rna7712, rna7712 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7712
Unique Name	rna7712
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	705
Alignment location	CM002473.1:148424..149305 -

Link to JBrowse

Properties


Property Name	Value
Product	atp synthase gamma subunit
Orig transcript id	gnl\|cribi\|Naga_101191g1.7594.mrna
Orig protein id	gnl\|cribi\|Naga_101191g1.7594
Gene	AtpC
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002473.1	supercontig	CM002473.1:148424..149305 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
AtpC	gene7466	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7712	rna7712-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22982.1	cds7691	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002473.1:148424..149305-
coding sequence from alignment at CM002473.1:148424..149305-

mRNA sequence

>rna7712 ID=rna7712|Name=rna7712|organism=Nannochloropsis gaditana|type=mRNA|length=705bp
AGGGAGGAGGTGGGAGGTGCTGTGTGTCTTGATGGAGGGAGGGCGGGAGG
GAGGGGCCGAGGGAGGAGCCGGGGTCCACGACGTGGCCTGGGCCCCCCAA
GATGGGCCGGAGCTACCACTCCATCGCCTGCGCGGGCAGGGATAACCGCC
TCCGAGTGTTCACGTTGAGGCGCGCGGGGGAAGAGGCGGGCGGGAGGGGC
GGGGACTGGGGGTTCGATCCGAGTCGGGACGCGGAGGAGGTCGAGGTCGG
GGTCGAGGTCTGGCGCGTAGCCTGGAACGCGCTCGGAACCGTCTTGGCCT
CCACGGGGGAGGACGGGGCGGTGCGCTTGTGGCAGAAGGGGCAGGGGGGC
CGGTGGACCTTAGGCAGGGCCATGGCGCGACCGGTGCGGGGCCAGGGGGA
CGAAACGGTTTGGATGGAGAGGCCTTGAACGGAAATTCAAAATTTCCAAA
GGGGGCAAGGACGGTGGGTGCGGGCGGGGAGTCCTTCGAGGGGGAAGGGA
GGTGCGTGGGGTTGTAGTGGAGGGGGCGCAGGGATGAGCCTTAAGACCCG
CTTATTTGGCACGTGTGCTCGACAGTATCAGACATACGCTTACATAACAG
TGCCTAGAGCATGGCGGGTATGCCCGGGGTGAGGATAGAGGGGGGGATCG
AGGGAAGGGAGGAGGGCGGGGAGTGCGCCTGAAGCAACAGAAAAGAACTC
GCTGC

protein sequence of rna7712

>rna7712-protein ID=rna7712-protein|Name=rna7712|organism=Nannochloropsis gaditana|type=polypeptide|length=140bp
MMRTVVVLSLLLGANAFQAPFLSRVAPGAQSLRSNDFTTTEAFEPSIHPS
LSRPRGQSIRMDGKSNAIRGRITSVKSTKKITEAMRLVAAAKVRRAQEAV
LSTRPFNEGLQSVFSGLVQRLALENIELPLLQDRPVKSVT

mRNA from alignment at CM002473.1:148424..149305-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7712 ID=rna7712|Name=rna7712|organism=Nannochloropsis gaditana|type=mRNA|length=882bp|location=Sequence derived from alignment at CM002473.1:148424..149305- (Nannochloropsis gaditana)
AAAGTCTTTACTGCGACGCCTGCCTGCCTCACACTCATGACACAACAGCA
TCACAGGATACATGATGAGGACCGTGGTTGTCTTGAGCCTTCTCTTGGGG
GCGAATGCCTTTCAGGTAGGGTAGAGCGCGAGGGGTAGGGGAGGGTATCG
AGACGGAGGCGTTCAAGAGGATTCGGGTCACGTGCCGATTGAGATGGAAC
GTGTGTGCAGAGAGTAGGAGTTTAAACAGCGGAAGGGAAGGAAAGAAAGG
GAGACCGGTTGTCAAAGCATGGTGAGAGGGCAAAGATGCATCTCACGAGG
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCAGGCCCCCTTCCT
TTCCCGGGTCGCACCGGGGGCCCAGAGCCTGCGCTCCAACGACTTCACCA
CCACGGAAGCCTTCGAACCCTCCATCCATCCCTCCCTGTCCCGGCCCCGC
GGCCAGTCCATTCGGATGGACGGAAAGAGTAACGCCATCCGCGGGCGCAT
CACCTCCGTGAAGAGCACTAAGAAGATCACGGAGGCCATGCGTCTGGTGG
CTGCGGCGAAGGTGGGGAAAAAGGGAGGGAAGGAGGGAGGGAGGAAGGGA
GGAAGGGAGGGAGGGAGGATCGGGCGGGAGAGATAATTGGTGTCTGATGG
GAAGGACAAGAGGCACGGAGGAGACAAGAGGGGAAAGAAAAGCTTCGATT
TGCTGATCGTTCCCTCCCTCCCTCCCTCCCTTTCTCCAGGTCCGTCGCGC
CCAGGAGGCGGTCCTCTCCACGCGCCCCTTCAACGAGGGCCTTCAATCCG
TCTTCTCGGGCCTGGTCCAGCGCCTCGCCCTCGAGAACATCGAGCTCCCG
CTCCTCCAGGACCGGCCCGTCAAGTCCGTGAC

