EWM22980.1, cds7692 (CDS) Nannochloropsis gaditana

Overview
NameEWM22980.1
Unique Namecds7692
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002473.1:154525..154717 +
Alignment locationCM002473.1:155011..155122 +
Alignment locationCM002473.1:155368..155992 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22980.1
ProductCyclophilin-like peptidyl-prolyl cis-trans isomerase domain protein
Orig transcript idgnl|cribi|Naga_101053g2.4089.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:154525..154717 +
CM002473.1supercontigCM002473.1:155011..155122 +
CM002473.1supercontigCM002473.1:155368..155992 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO:0006457protein folding
GO:0000413protein peptidyl-prolyl isomerization
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0003755peptidyl-prolyl cis-trans isomerase activity
Vocabulary: INTERPRO
TermDefinition
IPR020892Cyclophilin-type_PPIase_CS
IPR024936Cyclophilin-type_PPIase
IPR029000Cyclophilin-like_dom
IPR002130Cyclophilin-type_PPIase_dom
Homology
BLAST of EWM22980.1 vs. NCBI_GenBank
Match: gi|585103720|gb|EWM22980.1| (Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain protein [Nannochloropsis gaditana])

HSP 1 Score: 618.616 bits (1594), Expect = 0.000e+0
Identity = 309/309 (100.00%), Postives = 309/309 (100.00%), Query Frame = 0
Query:    1 MSSFRNDKKSLPAILGDTYVYFDLSVGGVPEGRLVFLLYNHVTPQTCENFRALCTGEKGLSKFSRKKLHYKGSVFHRIIPGFMAQGGDYTAGNGTGGESVYGPTFPDENFRVEHGRAGLLSMANAGPDTNGSQFFLTFRRTPHLDGKHVVFGEVHREILPGQRAGHGPSPDLKFKILKRLERVETTGADLPVLTERVVVTGCGEWERGGGMEGEEEGEGKKRKKRKREHVSDAEDGRKEASEEEEARRKRRKQDERKWKKKEKRREEERVEGAEKSKREKKERKARGKEGKRESRKEKKRRKEAREREE 309
            MSSFRNDKKSLPAILGDTYVYFDLSVGGVPEGRLVFLLYNHVTPQTCENFRALCTGEKGLSKFSRKKLHYKGSVFHRIIPGFMAQGGDYTAGNGTGGESVYGPTFPDENFRVEHGRAGLLSMANAGPDTNGSQFFLTFRRTPHLDGKHVVFGEVHREILPGQRAGHGPSPDLKFKILKRLERVETTGADLPVLTERVVVTGCGEWERGGGMEGEEEGEGKKRKKRKREHVSDAEDGRKEASEEEEARRKRRKQDERKWKKKEKRREEERVEGAEKSKREKKERKARGKEGKRESRKEKKRRKEAREREE
Sbjct:    1 MSSFRNDKKSLPAILGDTYVYFDLSVGGVPEGRLVFLLYNHVTPQTCENFRALCTGEKGLSKFSRKKLHYKGSVFHRIIPGFMAQGGDYTAGNGTGGESVYGPTFPDENFRVEHGRAGLLSMANAGPDTNGSQFFLTFRRTPHLDGKHVVFGEVHREILPGQRAGHGPSPDLKFKILKRLERVETTGADLPVLTERVVVTGCGEWERGGGMEGEEEGEGKKRKKRKREHVSDAEDGRKEASEEEEARRKRRKQDERKWKKKEKRREEERVEGAEKSKREKKERKARGKEGKRESRKEKKRRKEAREREE 309          
BLAST of EWM22980.1 vs. NCBI_GenBank
Match: gi|553185509|ref|XP_005854258.1| (cyclophilin, partial [Nannochloropsis gaditana CCMP526] >gi|422294803|gb|EKU22103.1| cyclophilin, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 215.312 bits (547), Expect = 1.259e-67
Identity = 101/102 (99.02%), Postives = 101/102 (99.02%), Query Frame = 0
Query:    1 MSSFRNDKKSLPAILGDTYVYFDLSVGGVPEGRLVFLLYNHVTPQTCENFRALCTGEKGLSKFSRKKLHYKGSVFHRIIPGFMAQGGDYTAGNGTGGESVYG 102
            MSSFRNDKKSLPAILGDTYVYFDLSVGGVPEGRLVFLLYNHVTPQTCENFRALCTGEKGLSKFS KKLHYKGSVFHRIIPGFMAQGGDYTAGNGTGGESVYG
Sbjct:    1 MSSFRNDKKSLPAILGDTYVYFDLSVGGVPEGRLVFLLYNHVTPQTCENFRALCTGEKGLSKFSGKKLHYKGSVFHRIIPGFMAQGGDYTAGNGTGGESVYG 102          
BLAST of EWM22980.1 vs. NCBI_GenBank
Match: gi|403343980|gb|EJY71326.1| (Peptidyl-prolyl cis-trans isomerase (macronuclear) [Oxytricha trifallax])

