rna7713, rna7713 (mRNA) Nannochloropsis gaditana

Overview
Namerna7713
Unique Namerna7713
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length480
Alignment locationCM002473.1:154525..155992 +

Link to JBrowse

Properties
Property NameValue
ProductCyclophilin-like peptidyl-prolyl cis-trans isomerase domain protein
Orig transcript idgnl|cribi|Naga_101053g2.4089.mrna
Orig protein idgnl|cribi|Naga_101053g2.4089
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:154525..155992 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101053g2gene7467Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7713rna7713-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22980.1cds7692Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7713 ID=rna7713|Name=rna7713|organism=Nannochloropsis gaditana|type=mRNA|length=480bp
AAAGTCTTTACTGCGACGCCTGCCTGCCTCACACTCATGACACAACAGCA
TCACAGGATACATGATGAGGACCGTGGTTGTCTTGAGCCTTCTCTTGGGG
GCGAATGCCTTTCAGGCCCCCTTCCTTTCCCGGGTCGCACCGGGGGCCCA
GAGCCTGCGCTCCAACGACTTCACCACCACGGAAGCCTTCGAACCCTCCA
TCCATCCCTCCCTGTCCCGGCCCCGCGGCCAGTCCATTCGGATGGACGGA
AAGAGTAACGCCATCCGCGGGCGCATCACCTCCGTGAAGAGCACTAAGAA
GATCACGGAGGCCATGCGTCTGGTGGCTGCGGCGAAGGTCCGTCGCGCCC
AGGAGGCGGTCCTCTCCACGCGCCCCTTCAACGAGGGCCTTCAATCCGTC
TTCTCGGGCCTGGTCCAGCGCCTCGCCCTCGAGAACATCGAGCTCCCGCT
CCTCCAGGACCGGCCCGTCAAGTCCGTGAC
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protein sequence of rna7713

>rna7713-protein ID=rna7713-protein|Name=rna7713|organism=Nannochloropsis gaditana|type=polypeptide|length=309bp
MSSFRNDKKSLPAILGDTYVYFDLSVGGVPEGRLVFLLYNHVTPQTCENF
RALCTGEKGLSKFSRKKLHYKGSVFHRIIPGFMAQGGDYTAGNGTGGESV
YGPTFPDENFRVEHGRAGLLSMANAGPDTNGSQFFLTFRRTPHLDGKHVV
FGEVHREILPGQRAGHGPSPDLKFKILKRLERVETTGADLPVLTERVVVT
GCGEWERGGGMEGEEEGEGKKRKKRKREHVSDAEDGRKEASEEEEARRKR
RKQDERKWKKKEKRREEERVEGAEKSKREKKERKARGKEGKRESRKEKKR
RKEAREREE
