EWM22982.1, cds7691 (CDS) Nannochloropsis gaditana

Overview
NameEWM22982.1
Unique Namecds7691
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002473.1:149191..149244 -
Alignment locationCM002473.1:148745..148966 -
Alignment locationCM002473.1:148424..148566 -

Link to JBrowse

Properties
Property NameValue
Start range148424
Start range.
Protein idEWM22982.1
Productatp synthase gamma subunit
Partialtrue
Orig transcript idgnl|cribi|Naga_101191g1.7594.mrna
GeneAtpC
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:149191..149244 -
CM002473.1supercontigCM002473.1:148745..148966 -
CM002473.1supercontigCM002473.1:148424..148566 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0005215transporter activity
GO:0016740transferase activity
GO:0046961proton-transporting ATPase activity, rotational mechanism
GO:0046933proton-transporting ATP synthase activity, rotational mechanism
Vocabulary: Cellular Component
TermDefinition
GO:0009579thylakoid
GO:0005739mitochondrion
GO:0016020membrane
GO:0009507chloroplast
GO:0045261proton-transporting ATP synthase complex, catalytic core F(1)
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0015986ATP synthesis coupled proton transport
Vocabulary: INTERPRO
TermDefinition
IPR023633ATPase_F1_gsu_dom
IPR000131ATPase_F1-cplx_gsu
Homology
[Close]
BLAST of EWM22982.1 vs. NCBI_GenBank
Match: gi|585103724|gb|EWM22982.1| (atp synthase gamma subunit, partial [Nannochloropsis gaditana])

HSP 1 Score: 278.87 bits (712), Expect = 5.712e-95
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0 
Query:    1 MMRTVVVLSLLLGANAFQAPFLSRVAPGAQSLRSNDFTTTEAFEPSIHPSLSRPRGQSIRMDGKSNAIRGRITSVKSTKKITEAMRLVAAAKVRRAQEAVLSTRPFNEGLQSVFSGLVQRLALENIELPLLQDRPVKSVT 140
            MMRTVVVLSLLLGANAFQAPFLSRVAPGAQSLRSNDFTTTEAFEPSIHPSLSRPRGQSIRMDGKSNAIRGRITSVKSTKKITEAMRLVAAAKVRRAQEAVLSTRPFNEGLQSVFSGLVQRLALENIELPLLQDRPVKSVT
Sbjct:    1 MMRTVVVLSLLLGANAFQAPFLSRVAPGAQSLRSNDFTTTEAFEPSIHPSLSRPRGQSIRMDGKSNAIRGRITSVKSTKKITEAMRLVAAAKVRRAQEAVLSTRPFNEGLQSVFSGLVQRLALENIELPLLQDRPVKSVT 140
[Close]
BLAST of EWM22982.1 vs. NCBI_GenBank
Match: gi|28565375|gb|AAO43198.1| (chloroplast ATPase gamma subunit precursor [Phaeodactylum tricornutum])

HSP 1 Score: 124.79 bits (312), Expect = 1.045e-31
Identity = 63/93 (67.74%), Postives = 76/93 (81.72%), Query Frame = 0 
Query:   48 HPSLSRPRGQSIRMDGKSNAIRGRITSVKSTKKITEAMRLVAAAKVRRAQEAVLSTRPFNEGLQSVFSGLVQRLALENIELPLLQDRPVKSVT 140
              S  R R  +I MDGK+NAIR RITSVK+T+KIT AM+LVAAAKVRRAQ+AVL+TRPF+E LQSVF GL+QRL  E+++LPLL +R VK VT
Sbjct:   41 QSSAHRTRKATIVMDGKANAIRDRITSVKNTRKITMAMKLVAAAKVRRAQDAVLATRPFSETLQSVFGGLIQRLGGESVDLPLLTEREVKKVT 133
[Close]
BLAST of EWM22982.1 vs. NCBI_GenBank
Match: gi|219119491|ref|XP_002180505.1| (precursor of ATPase ATPase gamma subunit [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407978|gb|EEC47913.1| precursor of ATPase ATPase gamma subunit [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 124.79 bits (312), Expect = 1.056e-31
Identity = 63/93 (67.74%), Postives = 76/93 (81.72%), Query Frame = 0 
Query:   48 HPSLSRPRGQSIRMDGKSNAIRGRITSVKSTKKITEAMRLVAAAKVRRAQEAVLSTRPFNEGLQSVFSGLVQRLALENIELPLLQDRPVKSVT 140
              S  R R  +I MDGK+NAIR RITSVK+T+KIT AM+LVAAAKVRRAQ+AVL+TRPF+E LQSVF GL+QRL  E+++LPLL +R VK VT
Sbjct:   41 QSSAHRTRKATIVMDGKANAIRDRITSVKNTRKITMAMKLVAAAKVRRAQDAVLATRPFSETLQSVFGGLIQRLGGESVDLPLLTEREVKKVT 133
[Close]
BLAST of EWM22982.1 vs. NCBI_GenBank
Match: gi|397626071|gb|EJK68017.1| (hypothetical protein THAOC_10857 [Thalassiosira oceanica])

