EWM22983.1, cds7690 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22983.1 vs. NCBI_GenBank
Match: gi|585103727|gb|EWM22983.1| (uncharacterized protein Naga_102334g1 [Nannochloropsis gaditana]) HSP 1 Score: 213.386 bits (542), Expect = 5.960e-70 Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0 Query: 1 MGRSYHSIACAGRDNRLRVFTLRRAGEEAGGRGGDWGFDPSRDAEEVEVGVEVWRVAWNALGTVLASTGEDGAVRLWQKGQGGRWTLGRAMARPVRGQGDETVWMERP 108 MGRSYHSIACAGRDNRLRVFTLRRAGEEAGGRGGDWGFDPSRDAEEVEVGVEVWRVAWNALGTVLASTGEDGAVRLWQKGQGGRWTLGRAMARPVRGQGDETVWMERP Sbjct: 1 MGRSYHSIACAGRDNRLRVFTLRRAGEEAGGRGGDWGFDPSRDAEEVEVGVEVWRVAWNALGTVLASTGEDGAVRLWQKGQGGRWTLGRAMARPVRGQGDETVWMERP 108
BLAST of EWM22983.1 vs. NCBI_GenBank
Match: gi|1149728742|ref|XP_020140845.1| (nucleoporin SEH1-like, partial [Microcebus murinus]) HSP 1 Score: 72.4034 bits (176), Expect = 5.698e-14 Identity = 39/104 (37.50%), Postives = 57/104 (54.81%), Query Frame = 0 Query: 1 MGRSYHSIACAGRDNRLRVFTLRRAGEEAGGRGGDWGFDPSRDAEEVEVGVEVWRVAWNALGTVLASTGEDGAVRLWQKGQGGRWT---LGRAMARPVRGQGDE 101 +GRS+H +A A +D +R+FTL+ +E GG F+ A+ +VWRV+WN GTVLAS+G+DG VRLW+ W + + PV G + Sbjct: 7 LGRSFHILAIATKD--VRIFTLKPVRKELTSSGGPTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSGDDGCVRLWKANYMDNWKCTGILKGNGSPVNGSSQQ 108
BLAST of EWM22983.1 vs. NCBI_GenBank
Match: gi|699702974|ref|XP_009891614.1| (PREDICTED: nucleoporin SEH1, partial [Charadrius vociferus]) HSP 1 Score: 72.4034 bits (176), Expect = 7.852e-14 Identity = 39/107 (36.45%), Postives = 59/107 (55.14%), Query Frame = 0 Query: 1 MGRSYHSIACAGRDNRLRVFTLRRAGEEAGGRGGDWGFDPSRDAEEVEVGVEVWRVAWNALGTVLASTGEDGAVRLWQKGQGGRWT---LGRAMARPVRGQGDETVW 104 +GRS+H +A A +D +R+FTL+ +E GG F+ A+ +VWRV+WN GTVLAS+G+DG VRLW+ W + + PV G + ++ Sbjct: 24 LGRSFHILAVATKD--VRIFTLKPLRKELTSSGGLTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSGDDGCVRLWKANYMDNWKCTGILKGNGSPVNGSSQQGIF 128
BLAST of EWM22983.1 vs. NCBI_GenBank
Match: gi|585721314|ref|XP_006902817.1| (PREDICTED: nucleoporin SEH1-like [Elephantulus edwardii]) HSP 1 Score: 73.1738 bits (178), Expect = 8.660e-14 Identity = 39/104 (37.50%), Postives = 57/104 (54.81%), Query Frame = 0 Query: 1 MGRSYHSIACAGRDNRLRVFTLRRAGEEAGGRGGDWGFDPSRDAEEVEVGVEVWRVAWNALGTVLASTGEDGAVRLWQKGQGGRWT---LGRAMARPVRGQGDE 101 +GRS+H +A A +D +R+FTL+ +E GG F+ A+ +VWRV+WN GTVLAS+G+DG VRLW+ W + + PV G + Sbjct: 60 LGRSFHILAVATKD--VRIFTLKPIRKELSSSGGPTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSGDDGCVRLWKANYMDNWKCTGILKGNGSPVSGNSQQ 161
BLAST of EWM22983.1 vs. NCBI_GenBank
Match: gi|1032927739|ref|XP_016820264.1| (PREDICTED: nucleoporin SEH1-like isoform X2, partial [Cricetulus griseus]) HSP 1 Score: 73.1738 bits (178), Expect = 9.300e-14 Identity = 36/85 (42.35%), Postives = 52/85 (61.18%), Query Frame = 0 Query: 1 MGRSYHSIACAGRDNRLRVFTLRRAGEEAGGRGGDWGFDPSRDAEEVEVGVEVWRVAWNALGTVLASTGEDGAVRLWQKGQGGRW 85 +GRS+H +A A +D +R+FTL+ +E GG F+ A+ + +VWRV+WN GTVLAS+G+DG VRLW+ W Sbjct: 98 LGRSFHILAIATKD--VRIFTLKPVSKELTSSGGHRKFEIHILAQFDDHNSQVWRVSWNITGTVLASSGDDGCVRLWKAIYMDNW 180
BLAST of EWM22983.1 vs. NCBI_GenBank
Match: gi|953861345|ref|XP_014583212.1| (PREDICTED: nucleoporin SEH1 isoform X2 [Equus caballus]) HSP 1 Score: 73.559 bits (179), Expect = 1.175e-13 Identity = 39/104 (37.50%), Postives = 57/104 (54.81%), Query Frame = 0 Query: 1 MGRSYHSIACAGRDNRLRVFTLRRAGEEAGGRGGDWGFDPSRDAEEVEVGVEVWRVAWNALGTVLASTGEDGAVRLWQKGQGGRWT---LGRAMARPVRGQGDE 101 +GRS+H +A A +D +R+FTL+ +E GG F+ A+ +VWRV+WN GTVLAS+G+DG VRLW+ W + + PV G + Sbjct: 106 LGRSFHILAIATKD--VRIFTLKPVRKELSSSGGPTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSGDDGCVRLWKANYMDNWKCTGILKGNGSPVNGSSQQ 207
BLAST of EWM22983.1 vs. NCBI_GenBank
Match: gi|586548386|ref|XP_006909275.1| (PREDICTED: nucleoporin SEH1 isoform X3 [Pteropus alecto] >gi|759181835|ref|XP_011379617.1| PREDICTED: nucleoporin SEH1 isoform X3 [Pteropus vampyrus]) HSP 1 Score: 74.3294 bits (181), Expect = 1.319e-13 Identity = 40/104 (38.46%), Postives = 57/104 (54.81%), Query Frame = 0 Query: 1 MGRSYHSIACAGRDNRLRVFTLRRAGEEAGGRGGDWGFDPSRDAEEVEVGVEVWRVAWNALGTVLASTGEDGAVRLWQKGQGGRWT---LGRAMARPVRGQGDE 101 +GRSYH +A A +D +R+FTL+ +E GG F+ A+ +VWRV+WN GTVLAS+G+DG VRLW+ W + + PV G + Sbjct: 165 LGRSYHILAIATKD--VRIFTLKPVRKELTSSGGPTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSGDDGCVRLWKANYMDNWKCTGILKGNGSPVSGSSQQ 266
BLAST of EWM22983.1 vs. NCBI_GenBank
Match: gi|344249131|gb|EGW05235.1| (Nucleoporin SEH1 [Cricetulus griseus]) HSP 1 Score: 72.0182 bits (175), Expect = 1.464e-13 Identity = 36/85 (42.35%), Postives = 51/85 (60.00%), Query Frame = 0 Query: 1 MGRSYHSIACAGRDNRLRVFTLRRAGEEAGGRGGDWGFDPSRDAEEVEVGVEVWRVAWNALGTVLASTGEDGAVRLWQKGQGGRW 85 +GRS+H +A A +D +R+FTL+ +E GG F+ A+ +VWRV+WN GTVLAS+G+DG VRLW+ W Sbjct: 74 LGRSFHILAIATKD--VRIFTLKPVRKELTSSGGPTKFEIHMVAQFDNHNSQVWRVSWNITGTVLASSGDDGCVRLWKAIYMDNW 156
BLAST of EWM22983.1 vs. NCBI_GenBank
Match: gi|1121905116|ref|XP_019523802.1| (PREDICTED: nucleoporin SEH1 isoform X2 [Hipposideros armiger]) HSP 1 Score: 73.9442 bits (180), Expect = 1.587e-13 Identity = 40/104 (38.46%), Postives = 57/104 (54.81%), Query Frame = 0 Query: 1 MGRSYHSIACAGRDNRLRVFTLRRAGEEAGGRGGDWGFDPSRDAEEVEVGVEVWRVAWNALGTVLASTGEDGAVRLWQKGQGGRWT---LGRAMARPVRGQGDE 101 +GRSYH +A A +D +R+FTL+ +E GG F+ A+ +VWRV+WN GTVLAS+G+DG VRLW+ W + + PV G + Sbjct: 165 LGRSYHILAIATKD--VRIFTLKPVRKELTSSGGPTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSGDDGCVRLWKANYMENWKCTGILKGNGSPVNGSSQQ 266
BLAST of EWM22983.1 vs. NCBI_GenBank
Match: gi|1102212348|ref|XP_019022735.1| (WD40 repeat-like protein [Saitoella complicata NRRL Y-17804] >gi|813214031|dbj|GAO47372.1| hypothetical protein G7K_1580-t1 [Saitoella complicata NRRL Y-17804] >gi|1063228389|gb|ODQ51622.1| WD40 repeat-like protein [Saitoella complicata NRRL Y-17804]) HSP 1 Score: 74.3294 bits (181), Expect = 1.655e-13 Identity = 40/88 (45.45%), Postives = 52/88 (59.09%), Query Frame = 0 Query: 1 MGRSYHSIACAGRDNRLRVFTLRRAGEEAGGRGGD---WGFDPSRDAEEVEVGVEVWRVAWNALGTVLASTGEDGAVRLWQKGQGGRW 85 +GRSYH IA A +D +RVF L E+ R D W + D ++ G EVWRV+WNA GTVL+S G+DG +RLW+ G W Sbjct: 231 LGRSYHLIATACKDGHVRVFKLTETKEDLYARAEDEKRWVVECIADLDDH--GAEVWRVSWNATGTVLSSAGDDGRIRLWKASFTGEW 316 The following BLAST results are available for this feature:
BLAST of EWM22983.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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