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mRNA from alignment at CM002473.1:154525..155992+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7713 ID=rna7713|Name=rna7713|organism=Nannochloropsis gaditana|type=mRNA|length=1468bp|location=Sequence derived from alignment at CM002473.1:154525..155992+ (Nannochloropsis gaditana)
ATGTCATCCTTTCGAAATGACAAAAAATCGCTACCCGCAATTTTGGGTGA
CACCTACGTGTATTTTGACCTGAGCGTGGGTGGTGTCCCGGAGGGccgcc
tcgtctttctcctctacAATCACGTGACGCCGCAAACGTGTGAAAACTTC
CGGGCGCTTTGTACCGGGGAGAAAGGTTTATCCAAATTTTCACGTAAGGC
GGGGAAAAGGTCaagagggcttggaggatgAAAATAATGTTAGTGTGAGC
ATAAATTCGAGCATGCGGGTGTCGCGGTGTGtggtcatggaggagaaaga
gcagaGCCCGAAGTCGATGTTCGAGACAACAAAAGGAGACACAATTCGTT
CCCGAGTGGATTGACGGGGGAAAGTTGAATGGCTTTTGGAaacacatcct
cctccagggggTCGGTGCGGGGATCTGTCCCCATCTCGGTATGTGACCAG
GACCCTCATACCCCcgcctcgctcttcctctcttagGAAAGAAGCTGCAT
TACAAGGGCTCTGTCTTCCATCGAATCATCCCGGGTTTCATGGCTCAGGG
AGGGGACTATACAGCAGGGAACGGGACAGGGGGAGAGAGCGTTTACGGGT
GGGCTGCggtggggtcggagggacagggagataagagggagggcgagagg
gaggaaggggagacggagggcgggagggagggagggtagtgGAGGGCTTG
GTGCTTCAGAGACACCGCCCTTAGGGATGGCCAGCGTCAACGTGCCACGA
ATCTTGGAGACACACCTTATCCTTTAtgccatgccctccctccctctcct
tccctccctttttctctccctccctccctccctcccgccaaAGCCCCACC
TTTCCCGACGAGAATTTCCGCGTCGAGCACGGGCGggccggcctcctctc
catggccAACGCGGGCCCCGACACGAACGGCTCCCAGttcttcctcacct
tccgCCGCACCCCCCACCTCGACGGGAAGCACGTGGTCTTCGGAGAGGTC
CACCGGGAGATCTTGCCGGGACAAAGGGCTGGACACGGTCCTTCCCCCGA
TTtgaaattcaaaattttgaagcGGCTGGAGCGCGTCGAGACGACGGGCG
CGGATCTGCCTGTCTTGACagagagggtggtggtgacgggctgcggggag
tgggagcgagggggtgggatggagggagaggaggaaggagaggggaagaa
gaggaagaagaggaagcgggagcaTGTCTCGGATGCCGAGGATGGCCGCA
AGGAAGCctcggaagaggaagaggcacgtcggaagcggaggaagcaggac
gagaggaagtggaagaagaaggagaagaggagggaggaagaacgggtgga
gggcgcggaGAAGtcgaagagagagaagaaagagaggaaggcgagaggca
aagaaggcaaGAGGGAGTctaggaaggaaaagaagcgaagaaaagaggcc
agggagcgggaggaataA
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Coding sequence (CDS) from alignment at CM002473.1:154525..155992+