HSP 1 Score: 124.02 bits (310), Expect = 2.221e-31
Identity = 64/100 (64.00%), Postives = 76/100 (76.00%), Query Frame = 0 
Query:   41 EAFEPSIHPSLSRPRGQSIRMDGKSNAIRGRITSVKSTKKITEAMRLVAAAKVRRAQEAVLSTRPFNEGLQSVFSGLVQRLALENIELPLLQDRPVKSVT 140
            + F P+ H    R R  +I MDGK+NAIR RITSV +TKKIT AM+LVAAAKVRRAQ+AVL+TRPF+E LQSVF GL+QRL  E ++LPLL  R V  VT
Sbjct:   34 DVFAPATH----RTRRSTIVMDGKANAIRDRITSVNNTKKITSAMKLVAAAKVRRAQDAVLATRPFSETLQSVFGGLIQRLGGEAVDLPLLTQREVNKVT 129
[Close]
BLAST of EWM22982.1 vs. NCBI_GenBank
Match: gi|1072231575|gb|OEU16307.1| (chloroplast ATPase gamma subunit precursor [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 120.939 bits (302), Expect = 3.589e-30
Identity = 76/146 (52.05%), Postives = 93/146 (63.70%), Query Frame = 0 
Query:    2 MRTVVVLSLLLGANAFQAPFLSRVAPGAQSLRSNDFTTT------EAFEPSIHPSLSRP-RGQSIRMDGKSNAIRGRITSVKSTKKITEAMRLVAAAKVRRAQEAVLSTRPFNEGLQSVFSGLVQRLALENIELPLLQDRPVKSVT 140
            MR   + + L  ANAF +       P A       FTT+       A +  + PS S   R  +I MDGK+NAIR RI+SVK+TKKIT AM+LVAAAKVRRAQ+AVL+TRPF+E LQSVF GL+ RL  E ++LPLL  R VK VT
Sbjct:    1 MRFFCLAAFLATANAFTS------GPAA-------FTTSVPAVGGRALDNVVAPSQSHANRRATIVMDGKANAIRDRISSVKNTKKITMAMKLVAAAKVRRAQDAVLATRPFSETLQSVFGGLIARLGGEAMDLPLLTQREVKKVT 133
[Close]
BLAST of EWM22982.1 vs. NCBI_GenBank
Match: gi|543876|sp|Q06908.1|ATPG_ODOSI (RecName: Full=ATP synthase gamma chain, chloroplastic; AltName: Full=F-ATPase gamma subunit; Flags: Precursor >gi|288749|emb|CAA49993.1| adenosinetriphosphatase [Odontella sinensis])

HSP 1 Score: 119.013 bits (297), Expect = 1.762e-29
Identity = 64/102 (62.75%), Postives = 77/102 (75.49%), Query Frame = 0 
Query:   39 TTEAFEPSIHPSLSRPRGQSIRMDGKSNAIRGRITSVKSTKKITEAMRLVAAAKVRRAQEAVLSTRPFNEGLQSVFSGLVQRLALENIELPLLQDRPVKSVT 140
            T+  F  S  P+  R R  +I MDGK+NAIR RITSVK+TKKIT AM+LVAAAKVRRAQ+AVL+TRPF+E LQSVF GL+ R+  E ++LPLL  R V  VT
Sbjct:   34 TSNVFSESSSPA-HRNRRATIVMDGKANAIRDRITSVKNTKKITMAMKLVAAAKVRRAQDAVLATRPFSETLQSVFGGLIARMGGEALDLPLLTQREVSKVT 134
[Close]
BLAST of EWM22982.1 vs. NCBI_GenBank
Match: gi|2493034|sp|Q41075.1|ATPG_PHATR (RecName: Full=ATP synthase gamma chain, chloroplastic; AltName: Full=F-ATPase gamma subunit; Flags: Precursor >gi|912580|gb|AAA73506.1| AtpC [Phaeodactylum tricornutum])

HSP 1 Score: 117.472 bits (293), Expect = 6.200e-29
Identity = 62/94 (65.96%), Postives = 75/94 (79.79%), Query Frame = 0 
Query:   48 HPSLSRPRGQSIRMDGKSNAIRGRITSVKSTKKITEAMRLV-AAAKVRRAQEAVLSTRPFNEGLQSVFSGLVQRLALENIELPLLQDRPVKSVT 140
              S  R R  +I MDGK+NAIR RITSVK+T+KIT AM+LV AA KVRRAQ+AVL+TRPF+E LQSVF GL+QRL  E+++LPLL +R VK VT
Sbjct:   41 QSSAHRTRKATIVMDGKANAIRDRITSVKNTRKITMAMKLVRAAPKVRRAQDAVLATRPFSETLQSVFGGLIQRLGGESVDLPLLTEREVKKVT 134
[Close]
BLAST of EWM22982.1 vs. NCBI_GenBank
Match: gi|1210514100|dbj|GAX26882.1| (F-type H+-transporting ATPase subunit gamma [Fistulifera solaris])

