EWM22957.1, cds7706 (CDS) Nannochloropsis gaditana

Overview
NameEWM22957.1
Unique Namecds7706
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002473.1:181295..181620 -
Alignment locationCM002473.1:180922..181072 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22957.1
Productglutaredoxin-like protein
Orig transcript idgnl|cribi|Naga_100102g5.68.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:181295..181620 -
CM002473.1supercontigCM002473.1:180922..181072 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
GO:0015035protein disulfide oxidoreductase activity
GO:0009055electron transfer activity
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
GO:0019725cellular homeostasis
GO:0045454cell redox homeostasis
Vocabulary: Cellular Component
TermDefinition
GO:0005623cell
Vocabulary: INTERPRO
TermDefinition
IPR004480Monothiol_GRX-rel
IPR002109Glutaredoxin
IPR012336Thioredoxin-like_fold
Homology
BLAST of EWM22957.1 vs. NCBI_GenBank
Match: gi|553181745|ref|XP_005853615.1| (glutaredoxin-like protein [Nannochloropsis gaditana CCMP526] >gi|422295442|gb|EKU22741.1| glutaredoxin-like protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 329.717 bits (844), Expect = 8.109e-114
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0
Query:    1 MLRLSPASNLAAAARRSFASSPPPGNEDSHDDFKPQRSSPPADLDGAIKMIAEQVKKHQIMLYMKGTPARPQCGFSAQAVRILHASGVDFDSVNVLDYPMIREGVKKYSEWPTVPQLFVGGEFVGGCDIMTSLFQSGELAQILEESAKKQQKEGESAP 158
            MLRLSPASNLAAAARRSFASSPPPGNEDSHDDFKPQRSSPPADLDGAIKMIAEQVKKHQIMLYMKGTPARPQCGFSAQAVRILHASGVDFDSVNVLDYPMIREGVKKYSEWPTVPQLFVGGEFVGGCDIMTSLFQSGELAQILEESAKKQQKEGESAP
Sbjct:   39 MLRLSPASNLAAAARRSFASSPPPGNEDSHDDFKPQRSSPPADLDGAIKMIAEQVKKHQIMLYMKGTPARPQCGFSAQAVRILHASGVDFDSVNVLDYPMIREGVKKYSEWPTVPQLFVGGEFVGGCDIMTSLFQSGELAQILEESAKKQQKEGESAP 196          
BLAST of EWM22957.1 vs. NCBI_GenBank
Match: gi|585103690|gb|EWM22957.1| (glutaredoxin-like protein [Nannochloropsis gaditana])

HSP 1 Score: 327.02 bits (837), Expect = 2.083e-113
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0
Query:    1 MLRLSPASNLAAAARRSFASSPPPGNEDSHDDFKPQRSSPPADLDGAIKMIAEQVKKHQIMLYMKGTPARPQCGFSAQAVRILHASGVDFDSVNVLDYPMIREGVKKYSEWPTVPQLFVGGEFVGGCDIMTSLFQSGELAQILEESAKKQQKEGESAP 158
            MLRLSPASNLAAAARRSFASSPPPGNEDSHDDFKPQRSSPPADLDGAIKMIAEQVKKHQIMLYMKGTPARPQCGFSAQAVRILHASGVDFDSVNVLDYPMIREGVKKYSEWPTVPQLFVGGEFVGGCDIMTSLFQSGELAQILEESAKKQQKEGESAP
Sbjct:    1 MLRLSPASNLAAAARRSFASSPPPGNEDSHDDFKPQRSSPPADLDGAIKMIAEQVKKHQIMLYMKGTPARPQCGFSAQAVRILHASGVDFDSVNVLDYPMIREGVKKYSEWPTVPQLFVGGEFVGGCDIMTSLFQSGELAQILEESAKKQQKEGESAP 158          
BLAST of EWM22957.1 vs. NCBI_GenBank
Match: gi|1214687285|gb|OWZ03629.1| (Grx4 family monothiol glutaredoxin [Phytophthora megakarya])