>rna7713 ID=rna7713|Name=rna7713|organism=Nannochloropsis gaditana|type=CDS|length=2790bp|location=Sequence derived from alignment at CM002473.1:154525..155992+ (Nannochloropsis gaditana)
ATGTCATCCTTTCGAAATGACAAAAAATCGCTACCCGCAATTTTGGGTGA
CACCTACGTGTATTTTGACCTGAGCGTGGGTGGTGTCCCGGAGGGccgcc
tcgtctttctcctctacAATCACGTGACGCCGCAAACGTGTGAAAACTTC
CGGGCGCTTTGTACCGGGGAGAAAGGTTTATCCAAATTTTCACGAAAGAA
GCTGCATTACAAGGGCTCTGTCTTCCATCGAATCATCCCGGGTTTCATGG
CTCAGGGAGGGGACTATACAGCAGGGAACGGGACAGGGGGAGAGAGCGTT
TACGGCCCCACCTTTCCCGACGAGAATTTCCGCGTCGAGCACGGGCGggc
cggcctcctctccatggccAACGCGGGCCCCGACACGAACGGCTCCCAGt
tcttcctcaccttccgCCGCACCCCCCACCTCGACGGGAAGCACGTGGTC
TTCGGAGAGGTCCACCGGGAGATCTTGCCGGGACAAAGGGCTGGACACGG
TCCTTCCCCCGATTtgaaattcaaaattttgaagcGGCTGGAGCGCGTCG
AGACGACGGGCGCGGATCTGCCTGTCTTGACagagagggtggtggtgacg
ggctgcggggagtgggagcgagggggtgggatggagggagaggaggaagg
agaggggaagaagaggaagaagaggaagcgggagcaTGTCTCGGATGCCG
AGGATGGCCGCAAGGAAGCctcggaagaggaagaggcacgtcggaagcgg
aggaagcaggacgagaggaagtggaagaagaaggagaagaggagggagga
agaacgggtggagggcgcggaGAAGtcgaagagagagaagaaagagagga
aggcgagaggcaaagaaggcaaGAGGGAGTctaggaaggaaaagaagcga
agaaaagaggccagggagcgggaggaataAATGTCATCCTTTCGAAATGA
CAAAAAATCGCTACCCGCAATTTTGGGTGACACCTACGTGTATTTTGACC
TGAGCGTGGGTGGTGTCCCGGAGGGccgcctcgtctttctcctctacAAT
CACGTGACGCCGCAAACGTGTGAAAACTTCCGGGCGCTTTGTACCGGGGA
GAAAGGTTTATCCAAATTTTCACGAAAGAAGCTGCATTACAAGGGCTCTG
TCTTCCATCGAATCATCCCGGGTTTCATGGCTCAGGGAGGGGACTATACA
GCAGGGAACGGGACAGGGGGAGAGAGCGTTTACGGCCCCACCTTTCCCGA
CGAGAATTTCCGCGTCGAGCACGGGCGggccggcctcctctccatggccA
ACGCGGGCCCCGACACGAACGGCTCCCAGttcttcctcaccttccgCCGC
ACCCCCCACCTCGACGGGAAGCACGTGGTCTTCGGAGAGGTCCACCGGGA
GATCTTGCCGGGACAAAGGGCTGGACACGGTCCTTCCCCCGATTtgaaat
tcaaaattttgaagcGGCTGGAGCGCGTCGAGACGACGGGCGCGGATCTG
CCTGTCTTGACagagagggtggtggtgacgggctgcggggagtgggagcg
agggggtgggatggagggagaggaggaaggagaggggaagaagaggaaga
agaggaagcgggagcaTGTCTCGGATGCCGAGGATGGCCGCAAGGAAGCc
tcggaagaggaagaggcacgtcggaagcggaggaagcaggacgagaggaa
gtggaagaagaaggagaagaggagggaggaagaacgggtggagggcgcgg
aGAAGtcgaagagagagaagaaagagaggaaggcgagaggcaaagaaggc
aaGAGGGAGTctaggaaggaaaagaagcgaagaaaagaggccagggagcg
ggaggaataAATGTCATCCTTTCGAAATGACAAAAAATCGCTACCCGCAA
TTTTGGGTGACACCTACGTGTATTTTGACCTGAGCGTGGGTGGTGTCCCG
GAGGGccgcctcgtctttctcctctacAATCACGTGACGCCGCAAACGTG
TGAAAACTTCCGGGCGCTTTGTACCGGGGAGAAAGGTTTATCCAAATTTT
CACGAAAGAAGCTGCATTACAAGGGCTCTGTCTTCCATCGAATCATCCCG
GGTTTCATGGCTCAGGGAGGGGACTATACAGCAGGGAACGGGACAGGGGG
AGAGAGCGTTTACGGCCCCACCTTTCCCGACGAGAATTTCCGCGTCGAGC
ACGGGCGggccggcctcctctccatggccAACGCGGGCCCCGACACGAAC
GGCTCCCAGttcttcctcaccttccgCCGCACCCCCCACCTCGACGGGAA
GCACGTGGTCTTCGGAGAGGTCCACCGGGAGATCTTGCCGGGACAAAGGG
CTGGACACGGTCCTTCCCCCGATTtgaaattcaaaattttgaagcGGCTG
GAGCGCGTCGAGACGACGGGCGCGGATCTGCCTGTCTTGACagagagggt
ggtggtgacgggctgcggggagtgggagcgagggggtgggatggagggag
aggaggaaggagaggggaagaagaggaagaagaggaagcgggagcaTGTC
TCGGATGCCGAGGATGGCCGCAAGGAAGCctcggaagaggaagaggcacg
tcggaagcggaggaagcaggacgagaggaagtggaagaagaaggagaaga
ggagggaggaagaacgggtggagggcgcggaGAAGtcgaagagagagaag
aaagagaggaaggcgagaggcaaagaaggcaaGAGGGAGTctaggaagga
aaagaagcgaagaaaagaggccagggagcgggaggaataA
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Synonyms
Publications