HSP 1 Score: 213.001 bits (541), Expect = 3.349e-64
Identity = 114/279 (40.86%), Postives = 177/279 (63.44%), Query Frame = 0
Query:   20 VYFDLSVGGVPEGRLVFLLYNHVTPQTCENFRALCTGEKGLSKFSRKKLHYKGSVFHRIIPGFMAQGGDYTAGNGTGGESVYGPTFPDENFRVEHGRAGLLSMANAGPDTNGSQFFLTFRRTPHLDGKHVVFGEVHREILPGQRAGHGPSPDLKFKILKRLERVETTGADLPVLTERVVVTGCGEWERGGGMEGEEEGEGKKRKKRKREHVSDAEDGRKEASEEEEARRKRRKQDERKWKKKEKRREEERVEGAEKSKREKKERKARGKEGKRESRKEK 298
            V+F++ +GG P+G++V  L+ +VTP+T ENFR LCTGE G    + K L +K SVFHR+I  FM QGGD+TA NGTGGES+YG TFPDENF+++H + GLLSMANAG +TNGSQFF+T+  TPHL+GKH VFG+V                +  + I +++ER+     D P   E+VV+  CGE ++    + E++ +  ++   K+      E+ ++++S +E  R+    +D+ K +K E+ R  E+ +  +K ++  K+ + + K  +RES+ +K
Sbjct:   14 VFFEIEIGGKPQGKIVMELFKNVTPRTAENFRQLCTGESGKRSSNGKVLSFKNSVFHRVIREFMMQGGDFTAFNGTGGESIYGRTFPDENFKLKHTQKGLLSMANAGKNTNGSQFFITYAVTPHLNGKHCVFGKV----------------ESGYDICQKIERLRCDRNDKP--QEKVVIVNCGEVKK----QVEQKPQVTEKADVKQAQKHGKEEEKQQSSHQE--RKAVNPEDKEKARKVERSRSREKNDTTDKVRQHNKDSEDQQKHHRRESQHDK 268          
BLAST of EWM22980.1 vs. NCBI_GenBank
Match: gi|661892522|emb|CDP03680.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 223.016 bits (567), Expect = 4.036e-64
Identity = 113/237 (47.68%), Postives = 151/237 (63.71%), Query Frame = 0
Query:   17 DTYVYFDLSVGGVPEGRLVFLLYNHVTPQTCENFRALCTGEKGLSKFSRKKLHYKGSVFHRIIPGFMAQGGDYTAGNGTGGESVYGPTFPDENFRVEHGRAGLLSMANAGPDTNGSQFFLTFRRTPHLDGKHVVFGEVHREILPGQRAGHGPSPDLKFKILKRLERVETTGADLPVLTERVVVTGCGEWERGGGMEGEEEGEGKKRKKRKREHVSDAEDGRKEASEEEEARRKRRKQ 253
            +  V+FD+S+ G P  R+   L+  V P+T ENFRALCTGEKG+   + K LHYKGS FHRII GFMAQGGD++ GNGTGGES+YG  FPDENF+++H  AGLLSMAN+GP+TNGSQFF+TF+R PHLDGKHVVFG+V   +                ++++R+ERV T       +   V +   GE  +    +      G+K+K  K     D+ DGR + + + E  RKR+K+
Sbjct:    6 NPLVFFDVSIDGSPAERITIELFADVVPKTAENFRALCTGEKGIGSSTGKPLHYKGSSFHRIIKGFMAQGGDFSKGNGTGGESIYGGKFPDENFKLDHSEAGLLSMANSGPNTNGSQFFITFKRQPHLDGKHVVFGKVVEGM----------------EVIRRVERVGTADGKPSGV---VKIVDSGETSQSSTHDAFGTQTGRKKKSAKPVSPDDSSDGRVKGNRKSEDWRKRKKR 223          
BLAST of EWM22980.1 vs. NCBI_GenBank
Match: gi|72011327|gb|AAZ66132.1| (cyclophilin [Sterkiella histriomuscorum] >gi|72011330|gb|AAZ66134.1| cyclophilin [Sterkiella histriomuscorum])