HSP 1 Score: 175.637 bits (444), Expect = 1.897e-53
Identity = 86/149 (57.72%), Postives = 109/149 (73.15%), Query Frame = 0
Query:    2 LRLSPASNLAAAARRSFASSPPPGNEDSHDDFKPQ-RSSPPADLDGAIKMIAEQVKKHQIMLYMKGTPARPQCGFSAQAVRILHASGVDFDSVNVLDYPMIREGVKKYSEWPTVPQLFVGGEFVGGCDIMTSLFQSGELAQILEESAKK 149
            LR++PA    AA  R F++      +DSH DF+PQ  ++   + D  +KMI   VK + +MLYMKGTP+ PQCGFS Q VRILHA GV FDSVNVLD+P IREGVK+YS+WPT+PQL+V GEFVGGCDI+T + +SGELA++L E  K 
Sbjct:   23 LRVAPA--FVAAQPRFFSAK---SGDDSHSDFQPQYHAAKSTEKDEILKMIESHVKTYPVMLYMKGTPSAPQCGFSMQVVRILHAQGVSFDSVNVLDHPEIREGVKEYSQWPTIPQLYVNGEFVGGCDIITDMSKSGELAELLAEFKKN 166          
BLAST of EWM22957.1 vs. NCBI_GenBank
Match: gi|970661170|gb|KUF98661.1| (cGMP-gated cation channel alpha-1 [Phytophthora nicotianae])

HSP 1 Score: 172.94 bits (437), Expect = 1.230e-52
Identity = 83/150 (55.33%), Postives = 108/150 (72.00%), Query Frame = 0
Query:    1 MLRLSPASNLAAAARRSFASSPPPGNEDSHDDFKPQ-RSSPPADLDGAIKMIAEQVKKHQIMLYMKGTPARPQCGFSAQAVRILHASGVDFDSVNVLDYPMIREGVKKYSEWPTVPQLFVGGEFVGGCDIMTSLFQSGELAQILEESAKK 149
            M R++    ++A   R F++      +DSH DF+PQ  ++   + D  +KMI   VK + +MLYMKGTP+ PQCGFS Q VRILHA GV FDSVNVLD+P IREGVK+YS+WPT+PQL+V GEFVGGCDI+T + +SGELA++L E  K 
Sbjct:    1 MQRVAAPVFVSAHQSRFFSAK---SGDDSHSDFQPQYHAAKSTEKDEILKMIESHVKTYPVMLYMKGTPSAPQCGFSMQVVRILHAQGVSFDSVNVLDHPEIREGVKEYSQWPTIPQLYVNGEFVGGCDIITDMNKSGELAELLAEFKKN 147          
BLAST of EWM22957.1 vs. NCBI_GenBank
Match: gi|301121310|ref|XP_002908382.1| (monothiol glutaredoxin-5, mitochondrial precursor [Phytophthora infestans T30-4] >gi|262103413|gb|EEY61465.1| monothiol glutaredoxin-5, mitochondrial precursor [Phytophthora infestans T30-4])

HSP 1 Score: 173.711 bits (439), Expect = 1.249e-52
Identity = 78/120 (65.00%), Postives = 97/120 (80.83%), Query Frame = 0
Query:   27 EDSHDDFKPQ-RSSPPADLDGAIKMIAEQVKKHQIMLYMKGTPARPQCGFSAQAVRILHASGVDFDSVNVLDYPMIREGVKKYSEWPTVPQLFVGGEFVGGCDIMTSLFQSGELAQILEE 145
            +DSH DF+PQ  ++   + D  IKMI   VK + +MLYMKGTP+ PQCGFS Q VRILHA GV FDSVNVLD+P IREGVK+YS+WPT+PQL+V GEFVGGCDI+T + +SGEL+++LEE
Sbjct:   48 DDSHSDFQPQYHAAKSTEKDEIIKMIESHVKTYPVMLYMKGTPSAPQCGFSMQVVRILHAQGVSFDSVNVLDHPEIREGVKEYSQWPTIPQLYVNGEFVGGCDIITDMNKSGELSELLEE 167          
BLAST of EWM22957.1 vs. NCBI_GenBank
Match: gi|970634694|gb|KUF79824.1| (Monothiol glutaredoxin-5 [Phytophthora nicotianae] >gi|970644549|gb|KUF85347.1| Monothiol glutaredoxin-5 [Phytophthora nicotianae])