Coding sequence (CDS) from alignment at CM002473.1:148424..149305-

>rna7712 ID=rna7712|Name=rna7712|organism=Nannochloropsis gaditana|type=CDS|length=1257bp|location=Sequence derived from alignment at CM002473.1:148424..149305- (Nannochloropsis gaditana)
GTCCGTCGCGCCCAGGAGGCGGTCCTCTCCACGCGCCCCTTCAACGAGGG
CCTTCAATCCGTCTTCTCGGGCCTGGTCCAGCGCCTCGCCCTCGAGAACA
TCGAGCTCCCGCTCCTCCAGGACCGGCCCGTCAAGTCCGTGACGCCCCCT
TCCTTTCCCGGGTCGCACCGGGGGCCCAGAGCCTGCGCTCCAACGACTTC
ACCACCACGGAAGCCTTCGAACCCTCCATCCATCCCTCCCTGTCCCGGCC
CCGCGGCCAGTCCATTCGGATGGACGGAAAGAGTAACGCCATCCGCGGGC
GCATCACCTCCGTGAAGAGCACTAAGAAGATCACGGAGGCCATGCGTCTG
GTGGCTGCGGCGAAGATGATGAGGACCGTGGTTGTCTTGAGCCTTCTCTT
GGGGGCGAATGCCTTTCAGGTCCGTCGCGCCCAGGAGGCGGTCCTCTCCA
CGCGCCCCTTCAACGAGGGCCTTCAATCCGTCTTCTCGGGCCTGGTCCAG
CGCCTCGCCCTCGAGAACATCGAGCTCCCGCTCCTCCAGGACCGGCCCGT
CAAGTCCGTGACGCCCCCTTCCTTTCCCGGGTCGCACCGGGGGCCCAGAG
CCTGCGCTCCAACGACTTCACCACCACGGAAGCCTTCGAACCCTCCATCC
ATCCCTCCCTGTCCCGGCCCCGCGGCCAGTCCATTCGGATGGACGGAAAG
AGTAACGCCATCCGCGGGCGCATCACCTCCGTGAAGAGCACTAAGAAGAT
CACGGAGGCCATGCGTCTGGTGGCTGCGGCGAAGATGATGAGGACCGTGG
TTGTCTTGAGCCTTCTCTTGGGGGCGAATGCCTTTCAGGTCCGTCGCGCC
CAGGAGGCGGTCCTCTCCACGCGCCCCTTCAACGAGGGCCTTCAATCCGT
CTTCTCGGGCCTGGTCCAGCGCCTCGCCCTCGAGAACATCGAGCTCCCGC
TCCTCCAGGACCGGCCCGTCAAGTCCGTGACGCCCCCTTCCTTTCCCGGG
TCGCACCGGGGGCCCAGAGCCTGCGCTCCAACGACTTCACCACCACGGAA
GCCTTCGAACCCTCCATCCATCCCTCCCTGTCCCGGCCCCGCGGCCAGTC
CATTCGGATGGACGGAAAGAGTAACGCCATCCGCGGGCGCATCACCTCCG
TGAAGAGCACTAAGAAGATCACGGAGGCCATGCGTCTGGTGGCTGCGGCG
AAGATGATGAGGACCGTGGTTGTCTTGAGCCTTCTCTTGGGGGCGAATGC
CTTTCAG

Synonyms

Publications