HSP 1 Score: 211.846 bits (538), Expect = 1.065e-63
Identity = 113/279 (40.50%), Postives = 177/279 (63.44%), Query Frame = 0
Query:   20 VYFDLSVGGVPEGRLVFLLYNHVTPQTCENFRALCTGEKGLSKFSRKKLHYKGSVFHRIIPGFMAQGGDYTAGNGTGGESVYGPTFPDENFRVEHGRAGLLSMANAGPDTNGSQFFLTFRRTPHLDGKHVVFGEVHREILPGQRAGHGPSPDLKFKILKRLERVETTGADLPVLTERVVVTGCGEWERGGGMEGEEEGEGKKRKKRKREHVSDAEDGRKEASEEEEARRKRRKQDERKWKKKEKRREEERVEGAEKSKREKKERKARGKEGKRESRKEK 298
            V+F++ +GG P+G++V  L+ +VTP+T ENFR LCTGE G    + K L +K SVFHR+I  FM QGGD+TA NG+GGES+YG TFPDENF+++H + GLLSMANAG +TNGSQFF+T+  TPHL+GKH VFG+V                +  + I +++ER+     D P   E+VV+  CGE ++    + E++ +  ++   K+      E+ ++++S +E  R+    +D+ K +K E+ R  E+ +  +K ++  K+ + + K  +RES+ +K
Sbjct:   14 VFFEIEIGGKPQGKIVMELFKNVTPRTAENFRQLCTGESGKRSSNGKVLSFKNSVFHRVIREFMMQGGDFTAFNGSGGESIYGRTFPDENFKLKHTQKGLLSMANAGKNTNGSQFFITYAVTPHLNGKHCVFGKV----------------ESGYDICQKIERLRCDRNDKP--QEKVVIVNCGEVKK----QVEQKPQVTEKADVKQAQKHGKEEEKQQSSHQE--RKAVNPEDKEKARKVERSRSREKNDTTDKVRQHNKDSEDQQKHHRRESQHDK 268          
BLAST of EWM22980.1 vs. NCBI_GenBank
Match: gi|72011321|gb|AAZ66128.1| (cyclophilin [Uroleptus sp. WJC-2003])

HSP 1 Score: 209.92 bits (533), Expect = 3.457e-63
Identity = 98/184 (53.26%), Postives = 127/184 (69.02%), Query Frame = 0
Query:   20 VYFDLSVGGVPEGRLVFLLYNHVTPQTCENFRALCTGEKGLSKFSRKKLHYKGSVFHRIIPGFMAQGGDYTAGNGTGGESVYGPTFPDENFRVEHGRAGLLSMANAGPDTNGSQFFLTFRRTPHLDGKHVVFGEVHREILPGQRAGHGPSPDLKFKILKRLERVETTGADLPVLTERVVVTGCG 203
            VYFD+ +GG   GR+V  L+ ++ P+T ENFR LCTG  G +  + KKLH+K S+FHR+IP FM QGGD+T  NGTGGES+YG  F DENF+++H + GLLSMANAG +TNGSQFF+TF  TPHLDGKHVVFG V +                 F+I +++ER+ T   D+P  +ERVV+  CG
Sbjct:   12 VYFDIEIGGKSAGRIVMELFKNIVPRTAENFRLLCTGTSGKTSSNGKKLHFKNSIFHRVIPQFMMQGGDFTKFNGTGGESIYGTKFADENFKLKHTQRGLLSMANAGRNTNGSQFFITFTTTPHLDGKHVVFGRVEQ----------------GFEICQKIERLRTNSQDVP--SERVVIVDCG 177          
BLAST of EWM22980.1 vs. NCBI_GenBank
Match: gi|673045941|ref|XP_008876931.1| (hypothetical protein H310_11878 [Aphanomyces invadans] >gi|574467593|gb|ETV94616.1| hypothetical protein H310_11878 [Aphanomyces invadans])