HSP 1 Score: 172.94 bits (437), Expect = 2.576e-52
Identity = 83/150 (55.33%), Postives = 108/150 (72.00%), Query Frame = 0
Query:    1 MLRLSPASNLAAAARRSFASSPPPGNEDSHDDFKPQ-RSSPPADLDGAIKMIAEQVKKHQIMLYMKGTPARPQCGFSAQAVRILHASGVDFDSVNVLDYPMIREGVKKYSEWPTVPQLFVGGEFVGGCDIMTSLFQSGELAQILEESAKK 149
            M R++    ++A   R F++      +DSH DF+PQ  ++   + D  +KMI   VK + +MLYMKGTP+ PQCGFS Q VRILHA GV FDSVNVLD+P IREGVK+YS+WPT+PQL+V GEFVGGCDI+T + +SGELA++L E  K 
Sbjct:   23 MQRVAAPVFVSAHQSRFFSAK---SGDDSHSDFQPQYHAAKSTEKDEILKMIESHVKTYPVMLYMKGTPSAPQCGFSMQVVRILHAQGVSFDSVNVLDHPEIREGVKEYSQWPTIPQLYVNGEFVGGCDIITDMNKSGELAELLAEFKKN 169          
BLAST of EWM22957.1 vs. NCBI_GenBank
Match: gi|675163739|ref|XP_008890754.1| (Grx4 family monothiol glutaredoxin [Phytophthora parasitica INRA-310] >gi|566033434|gb|ETI56345.1| Grx4 family monothiol glutaredoxin [Phytophthora parasitica P1569] >gi|567971105|gb|ETK96118.1| Grx4 family monothiol glutaredoxin [Phytophthora parasitica] >gi|567999456|gb|ETL49494.1| Grx4 family monothiol glutaredoxin [Phytophthora parasitica] >gi|568028630|gb|ETM02568.1| Grx4 family monothiol glutaredoxin [Phytophthora parasitica] >gi|568059221|gb|ETM55798.1| Grx4 family monothiol glutaredoxin [Phytophthora parasitica] >gi|568110104|gb|ETN24711.1| Grx4 family monothiol glutaredoxin [Phytophthora parasitica INRA-310] >gi|570337126|gb|ETO85074.1| Grx4 family monothiol glutaredoxin [Phytophthora parasitica P1976] >gi|570961147|gb|ETP26126.1| Grx4 family monothiol glutaredoxin [Phytophthora parasitica CJ01A1] >gi|570997820|gb|ETP54123.1| Grx4 family monothiol glutaredoxin [Phytophthora parasitica P10297])

HSP 1 Score: 172.94 bits (437), Expect = 2.834e-52
Identity = 83/150 (55.33%), Postives = 108/150 (72.00%), Query Frame = 0
Query:    1 MLRLSPASNLAAAARRSFASSPPPGNEDSHDDFKPQ-RSSPPADLDGAIKMIAEQVKKHQIMLYMKGTPARPQCGFSAQAVRILHASGVDFDSVNVLDYPMIREGVKKYSEWPTVPQLFVGGEFVGGCDIMTSLFQSGELAQILEESAKK 149
            M R++    ++A   R F++      +DSH DF+PQ  ++   + D  +KMI   VK + +MLYMKGTP+ PQCGFS Q VRILHA GV FDSVNVLD+P IREGVK+YS+WPT+PQL+V GEFVGGCDI+T + +SGELA++L E  K 
Sbjct:   25 MQRVAAPVFVSAHQSRFFSAK---SGDDSHSDFQPQYHAAKSTEKDEILKMIESHVKTYPVMLYMKGTPSAPQCGFSMQVVRILHAQGVSFDSVNVLDHPEIREGVKEYSQWPTIPQLYVNGEFVGGCDIITDMNKSGELAELLAEFKKN 171          
BLAST of EWM22957.1 vs. NCBI_GenBank
Match: gi|695405104|ref|XP_009523710.1| (hypothetical protein PHYSODRAFT_285540 [Phytophthora sojae] >gi|348681177|gb|EGZ20993.1| hypothetical protein PHYSODRAFT_285540 [Phytophthora sojae])

HSP 1 Score: 172.17 bits (435), Expect = 6.014e-52
Identity = 83/142 (58.45%), Postives = 104/142 (73.24%), Query Frame = 0
Query:    8 SNLAAAARRSFASSPPPGNEDSHDDFKPQ-RSSPPADLDGAIKMIAEQVKKHQIMLYMKGTPARPQCGFSAQAVRILHASGVDFDSVNVLDYPMIREGVKKYSEWPTVPQLFVGGEFVGGCDIMTSLFQSGELAQILEESAK 148
            S L   A++    S   G++ SH DF+PQ  ++   + D  +KMI   VK + IMLYMKGTP+ PQCGFS Q VRILHA GV FDSVNVLD+P IREGVK+YS+WPT+PQL+V GEFVGGCDI+T + +SGELA++L E  K
Sbjct:   30 SQLQLLAQQPRFFSAKSGDDGSHSDFQPQYHAAKSTEKDEILKMIESHVKTYPIMLYMKGTPSAPQCGFSMQVVRILHAQGVSFDSVNVLDHPEIREGVKEYSQWPTIPQLYVKGEFVGGCDIITDMSKSGELAELLAEFKK 171          
BLAST of EWM22957.1 vs. NCBI_GenBank
Match: gi|953499051|emb|CEG39363.1| (grx4 family monothiol glutaredoxin [Plasmopara halstedii])

HSP 1 Score: 171.785 bits (434), Expect = 8.841e-52
Identity = 78/125 (62.40%), Postives = 98/125 (78.40%), Query Frame = 0
Query:   27 EDSHDDFKPQ-RSSPPADLDGAIKMIAEQVKKHQIMLYMKGTPARPQCGFSAQAVRILHASGVDFDSVNVLDYPMIREGVKKYSEWPTVPQLFVGGEFVGGCDIMTSLFQSGELAQILEESAKKQ 150
            +DSH DFKPQ  ++  ++ D  +KMI + VK + IMLYMKGTP+ PQCGFS Q VR LHA GV FDSVNVLD+P IREGVKKYS+WPT+PQL+V GEFVGGCDI+  + +SGEL+++L    KK+
Sbjct:   45 DDSHSDFKPQYHAAKSSETDEILKMIDDHVKTYPIMLYMKGTPSAPQCGFSMQVVRALHAQGVSFDSVNVLDHPEIREGVKKYSQWPTIPQLYVNGEFVGGCDIIMDMSKSGELSELLANFKKKE 169          
BLAST of EWM22957.1 vs. NCBI_GenBank
Match: gi|673054743|ref|XP_008881332.1| (Grx4 family monothiol glutaredoxin [Aphanomyces invadans] >gi|574462864|gb|ETV90038.1| Grx4 family monothiol glutaredoxin [Aphanomyces invadans])

HSP 1 Score: 170.244 bits (430), Expect = 1.717e-51
Identity = 77/134 (57.46%), Postives = 102/134 (76.12%), Query Frame = 0
Query:   16 RSFASSPPPGNEDSHDDFKPQ-RSSPPADLDGAIKMIAEQVKKHQIMLYMKGTPARPQCGFSAQAVRILHASGVDFDSVNVLDYPMIREGVKKYSEWPTVPQLFVGGEFVGGCDIMTSLFQSGELAQILEESAK 148
            R+ A+S    +  SHDDFKP+  ++P +D D  +K+I   VK + +MLYMKG+P  PQCGFS Q V+ILHA GV FDSVNVLD+  IREGVK+YS+WPT+PQLFV GEF+GGCDI+T + +SGEL ++L+ + K
Sbjct:   13 RTVAASARCLSTASHDDFKPKYHAAPSSDKDDVLKLIESHVKTYPVMLYMKGSPTSPQCGFSRQVVQILHAQGVSFDSVNVLDHEEIREGVKEYSQWPTIPQLFVKGEFIGGCDIVTDMHKSGELEELLKTAVK 146          
The following BLAST results are available for this feature:
BLAST of EWM22957.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553181745|ref|XP_005853615.1|8.109e-114100.00glutaredoxin-like protein [Nannochloropsis gaditan... [more]
gi|585103690|gb|EWM22957.1|2.083e-113100.00glutaredoxin-like protein [Nannochloropsis gaditan... [more]
gi|1214687285|gb|OWZ03629.1|1.897e-5357.72Grx4 family monothiol glutaredoxin [Phytophthora m... [more]
gi|970661170|gb|KUF98661.1|1.230e-5255.33cGMP-gated cation channel alpha-1 [Phytophthora ni... [more]
gi|301121310|ref|XP_002908382.1|1.249e-5265.00monothiol glutaredoxin-5, mitochondrial precursor ... [more]
gi|970634694|gb|KUF79824.1|2.576e-5255.33Monothiol glutaredoxin-5 [Phytophthora nicotianae]... [more]
gi|675163739|ref|XP_008890754.1|2.834e-5255.33Grx4 family monothiol glutaredoxin [Phytophthora p... [more]
gi|695405104|ref|XP_009523710.1|6.014e-5258.45hypothetical protein PHYSODRAFT_285540 [Phytophtho... [more]
gi|953499051|emb|CEG39363.1|8.841e-5262.40grx4 family monothiol glutaredoxin [Plasmopara hal... [more]
gi|673054743|ref|XP_008881332.1|1.717e-5157.46Grx4 family monothiol glutaredoxin [Aphanomyces in... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7727rna7727Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications