rna7711, rna7711 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7711
Unique Name	rna7711
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1925
Alignment location	CM002473.1:146914..147618 +

Link to JBrowse

Properties


Property Name	Value
Product	uncharacterized protein
Orig transcript id	gnl\|cribi\|Naga_102334g1.3227.mrna
Orig protein id	gnl\|cribi\|Naga_102334g1.3227
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002473.1	supercontig	CM002473.1:146914..147618 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_102334g1	gene7465	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7711	rna7711-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22983.1	cds7690	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002473.1:146914..147618+
coding sequence from alignment at CM002473.1:146914..147618+

mRNA sequence

>rna7711 ID=rna7711|Name=rna7711|organism=Nannochloropsis gaditana|type=mRNA|length=1925bp
CATTCGGAGGGAAAAAGGCCGGAAATGTCTCTACCTTCTACCTCTTACAT
CGAAATGGCGTCGGTCCTTTCAAAACACCGTTATCGTCCTGTGTTCTGCG
TAAGTGAGGAAGTTGCGAGTTGTGCTGCGGATCGATGACGCTTTTGGCGG
CTTTGATGAACATTTCGGCCGCTCTCAGGGCCTGTTCCTCCCGAGATGGC
ACGCAGTATCCCGACCAACCTAGATAATGGAGTCTTGAATCTCCTCCAGT
ATCACCCGATGGCAAAGCAGCCCCTCCTGCAAGCGCACGCAGGACCTTGA
CGTTCATTTTCTCAGCAGCTCTTGCCCCCCCTCTGAGAACAGCACAAATG
CCCACCACACCTGCGATCTGCTCCACGAAACCGAATCCTATCCATCAATC
CATTGTATTGGGGTATTATGGGTAAATATTTCTAGTTGCTAAATGAAATA
TGGAAGCGAAAGTGTTGAAGTGGGGGACGAGAATGGGCAAGGAGAAGAAA
TTTGAAGCAAAAAAAATATTTCCCTCGAATATTTCCTACATCCTGAGGGA
ATATTCTGTGCCATGGTAAGACCGACCATTTTTTGGGAGGGGTATAATCA
ATTTATGTCAGAGAAAGAATTTTAGAAGCCAAACATTGTGCATTTTTGGG
GGAGGTATAGTAAGGCGGGAGCCTAGTTAAGATTGTGTACCTTTCCTTGT
CTGTACAGAAACCAGTTCATTGTTAGGAAATGCTTCGGGACCACCAACCA
AAAGAGCAAAAAAGGTCGAAAAGAAGAGAAGGAGGCATCCATGATAAGAG
TATGTATTGATTTTTAGTACAGAGATCAGGGAGGACGTCAAAACGTACCC
GGATACTTTCCCTCCGCTTCCAGCGCCTGAAAGCAACCGCTGGCCCCACC
TTGGCGTACTTTAAAGCACCTTTCGTTCAGGCAGCGAAAGATATTTCCAG
ACCAAAGAAAGAGGATTGTGAAGCAAACTTCGAATTCAGCATTTGAATCT
TGTGCCGCGCAAGTTTGTGGGGAGACAATCCCAGCAGCATAACCTCCTCT
ACCACCCACAACTGATGTGAAAGTACTTCAATTTCACTTGACGATCGACA
ATTGGGGACACATCAACATGGATTCTGGGCATGATTACTACGTCCTGGAC
GCACAGTATGATTTTTATGGGCGGCGCTTCGCGACGTGCTCCTCCGACCA
TTCCATTCGGATCTGGGACCAGGTGCGACTCTGCCTTCCCTCCTTCCCTC
CCTCCCCCCTTCCCTCCCTCCCTCCCTCTCTCCCTCCTTCCCCCTCTCTC
CCCCTCCTCCCTTACCTTCCCCACTTTATTCTCTCTTTCAACCCTGTTTG
TCCGAGTTCCCTTCTCCCCCGACCCCTTCTTTCATCCCAGGTTCCTCGCT
TCTGTCCTCCTGTCCCTCCCCTGCTTCTACGCTTTTCATGCCCCCCGCCC
CCCCTTCCCTCCCTCCCTCCGCAGGCCCCCGACGGAACATGGAACCCGTC
CGCCCAGATCCTAAAAGCGAGTCGCTCCGCCCTTTCCCGTCTCTCTTGGG
CTAGCCCCGAGTACGGCACGTTGCTCGCCGTTGCCTCCGAGGACTCGACC
GTCTCCATCTGGGAGGAGCAAGCCAACCCGTCCTCGCCCTCCGCCCCGTC
CTCGCCCTCCGCCCCGTCCTCGACCTCGTCCTGGGTCTGTCGGGCCACCC
TCAAAGAGAGCTTGCGAGCGGTGACGGCCGTCGCCTTCGCGCCTCCGTGT
TGGGGGTTGCGACTCGCCACAGCGGCCACGGACGGCGTGGTCCGGGTCTA
CGAGGCGGTGGACGTGATGAACCTGGCGCTGTGGTCGCTCCAAGAGACCT
TTGAAGGCGGGCGGGAGGAGGGACGGCTCATGGTCCTTAGCTGGAACCCC
TGTCGCTTTGATCCGCCCATGCTGG