HSP 1 Score: 116.316 bits (290), Expect = 1.576e-28
Identity = 60/94 (63.83%), Postives = 74/94 (78.72%), Query Frame = 0 
Query:   48 HPSLS-RPRGQSIRMDGKSNAIRGRITSVKSTKKITEAMRLVAAAKVRRAQEAVLSTRPFNEGLQSVFSGLVQRLALENIELPLLQDRPVKSVT 140
             P L+ R R  ++  DGK+NAIR RI +VK+T KIT+AM+LVAAAKVRRAQ+AVL+TRPF+E LQSVF GL+QRL  E ++LPLL  R VK VT
Sbjct:   20 QPGLAHRTRQATVVFDGKANAIRDRIKNVKNTGKITKAMKLVAAAKVRRAQDAVLATRPFSETLQSVFGGLIQRLDGEAVDLPLLTQREVKKVT 113
[Close]
BLAST of EWM22982.1 vs. NCBI_GenBank
Match: gi|729042215|dbj|BAP91042.1| (precursor of ATPase gamma subunit [Fistulifera solaris] >gi|1210530170|dbj|GAX11086.1| F-type H+-transporting ATPase subunit gamma [Fistulifera solaris])

HSP 1 Score: 115.931 bits (289), Expect = 1.751e-28
Identity = 60/94 (63.83%), Postives = 74/94 (78.72%), Query Frame = 0 
Query:   48 HPSLS-RPRGQSIRMDGKSNAIRGRITSVKSTKKITEAMRLVAAAKVRRAQEAVLSTRPFNEGLQSVFSGLVQRLALENIELPLLQDRPVKSVT 140
             P L+ R R  ++  DGK+NAIR RI +VK+T KIT+AM+LVAAAKVRRAQ+AVL+TRPF+E LQSVF GL+QRL  E ++LPLL  R VK VT
Sbjct:   20 QPGLAHRTRQATVVYDGKANAIRDRIKNVKNTGKITKAMKLVAAAKVRRAQDAVLATRPFSETLQSVFGGLIQRLDGEAVDLPLLTQREVKKVT 113
[Close]
BLAST of EWM22982.1 vs. NCBI_GenBank
Match: gi|223998931|ref|XP_002289138.1| (ATP synthase [Thalassiosira pseudonana CCMP1335] >gi|220974346|gb|EED92675.1| ATP synthase [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 114.775 bits (286), Expect = 7.234e-28
Identity = 59/88 (67.05%), Postives = 69/88 (78.41%), Query Frame = 0 
Query:   53 RPRGQSIRMDGKSNAIRGRITSVKSTKKITEAMRLVAAAKVRRAQEAVLSTRPFNEGLQSVFSGLVQRLALENIELPLLQDRPVKSVT 140
            R R  +I MDGK+NAIR RITSV +TKKIT AM+LVAAAKVRRAQ++VL+TRPF+E LQSVF GL+ RL  E  +LPLL  R V  VT
Sbjct:   44 RNRRATIVMDGKANAIRDRITSVNNTKKITSAMKLVAAAKVRRAQDSVLATRPFSETLQSVFGGLINRLGGEAADLPLLTQREVNKVT 131
The following BLAST results are available for this feature:
BLAST of EWM22982.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103724|gb|EWM22982.1|5.712e-95100.00atp synthase gamma subunit, partial [Nannochlorops... [more]
gi|28565375|gb|AAO43198.1|1.045e-3167.74chloroplast ATPase gamma subunit precursor [Phaeod... [more]
gi|219119491|ref|XP_002180505.1|1.056e-3167.74precursor of ATPase ATPase gamma subunit [Phaeodac... [more]
gi|397626071|gb|EJK68017.1|2.221e-3164.00hypothetical protein THAOC_10857 [Thalassiosira oc... [more]
gi|1072231575|gb|OEU16307.1|3.589e-3052.05chloroplast ATPase gamma subunit precursor [Fragil... [more]
gi|543876|sp|Q06908.1|ATPG_ODOSI1.762e-2962.75RecName: Full=ATP synthase gamma chain, chloroplas... [more]
gi|2493034|sp|Q41075.1|ATPG_PHATR6.200e-2965.96RecName: Full=ATP synthase gamma chain, chloroplas... [more]
gi|1210514100|dbj|GAX26882.1|1.576e-2863.83F-type H+-transporting ATPase subunit gamma [Fistu... [more]
gi|729042215|dbj|BAP91042.1|1.751e-2863.83precursor of ATPase gamma subunit [Fistulifera sol... [more]
gi|223998931|ref|XP_002289138.1|7.234e-2867.05ATP synthase [Thalassiosira pseudonana CCMP1335] >... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7712rna7712Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications