rna7722, rna7722 (mRNA) Nannochloropsis gaditana

Overview
Namerna7722
Unique Namerna7722
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length303
Alignment locationCM002473.1:168848..169280 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101702g1.5186.mrna
Orig protein idgnl|cribi|Naga_101702g1.5186
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:168848..169280 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101702g1gene7476Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7722rna7722-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22972.1cds7701Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7722 ID=rna7722|Name=rna7722|organism=Nannochloropsis gaditana|type=mRNA|length=303bp
ATGGTGGGCCCCACCGCCTTCGAGGTGGCGAGGCGCTATACGGACGACGT
GGTCTACGTGGACGAGAAGATGATCGCGCTGGCCATGCTCCGGCTTCTGG
AGAACGAGCGCAGCGTGGGGGGCCGCTGGACCTGCCCGAGTACCGGGACA
AGAACGTGGTGGTGCTCCTGTGTGGGGGGAACATTGACATCACCATGCTG
GGCCGGGTCATCGACAGGGGCCTCGCCGCGGACGGTCGCCTCATCCGCTT
CATCGCCACCGTCTCCGACAGACCGGGCGGCATCTCCAGGCTCACCAAGG
TGA
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protein sequence of rna7722

>rna7722-protein ID=rna7722-protein|Name=rna7722|organism=Nannochloropsis gaditana|type=polypeptide|length=101bp
MGREHSEQLRQALLAAGYELAWDLTGVGKTVTEGCTLRRGGRVSWREGGG
GGVVDRQLVCVRICVLNHERSLQEGHGNRTRWYSGACQRKLARMRPSFLS
P
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mRNA from alignment at CM002473.1:168848..169280+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7722 ID=rna7722|Name=rna7722|organism=Nannochloropsis gaditana|type=mRNA|length=433bp|location=Sequence derived from alignment at CM002473.1:168848..169280+ (Nannochloropsis gaditana)
ATGGGCCGGGAGCACTCTGAGCAGCTTCGACAAGCGCTCCTGGCGGCGGG
CTATGAGCTGGCCTGGGACTTGACGGGCGTGGGCAAAACTGTCACGGagg
tcgagaaggagaactaggggggcggggaggagaatcCTGAGACGTGCACA
TGGTAGAGGGGTGTACTCTACGACGTGGCGGGCGTGTGTcgtggcgggaa
ggggggggcggtggaggtaTGGGGACGGGCATCAGccgggacgcggaggg
aggttccGAGGAGACATGGTGTATATAGGTTGAGTGGTCGACCGTCAACT
TGTGTGCGTGCGTATCTGTGTCTTAAACCATGAACGTAGCCTTCAAGAAG
GCCATGGCAATAGGACTCGATGGTATTCAGGCGCCTGCCAACGCAAATTA
GCACGAATGCGTCCGTCGTTTCTGAGTCCTTGA
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Coding sequence (CDS) from alignment at CM002473.1:168848..169280+

>rna7722 ID=rna7722|Name=rna7722|organism=Nannochloropsis gaditana|type=CDS|length=918bp|location=Sequence derived from alignment at CM002473.1:168848..169280+ (Nannochloropsis gaditana)
ATGGGCCGGGAGCACTCTGAGCAGCTTCGACAAGCGCTCCTGGCGGCGGG
CTATGAGCTGGCCTGGGACTTGACGGGCGTGGGCAAAACTGTCACGGagG
GGTGTACTCTACGACGTGGCGGGCGTGTGTcgtggcgggaaggggggggc
ggtggagTGGTCGACCGTCAACTTGTGTGCGTGCGTATCTGTGTCTTAAA
CCATGAACGTAGCCTTCAAGAAGGCCATGGCAATAGGACTCGATGGTATT
CAGGCGCCTGCCAACGCAAATTAGCACGAATGCGTCCGTCGTTTCTGAGT
CCTTGAATGGGCCGGGAGCACTCTGAGCAGCTTCGACAAGCGCTCCTGGC
GGCGGGCTATGAGCTGGCCTGGGACTTGACGGGCGTGGGCAAAACTGTCA
CGGagGGGTGTACTCTACGACGTGGCGGGCGTGTGTcgtggcgggaaggg
gggggcggtggagTGGTCGACCGTCAACTTGTGTGCGTGCGTATCTGTGT
CTTAAACCATGAACGTAGCCTTCAAGAAGGCCATGGCAATAGGACTCGAT
GGTATTCAGGCGCCTGCCAACGCAAATTAGCACGAATGCGTCCGTCGTTT
CTGAGTCCTTGAATGGGCCGGGAGCACTCTGAGCAGCTTCGACAAGCGCT
CCTGGCGGCGGGCTATGAGCTGGCCTGGGACTTGACGGGCGTGGGCAAAA
CTGTCACGGagGGGTGTACTCTACGACGTGGCGGGCGTGTGTcgtggcgg
gaaggggggggcggtggagTGGTCGACCGTCAACTTGTGTGCGTGCGTAT
CTGTGTCTTAAACCATGAACGTAGCCTTCAAGAAGGCCATGGCAATAGGA
CTCGATGGTATTCAGGCGCCTGCCAACGCAAATTAGCACGAATGCGTCCG
TCGTTTCTGAGTCCTTGA
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Synonyms
Publications