EWM22983.1, cds7690 (CDS) Nannochloropsis gaditana

Overview
NameEWM22983.1
Unique Namecds7690
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002473.1:147015..147341 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22983.1
Productuncharacterized protein
Orig transcript idgnl|cribi|Naga_102334g1.3227.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:147015..147341 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
Vocabulary: INTERPRO
TermDefinition
IPR011044Quino_amine_DH_bsu
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
Homology
BLAST of EWM22983.1 vs. NCBI_GenBank
Match: gi|585103727|gb|EWM22983.1| (uncharacterized protein Naga_102334g1 [Nannochloropsis gaditana])

HSP 1 Score: 213.386 bits (542), Expect = 5.960e-70
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0
Query:    1 MGRSYHSIACAGRDNRLRVFTLRRAGEEAGGRGGDWGFDPSRDAEEVEVGVEVWRVAWNALGTVLASTGEDGAVRLWQKGQGGRWTLGRAMARPVRGQGDETVWMERP 108
            MGRSYHSIACAGRDNRLRVFTLRRAGEEAGGRGGDWGFDPSRDAEEVEVGVEVWRVAWNALGTVLASTGEDGAVRLWQKGQGGRWTLGRAMARPVRGQGDETVWMERP
Sbjct:    1 MGRSYHSIACAGRDNRLRVFTLRRAGEEAGGRGGDWGFDPSRDAEEVEVGVEVWRVAWNALGTVLASTGEDGAVRLWQKGQGGRWTLGRAMARPVRGQGDETVWMERP 108          
BLAST of EWM22983.1 vs. NCBI_GenBank
Match: gi|1149728742|ref|XP_020140845.1| (nucleoporin SEH1-like, partial [Microcebus murinus])

HSP 1 Score: 72.4034 bits (176), Expect = 5.698e-14
Identity = 39/104 (37.50%), Postives = 57/104 (54.81%), Query Frame = 0
Query:    1 MGRSYHSIACAGRDNRLRVFTLRRAGEEAGGRGGDWGFDPSRDAEEVEVGVEVWRVAWNALGTVLASTGEDGAVRLWQKGQGGRWT---LGRAMARPVRGQGDE 101
            +GRS+H +A A +D  +R+FTL+   +E    GG   F+    A+      +VWRV+WN  GTVLAS+G+DG VRLW+      W    + +    PV G   +
Sbjct:    7 LGRSFHILAIATKD--VRIFTLKPVRKELTSSGGPTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSGDDGCVRLWKANYMDNWKCTGILKGNGSPVNGSSQQ 108          
BLAST of EWM22983.1 vs. NCBI_GenBank
Match: gi|699702974|ref|XP_009891614.1| (PREDICTED: nucleoporin SEH1, partial [Charadrius vociferus])

HSP 1 Score: 72.4034 bits (176), Expect = 7.852e-14
Identity = 39/107 (36.45%), Postives = 59/107 (55.14%), Query Frame = 0
Query:    1 MGRSYHSIACAGRDNRLRVFTLRRAGEEAGGRGGDWGFDPSRDAEEVEVGVEVWRVAWNALGTVLASTGEDGAVRLWQKGQGGRWT---LGRAMARPVRGQGDETVW 104
            +GRS+H +A A +D  +R+FTL+   +E    GG   F+    A+      +VWRV+WN  GTVLAS+G+DG VRLW+      W    + +    PV G   + ++
Sbjct:   24 LGRSFHILAVATKD--VRIFTLKPLRKELTSSGGLTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSGDDGCVRLWKANYMDNWKCTGILKGNGSPVNGSSQQGIF 128          
BLAST of EWM22983.1 vs. NCBI_GenBank
Match: gi|585721314|ref|XP_006902817.1| (PREDICTED: nucleoporin SEH1-like [Elephantulus edwardii])