HSP 1 Score: 206.838 bits (525), Expect = 2.057e-62
Identity = 116/245 (47.35%), Postives = 152/245 (62.04%), Query Frame = 0
Query:   15 LGDTYVYFDLSVGGVPEGRLVFLLYNHVTPQTCENFRALCTGEKGLSKFSRKKLHYKGSVFHRIIPGFMAQGGDYTAGNGTGGESVYGPTFPDENFRVEHGRAGLLSMANAGPDTNGSQFFLTFRRTPHLDGKHVVFGEVHREILPGQRAGHGPSPDLKFKILKRLERVETTGADLPVLTERVVVTGCGEWERGGGMEGEEEGEGKKRKKRKREHVSDAEDGRKEASEEEEARRKRRKQDERKWK 259
            + D  V+FD+ +GG   GR+VF LYN  TP+T ENFRALCTGEKG+ K +RK L YKGS+FHRII GFM QGGD++  NGTGGES+YG  F DENF  +H +AGLLSMANAG  TNGSQFF+T   T HL+GKHVVFGEV    + G             ++++ +  V     D PV  + VV+  CGE++         E    K++K+  + V      +KEA+ ++E   K   +DE+K K
Sbjct:    1 MPDQQVFFDIEIGGKKSGRIVFRLYND-TPKTSENFRALCTGEKGVGKTTRKPLTYKGSIFHRIIDGFMCQGGDFSNRNGTGGESIYGAKFKDENFIHKHTKAGLLSMANAGRHTNGSQFFITLAATKHLNGKHVVFGEV----VSG------------MQVVRAMAAVPKGRNDKPV--KDVVIADCGEYDEAAAAPKAHEKSKDKKRKQTDDEVPAKAPAKKEAAGQDEKTNKGGDEDEKKVK 226          
BLAST of EWM22980.1 vs. NCBI_GenBank
Match: gi|685295596|ref|XP_009138664.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase CYP63 [Brassica rapa])

HSP 1 Score: 214.927 bits (546), Expect = 7.514e-62
Identity = 104/210 (49.52%), Postives = 139/210 (66.19%), Query Frame = 0
Query:   17 DTYVYFDLSVGGVPEGRLVFLLYNHVTPQTCENFRALCTGEKGLSKFSRKKLHYKGSVFHRIIPGFMAQGGDYTAGNGTGGESVYGPTFPDENFRVEHGRAGLLSMANAGPDTNGSQFFLTFRRTPHLDGKHVVFGEVHREILPGQRAGHGPSPDLKFKILKRLERVETTGADLPVLTERVVVTGCGEWERGGGMEGEEEGEGKKRKKRK 226
            +  V+ D+S+GG P  R+V  L+ H+ P+T ENFRALCTGE GL K + K LH+KGS FHR+I GFMAQGGD++ GNGTGGES+YG  FPDENF ++H   G+LSMAN GP+TNGSQFF+ F+R PHLDGKHVVFG+V + +                +++K++E V T+       T  V +  CGE  +  G +  E+ +GK +K  K
Sbjct:    8 NPTVFLDVSIGGDPLERIVIELFAHLVPKTAENFRALCTGEAGLGKTTSKPLHFKGSSFHRVIKGFMAQGGDFSNGNGTGGESIYGGKFPDENFELDHEEGGVLSMANCGPNTNGSQFFILFKRQPHLDGKHVVFGKVVKGM----------------EVVKKMELVGTSDGK---PTSNVKIIDCGEVSQLKGEDAAEKDKGKLKKSSK 198          
BLAST of EWM22980.1 vs. NCBI_GenBank
Match: gi|923603298|ref|XP_013741818.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase CYP63-like [Brassica napus] >gi|923603312|ref|XP_013741823.1| PREDICTED: peptidyl-prolyl cis-trans isomerase CYP63-like [Brassica napus] >gi|674878306|emb|CDY53714.1| BnaAnng12550D [Brassica napus])