protein sequence of rna7711

>rna7711-protein ID=rna7711-protein|Name=rna7711|organism=Nannochloropsis gaditana|type=polypeptide|length=108bp
MGRSYHSIACAGRDNRLRVFTLRRAGEEAGGRGGDWGFDPSRDAEEVEVG
VEVWRVAWNALGTVLASTGEDGAVRLWQKGQGGRWTLGRAMARPVRGQGD
ETVWMERP

mRNA from alignment at CM002473.1:146914..147618+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7711 ID=rna7711|Name=rna7711|organism=Nannochloropsis gaditana|type=mRNA|length=705bp|location=Sequence derived from alignment at CM002473.1:146914..147618+ (Nannochloropsis gaditana)
agggaggaggtgggaggtgCTGTGTGTcttgatggagggagggcgggagg
gaggggccgagggaggagccggggTCCACGACGTGGCCTGGGCCCCCCAA
GATGGGCCGGAGCTACCACTCCATCGCCTGCGCGGGCAGGGATAACCGCC
TCCGAGTGTTCACGTTGAGGCgcgcgggggaagaggcgggcgggaggggc
ggggactgGGGGTTCGATCCGAGtcgggacgcggaggaggtcgaggtcGG
GGTCGAGGTCTGGCGCGTAGCCTGGAACGCGCTCGGAACCGTCTTGGCCT
ccacgggggaggacggggcggtgCGCTTGTGGcagaaggggcaggggggc
cgGTGGACCTTAGGCAGGGCCATGGCGCGACCGGtgcggggccaggggga
cGAAACGGTTTGGATGGAGAGGCCTTGAACGGAAATTCAAAATTTCCAAA
GGGGGCAAGGACGGTGGGTGCGGGCGGGGAGTCCttcgagggggaaggga
ggtgcgTGGGGTTGTAGTGGAGGGGGCGCAGGGATGAGCCTTAAGACCCG
CTTATTTGGCACGTGTGCTCGACAGTATCAGACATACGCTTACATAACAG
TGCCTAGAGCATGGCGGGTATGCCCGGGGTGAGGATAGAGGGGGGGatcg
agggaagggaggagggcggggagtgcGCCTGAAGCAACAGAAAAGAACTC
GCTGC

Coding sequence (CDS) from alignment at CM002473.1:146914..147618+

>rna7711 ID=rna7711|Name=rna7711|organism=Nannochloropsis gaditana|type=CDS|length=327bp|location=Sequence derived from alignment at CM002473.1:146914..147618+ (Nannochloropsis gaditana)
ATGGGCCGGAGCTACCACTCCATCGCCTGCGCGGGCAGGGATAACCGCCT
CCGAGTGTTCACGTTGAGGCgcgcgggggaagaggcgggcgggaggggcg
gggactgGGGGTTCGATCCGAGtcgggacgcggaggaggtcgaggtcGGG
GTCGAGGTCTGGCGCGTAGCCTGGAACGCGCTCGGAACCGTCTTGGCCTc
cacgggggaggacggggcggtgCGCTTGTGGcagaaggggcaggggggcc
gGTGGACCTTAGGCAGGGCCATGGCGCGACCGGtgcggggccagggggac
GAAACGGTTTGGATGGAGAGGCCTTGA

Synonyms

Publications