HSP 1 Score: 73.1738 bits (178), Expect = 8.660e-14
Identity = 39/104 (37.50%), Postives = 57/104 (54.81%), Query Frame = 0
Query:    1 MGRSYHSIACAGRDNRLRVFTLRRAGEEAGGRGGDWGFDPSRDAEEVEVGVEVWRVAWNALGTVLASTGEDGAVRLWQKGQGGRWT---LGRAMARPVRGQGDE 101
            +GRS+H +A A +D  +R+FTL+   +E    GG   F+    A+      +VWRV+WN  GTVLAS+G+DG VRLW+      W    + +    PV G   +
Sbjct:   60 LGRSFHILAVATKD--VRIFTLKPIRKELSSSGGPTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSGDDGCVRLWKANYMDNWKCTGILKGNGSPVSGNSQQ 161          
BLAST of EWM22983.1 vs. NCBI_GenBank
Match: gi|1032927739|ref|XP_016820264.1| (PREDICTED: nucleoporin SEH1-like isoform X2, partial [Cricetulus griseus])

HSP 1 Score: 73.1738 bits (178), Expect = 9.300e-14
Identity = 36/85 (42.35%), Postives = 52/85 (61.18%), Query Frame = 0
Query:    1 MGRSYHSIACAGRDNRLRVFTLRRAGEEAGGRGGDWGFDPSRDAEEVEVGVEVWRVAWNALGTVLASTGEDGAVRLWQKGQGGRW 85
            +GRS+H +A A +D  +R+FTL+   +E    GG   F+    A+  +   +VWRV+WN  GTVLAS+G+DG VRLW+      W
Sbjct:   98 LGRSFHILAIATKD--VRIFTLKPVSKELTSSGGHRKFEIHILAQFDDHNSQVWRVSWNITGTVLASSGDDGCVRLWKAIYMDNW 180          
BLAST of EWM22983.1 vs. NCBI_GenBank
Match: gi|953861345|ref|XP_014583212.1| (PREDICTED: nucleoporin SEH1 isoform X2 [Equus caballus])

HSP 1 Score: 73.559 bits (179), Expect = 1.175e-13
Identity = 39/104 (37.50%), Postives = 57/104 (54.81%), Query Frame = 0
Query:    1 MGRSYHSIACAGRDNRLRVFTLRRAGEEAGGRGGDWGFDPSRDAEEVEVGVEVWRVAWNALGTVLASTGEDGAVRLWQKGQGGRWT---LGRAMARPVRGQGDE 101
            +GRS+H +A A +D  +R+FTL+   +E    GG   F+    A+      +VWRV+WN  GTVLAS+G+DG VRLW+      W    + +    PV G   +
Sbjct:  106 LGRSFHILAIATKD--VRIFTLKPVRKELSSSGGPTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSGDDGCVRLWKANYMDNWKCTGILKGNGSPVNGSSQQ 207          
BLAST of EWM22983.1 vs. NCBI_GenBank
Match: gi|586548386|ref|XP_006909275.1| (PREDICTED: nucleoporin SEH1 isoform X3 [Pteropus alecto] >gi|759181835|ref|XP_011379617.1| PREDICTED: nucleoporin SEH1 isoform X3 [Pteropus vampyrus])

HSP 1 Score: 74.3294 bits (181), Expect = 1.319e-13
Identity = 40/104 (38.46%), Postives = 57/104 (54.81%), Query Frame = 0
Query:    1 MGRSYHSIACAGRDNRLRVFTLRRAGEEAGGRGGDWGFDPSRDAEEVEVGVEVWRVAWNALGTVLASTGEDGAVRLWQKGQGGRWT---LGRAMARPVRGQGDE 101
            +GRSYH +A A +D  +R+FTL+   +E    GG   F+    A+      +VWRV+WN  GTVLAS+G+DG VRLW+      W    + +    PV G   +
Sbjct:  165 LGRSYHILAIATKD--VRIFTLKPVRKELTSSGGPTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSGDDGCVRLWKANYMDNWKCTGILKGNGSPVSGSSQQ 266          
BLAST of EWM22983.1 vs. NCBI_GenBank
Match: gi|344249131|gb|EGW05235.1| (Nucleoporin SEH1 [Cricetulus griseus])