HSP 1 Score: 214.542 bits (545), Expect = 7.674e-62
Identity = 104/210 (49.52%), Postives = 139/210 (66.19%), Query Frame = 0
Query:   17 DTYVYFDLSVGGVPEGRLVFLLYNHVTPQTCENFRALCTGEKGLSKFSRKKLHYKGSVFHRIIPGFMAQGGDYTAGNGTGGESVYGPTFPDENFRVEHGRAGLLSMANAGPDTNGSQFFLTFRRTPHLDGKHVVFGEVHREILPGQRAGHGPSPDLKFKILKRLERVETTGADLPVLTERVVVTGCGEWERGGGMEGEEEGEGKKRKKRK 226
            +  V+ D+S+GG P  R+V  L+ H+ P+T ENFRALCTGE GL K + K LH+KGS FHR+I GFMAQGGD++ GNGTGGES+YG  FPDENF ++H   G+LSMAN GP+TNGSQFF+ F+R PHLDGKHVVFG+V + +                +++K++E V T+       T  V +  CGE  +  G +  E+ +GK +K  K
Sbjct:    8 NPTVFLDVSIGGDPLERIVIELFAHLVPKTAENFRALCTGEAGLGKTTSKPLHFKGSSFHRVIKGFMAQGGDFSNGNGTGGESIYGGKFPDENFELDHEEGGVLSMANCGPNTNGSQFFILFKRQPHLDGKHVVFGKVVKGM----------------EVVKKMELVGTSDGK---PTSNVKIIDCGEVSQLKGEDAAEKDKGKLKKSSK 198          
BLAST of EWM22980.1 vs. NCBI_GenBank
Match: gi|764534318|ref|XP_011458604.1| (PREDICTED: LOW QUALITY PROTEIN: peptidyl-prolyl cis-trans isomerase CYP63 [Fragaria vesca subsp. vesca])

HSP 1 Score: 216.083 bits (549), Expect = 1.585e-61
Identity = 118/242 (48.76%), Postives = 153/242 (63.22%), Query Frame = 0
Query:   20 VYFDLSVGGVPEGRLVFLLYNHVTPQTCENFRALCTGEKGLSKFSRKKLHYKGSVFHRIIPGFMAQGGDYTAGNGTGGESVYGPTFPDENFRVEHGRAGLLSMANAGPDTNGSQFFLTFRRTPHLDGKHVVFGEVHREILPGQRAGHGPSPDLKFKILKRLERVETTGADLPVLTERVVVTGCGEWERGGGMEGEEEGEGKKRKKRKREHVSDAEDGRKEASEEEEARRKRRKQDERKWKKK 261
            V+ D+S+   P  R+V  L+  V P+T ENFRALCTGEKG+ K + K LHYKGS FHRII GFMAQGGD++AGNGTGGES+YG  F DE F+++H + GLLSMANAGP+TNGSQFF+ F  TPHLDGKHVVFG+V + I                 ++K++E+    G D     + V +  CGE E        E+ +GKKRK  K   +S +ED    + EE   +RK+  ++ RK  KK
Sbjct:    9 VFLDVSINEAPTERIVIELFADVAPKTAENFRALCTGEKGIGKSTGKPLHYKGSQFHRIIKGFMAQGGDFSAGNGTGGESIYGGKFADEAFKLKHDKLGLLSMANAGPNTNGSQFFIIFNPTPHLDGKHVVFGKVTKGI----------------DVVKKMEKA---GTDSGKPLQPVKIVDCGEVENIKIPITTEKEKGKKRKSVK---ISSSED---RSDEEVRGKRKKSLKERRKRTKK 225          
The following BLAST results are available for this feature:
BLAST of EWM22980.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103720|gb|EWM22980.1|0.000e+0100.00Cyclophilin-like peptidyl-prolyl cis-trans isomera... [more]
gi|553185509|ref|XP_005854258.1|1.259e-6799.02cyclophilin, partial [Nannochloropsis gaditana CCM... [more]
gi|403343980|gb|EJY71326.1|3.349e-6440.86Peptidyl-prolyl cis-trans isomerase (macronuclear)... [more]
gi|661892522|emb|CDP03680.1|4.036e-6447.68unnamed protein product [Coffea canephora][more]
gi|72011327|gb|AAZ66132.1|1.065e-6340.50cyclophilin [Sterkiella histriomuscorum] >gi|72011... [more]
gi|72011321|gb|AAZ66128.1|3.457e-6353.26cyclophilin [Uroleptus sp. WJC-2003][more]
gi|673045941|ref|XP_008876931.1|2.057e-6247.35hypothetical protein H310_11878 [Aphanomyces invad... [more]
gi|685295596|ref|XP_009138664.1|7.514e-6249.52PREDICTED: peptidyl-prolyl cis-trans isomerase CYP... [more]
gi|923603298|ref|XP_013741818.1|7.674e-6249.52PREDICTED: peptidyl-prolyl cis-trans isomerase CYP... [more]
gi|764534318|ref|XP_011458604.1|1.585e-6148.76PREDICTED: LOW QUALITY PROTEIN: peptidyl-prolyl ci... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7713rna7713Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications