
ACGCCGCTTCCGAGGGCGGGGCAAAGGATGGGAAGGCGCTTGGGCCCTGC
TCGCCCGCCAAGGAGGAGCAAGAGCTCCTGCGAGTGCTGCAGTCGGGGAT
GCCTCGAATGAGGGCCTGGCGCAGGCAGATGGAGGAGGAGGTGCCCGCCC
TCCTTCACGCCCTCCGTCGCGCCCTCCGTGAGCTCGTCGCGGGGGAGATG
GCTGAGGCCGCGCGCGAGTCCCACGGGCTGGTGGAGGGGCTGGAGGAGGA
CCAGGCCCGCTTAACCTCCCTGAGGGCGGAGGCGCAGAGCTCGGCGCGCG
AGGTCGAGTCGCTGGCGGCCTTCTACTCGCGCTTTGCCCTCGCCTACGCC
CAGTTGCGGCCCGAGCTGGAGCGTCGGCGGCGGGTGCTCCGGGAGACTGC
CGAGGTCGTGAAGGAGGTGGAGGCTGGTCTCCGGTCGCGGGAGGAGGAGG
AGGCGGCGGCCCGGGAGAGGTTCTGGGAGGCACACGGGCGCTACCTGCCT
CAGTCCCTCTGCCCCGTCGTCCGCGAGCCCGCCGAGAGCTTCAGGGTGGT
GCCCAGCGTGGAGGAGGCGCGGAGGCGGCTGTCGGTGCTGGAGGCAAGGG
AGGAAGAGGGGGGGGGAAGGGGAGCTGAGGAGGGGTACGGGGAGGGAATG
TGGGATGCGAGGGCAGGCAGAAAGGGAGGCAAGGCAGTGTAAAGAAGGAA
GATGGGGAGAAGCAGAAGCATCACTGTGAAGAGGAAGACACAAGCACGCA
GCCACGC
back to top

protein sequence of rna7727

>rna7727-protein ID=rna7727-protein|Name=rna7727|organism=Nannochloropsis gaditana|type=polypeptide|length=158bp
MLRLSPASNLAAAARRSFASSPPPGNEDSHDDFKPQRSSPPADLDGAIKM
IAEQVKKHQIMLYMKGTPARPQCGFSAQAVRILHASGVDFDSVNVLDYPM
IREGVKKYSEWPTVPQLFVGGEFVGGCDIMTSLFQSGELAQILEESAKKQ
QKEGESAP
back to top

mRNA from alignment at CM002473.1:180618..182010-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7727 ID=rna7727|Name=rna7727|organism=Nannochloropsis gaditana|type=mRNA|length=1393bp|location=Sequence derived from alignment at CM002473.1:180618..182010- (Nannochloropsis gaditana)
ACCGAGGTGTGAGAGTGGTGTCAAGATGTCAGTGTTTCTGATGCCAGGCC
GCAAGGTGGTGCACGCGCGAGTATCTTCCTGTCCGGGAGCTCGCCTCCGT
CATACAGGTCTCGCGCCCATTGCACATCACTAATTCACCATCACTCACCG
GCCCTTTCTCCTATCATCTACAAGTTCACAGTGATCCGACTCACAGGGAG
ACAATGCAAGCCCTAAGCGCCTCTTCCCGCGGATTTATGCGTGCCACGAG
GCGGTTCGTGGCCAAGGTAAGGACAGGGACGGAGCAAGAGCCGCACTACG
CACTTGTATTCACAGTCCCCAACCCCTTCATTTTCCCAGGCCCCTGCATC
CGCGCCATGCGCCACGTCTCGACAACTATCTGCATCTTGCATGCTACGTC
TCAGTCCTGCCTCAAATTTGGCCGCAGCAGCTCGTCGTAGCTTTGCCTCG
TCGCCTCCCCCTGGGAACGAGGACTCGCATGACGATTTTAAACCCCAGCG
GTCATCCCCCCCGGCAGACTTGGACGGCGCTATCAAGATGATCGCGGAGC
AAGTGAAGAAACACCAAATTATGCTGTACATGAAAGGCACGCCGGCTCGG
CCCCAGTGTGGGTTCTCTGCGCAGGCCGTCCGCATTTTGCACGCTTCTGG
AGTTGACTTCGACTCGGTGAACGTACTGGACTATCCCATGATCCGCGAGG
GCGTCAAAAAGTATTCGTAAGTCACTTTAGAGCTTGTGTCTTCCAAAATT
TAATGTGTGAGGCCTGATCCTTGGCTTGCTCGCTTTCTTCCCGGGTGGAT
GCTCCCTTCCCTGTCTGACCCTGTGGGTCCGGTGGGCGTTTCTCCTCCGA
CACCCGGGCCGTGAAAGGCCGTGAACGCCTCACTCACATCCCTTTACGTC
CTTGGGTCGGACTTGCTCGTTTCTTTTCCTTCTCTCAGGGAGTGGCCGAC
AGTGCCGCAGCTCTTCGTGGGAGGGGAGTTCGTCGGGGGGTGTGACATCA
TGACCTCCCTCTTTCAGTCCGGAGAGCTGGCCCAGATTCTCGAGGAGTCG
GCCAAGAAACAGCAGAAAGAGGGGGAGTCTGCGCCATGAGGCGGAAAGGC
CAGGGAGGAGGGCGGGAAAGGAGAAGGGATGGCGGGGGCCGTGGAGTGAC
TGGGCTTTCGGTAGCCGGGGTGTACACAACGACGGGGGGTGCACGCGCCA
TGTGGGTGAGAGGGGCGACGTTGTGGAAGGCATGGGGGCGAGGGAAGAAA
AGCAAAGAAGCAAAAAGAAGGGCGTGTGGGCGTGAGCCGGCTCTCTGCGC
GCGGGCTCTGTCCGAGAGGGCCCCTTCGGCGTGGCTGCGTGCTTGTGTCT
TCCTCTTCACAGTGATGCTTCTGCTTCTCCCCATCTTCCTTCT
back to top

Coding sequence (CDS) from alignment at CM002473.1:180618..182010-

>rna7727 ID=rna7727|Name=rna7727|organism=Nannochloropsis gaditana|type=CDS|length=954bp|location=Sequence derived from alignment at CM002473.1:180618..182010- (Nannochloropsis gaditana)
GGAGTGGCCGACAGTGCCGCAGCTCTTCGTGGGAGGGGAGTTCGTCGGGG
GGTGTGACATCATGACCTCCCTCTTTCAGTCCGGAGAGCTGGCCCAGATT
CTCGAGGAGTCGGCCAAGAAACAGCAGAAAGAGGGGGAGTCTGCGCCATG
AATGCTACGTCTCAGTCCTGCCTCAAATTTGGCCGCAGCAGCTCGTCGTA
GCTTTGCCTCGTCGCCTCCCCCTGGGAACGAGGACTCGCATGACGATTTT
AAACCCCAGCGGTCATCCCCCCCGGCAGACTTGGACGGCGCTATCAAGAT
GATCGCGGAGCAAGTGAAGAAACACCAAATTATGCTGTACATGAAAGGCA
CGCCGGCTCGGCCCCAGTGTGGGTTCTCTGCGCAGGCCGTCCGCATTTTG
CACGCTTCTGGAGTTGACTTCGACTCGGTGAACGTACTGGACTATCCCAT
GATCCGCGAGGGCGTCAAAAAGTATTCGGAGTGGCCGACAGTGCCGCAGC
TCTTCGTGGGAGGGGAGTTCGTCGGGGGGTGTGACATCATGACCTCCCTC
TTTCAGTCCGGAGAGCTGGCCCAGATTCTCGAGGAGTCGGCCAAGAAACA
GCAGAAAGAGGGGGAGTCTGCGCCATGAATGCTACGTCTCAGTCCTGCCT
CAAATTTGGCCGCAGCAGCTCGTCGTAGCTTTGCCTCGTCGCCTCCCCCT
GGGAACGAGGACTCGCATGACGATTTTAAACCCCAGCGGTCATCCCCCCC
GGCAGACTTGGACGGCGCTATCAAGATGATCGCGGAGCAAGTGAAGAAAC
ACCAAATTATGCTGTACATGAAAGGCACGCCGGCTCGGCCCCAGTGTGGG
TTCTCTGCGCAGGCCGTCCGCATTTTGCACGCTTCTGGAGTTGACTTCGA
CTCGGTGAACGTACTGGACTATCCCATGATCCGCGAGGGCGTCAAAAAGT
ATTC
back to top
Synonyms
Publications