HSP 1 Score: 72.0182 bits (175), Expect = 1.464e-13
Identity = 36/85 (42.35%), Postives = 51/85 (60.00%), Query Frame = 0
Query:    1 MGRSYHSIACAGRDNRLRVFTLRRAGEEAGGRGGDWGFDPSRDAEEVEVGVEVWRVAWNALGTVLASTGEDGAVRLWQKGQGGRW 85
            +GRS+H +A A +D  +R+FTL+   +E    GG   F+    A+      +VWRV+WN  GTVLAS+G+DG VRLW+      W
Sbjct:   74 LGRSFHILAIATKD--VRIFTLKPVRKELTSSGGPTKFEIHMVAQFDNHNSQVWRVSWNITGTVLASSGDDGCVRLWKAIYMDNW 156          
BLAST of EWM22983.1 vs. NCBI_GenBank
Match: gi|1121905116|ref|XP_019523802.1| (PREDICTED: nucleoporin SEH1 isoform X2 [Hipposideros armiger])

HSP 1 Score: 73.9442 bits (180), Expect = 1.587e-13
Identity = 40/104 (38.46%), Postives = 57/104 (54.81%), Query Frame = 0
Query:    1 MGRSYHSIACAGRDNRLRVFTLRRAGEEAGGRGGDWGFDPSRDAEEVEVGVEVWRVAWNALGTVLASTGEDGAVRLWQKGQGGRWT---LGRAMARPVRGQGDE 101
            +GRSYH +A A +D  +R+FTL+   +E    GG   F+    A+      +VWRV+WN  GTVLAS+G+DG VRLW+      W    + +    PV G   +
Sbjct:  165 LGRSYHILAIATKD--VRIFTLKPVRKELTSSGGPTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSGDDGCVRLWKANYMENWKCTGILKGNGSPVNGSSQQ 266          
BLAST of EWM22983.1 vs. NCBI_GenBank
Match: gi|1102212348|ref|XP_019022735.1| (WD40 repeat-like protein [Saitoella complicata NRRL Y-17804] >gi|813214031|dbj|GAO47372.1| hypothetical protein G7K_1580-t1 [Saitoella complicata NRRL Y-17804] >gi|1063228389|gb|ODQ51622.1| WD40 repeat-like protein [Saitoella complicata NRRL Y-17804])

HSP 1 Score: 74.3294 bits (181), Expect = 1.655e-13
Identity = 40/88 (45.45%), Postives = 52/88 (59.09%), Query Frame = 0
Query:    1 MGRSYHSIACAGRDNRLRVFTLRRAGEEAGGRGGD---WGFDPSRDAEEVEVGVEVWRVAWNALGTVLASTGEDGAVRLWQKGQGGRW 85
            +GRSYH IA A +D  +RVF L    E+   R  D   W  +   D ++   G EVWRV+WNA GTVL+S G+DG +RLW+    G W
Sbjct:  231 LGRSYHLIATACKDGHVRVFKLTETKEDLYARAEDEKRWVVECIADLDDH--GAEVWRVSWNATGTVLSSAGDDGRIRLWKASFTGEW 316          
The following BLAST results are available for this feature:
BLAST of EWM22983.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103727|gb|EWM22983.1|5.960e-70100.00uncharacterized protein Naga_102334g1 [Nannochloro... [more]
gi|1149728742|ref|XP_020140845.1|5.698e-1437.50nucleoporin SEH1-like, partial [Microcebus murinus... [more]
gi|699702974|ref|XP_009891614.1|7.852e-1436.45PREDICTED: nucleoporin SEH1, partial [Charadrius v... [more]
gi|585721314|ref|XP_006902817.1|8.660e-1437.50PREDICTED: nucleoporin SEH1-like [Elephantulus edw... [more]
gi|1032927739|ref|XP_016820264.1|9.300e-1442.35PREDICTED: nucleoporin SEH1-like isoform X2, parti... [more]
gi|953861345|ref|XP_014583212.1|1.175e-1337.50PREDICTED: nucleoporin SEH1 isoform X2 [Equus caba... [more]
gi|586548386|ref|XP_006909275.1|1.319e-1338.46PREDICTED: nucleoporin SEH1 isoform X3 [Pteropus a... [more]
gi|344249131|gb|EGW05235.1|1.464e-1342.35Nucleoporin SEH1 [Cricetulus griseus][more]
gi|1121905116|ref|XP_019523802.1|1.587e-1338.46PREDICTED: nucleoporin SEH1 isoform X2 [Hipposider... [more]
gi|1102212348|ref|XP_019022735.1|1.655e-1345.45WD40 repeat-like protein [Saitoella complicata NRR... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7711rna7711Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications