rna7710, rna7710 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7710
Unique Name	rna7710
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1818
Alignment location	CM002473.1:144702..146792 +

Link to JBrowse

Properties


Property Name	Value
Product	nucleoporin seh1
Orig transcript id	gnl\|cribi\|Naga_101101g1.4445.mrna
Orig protein id	gnl\|cribi\|Naga_101101g1.4445
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002473.1	supercontig	CM002473.1:144702..146792 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101101g1	gene7464	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7710	rna7710-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22985.1	cds7689	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002473.1:144702..146792+
coding sequence from alignment at CM002473.1:144702..146792+

mRNA sequence

>rna7710 ID=rna7710|Name=rna7710|organism=Nannochloropsis gaditana|type=mRNA|length=1818bp
CGTCCCCCACTTCAACACTTTCGCTTCCATATTTCATTTAGCAACTAGAA
ATATTTACCCATAATACCCCAATACAATGGATTGATGGATAGGATTCGGT
TTCGTGGAGCAGATCGCAGGTGTGGTGGGCATTTGTGCTGTTCTCAGAGG
GGGGGCAAGAGCTGCTGAGAAAATGAACGTCAAGGTCCTGCGTGCGCTTG
CAGGAGGGGCTGCTTTGCCATCGGGTGATACTGGAGGAGATTCAAGACTC
CATTATCTAGGTTGGTCGGGATACTGCGTGCCATCTCGGGAGGAACAGGC
CCTGAGAGCGGCCGAAATGTTCATCAAAGCCGCCAAAAGCGTCATCGATC
CGCAGCACAACTCGCAACTTCCTCACTTACGCAGAACACAGGACGATAAC
GGTGTTTTGAAAGGACCGACGCCATTTCGATGTAAGAGGTAGAAGGTAGA
GACATTTCCGGCCTTTTTCCCTCCGAATGAGCGTAACTCTGTCCCTGTGG
CACGTGAAGCGAGTCTTAAAAGTGAATAACCTCCCCCCCCCGTGACGGGC
GCCCGGGTGAAAAAAAGCATGATACATTTCAAAGGGCCTTCTGTTTTTCT
ATTGGTCTATATTCGCACTTTGACGGAACCCAGAATATTGGCAAGAGAGA
TGGCAGTGAGGTAATCAACGCACTCCCGGGTGTAGCAACTGCACAACTTC
CACATCTGAAGCACCAAAAGGGCGTTGGTTTCTTGGCTATCCATGGTCCA
GCTCTTTCAAGCAACAAAAATGCTTGGCGGGTTCTTGAGCATCTTGCCAG
CCTCCGGGCCCAAACGTGTGCTGAACGACCCCAACACCTTCCCGCCAGCC
CTCGTCCCGTCTTCCTCCTTTGCCTCCTTTCCCCCTTCACCCCCCACTTC
CTCCACCAACAACGTCTCCCTCCTTATCCAAGATCTCCGCCGTCGCTCTC
GCAGCATGCAGGGCGCCTTCCTCTCCCCCAACGGGAAGCACGTCGATTAC
CCATCTCTCTTGACCAGCGAGGCATTTGCATCGTATTTGCAGATGACCAC
GCATCTGGCTACTCTCACAGGCGTGGGCGCTCTGTCCCCGGATGAGCGGA
AAGCCACCTTCCTAAACCTGTACAACTGCCTCGTCATTCATGCCCTCACC
CTCGACTCCGCCCGCCCTCCCTCCTCCTCGTCCTGGAGCCGCACTTCGTT
CTACGCCCGGACCTGCTACTGTGTAGGCGGGCACATACTCAGCCTGGACG
ACCTGGAGAACGGCTTATTGCGGGGCAACCGTCGAAGCCCCAACCCGTTG
GCTCGCCCTTCCATTTTTTCCGCGAAGCACTTCCCGAACCTCCCTATCTT
GCCTCCACTCTCCTCTTTCCCCTCCTCCTCCACCTTCCCCCCGACCAATG
CCCCGACAGACGCCCCCGACGCGCCTTCCTACCCCCCCGCCAGCCCCTCC
TCGCCCGAATCTCTTGCCGACTGGATCGTGCCCTTGGATGCACGCATCCA
TTTCGCCCTCAACTGCGGCGCGAATTCCTGCCCTGCCATCCGATATTACG
AGGCCGGGGGAGAGGGAGGGCGGGAGGGAGGGAAGGAAGGAGGGCGCCCG
GCAGGGATCCTCGAGACGATGCAAGGAGGGGGGAAGGGCGGGGAGGGGGG
AGGGAAATTAGAGCAACAATTGGAGGCGGCGGCGCGCGCCTTTTTTTGCG
GGTACGCGGGTGGTGGAGGAGGGAGGGAGGGAGGGAGGGAGGGGGAGAGG
AAAGTTGGTGGTGTACTTGAACAAGATATGTGCCTGGTACCGGAGTGATT
TCGCAGAGGGGGAGGAGG

protein sequence of rna7710

>rna7710-protein ID=rna7710-protein|Name=rna7710|organism=Nannochloropsis gaditana|type=polypeptide|length=269bp
MDSGHDYYVLDAQYDFYGRRFATCSSDHSIRIWDQVRLCLPSFPPSPLPS
LPPSLPPSPSLPLLPYLPHFILSFNPVCPSSLLPRPLLSSQVPRFCPPVP
PLLLRFSCPPPPLPSLPPQAPDGTWNPSAQILKASRSALSRLSWASPEYG
TLLAVASEDSTVSIWEEQANPSSPSAPSSPSAPSSTSSWVCRATLKESLR
AVTAVAFAPPCWGLRLATAATDGVVRVYEAVDVMNLALWSLQETFEGGRE
EGRLMVLSWNPCRFDPPML

mRNA from alignment at CM002473.1:144702..146792+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7710 ID=rna7710|Name=rna7710|organism=Nannochloropsis gaditana|type=mRNA|length=2091bp|location=Sequence derived from alignment at CM002473.1:144702..146792+ (Nannochloropsis gaditana)
CAttcggagggaaaaaggccggAAATGTCTCTACCTTCTACCTCTTACAT
CGAAATGGCGTCGGTCCTTTCAAAACACCGTTATCGTCCTGTGTTCTGCG
TAAGTGAGGAAGTTGCGAGTTGTGCTGCGGATCGATGACGCTTTTGGCGG
CTTTGATGAACATTTCGGCCGCTCTCAGGGCCTGTTCCTCCCGAGATGGC
ACGCAGTATCCCGACCAACCTAGATAATGGAGTCTTGAATCTCCTCCAGT
ATCACCCGATGGCAAAGCAGCCCCTCCTGCAAGCGCACGCAGGACCTTGA
CGTTCATTTTCTCAGCAgctcttgccccccctctgAGAACAGCACAAATG
CCCACCACACCTGCGATCTGCTCCACGAAACCGAATCCTATCCATCAATC
CATTGTATTGGGGTATTATGGGTAAATATTTCTAGTTGCTAAATGAAATA
TGGAAGCGAAAGTGTTGAAGTGGGGGACGAGAatgggcaaggagaagaaa
tttgaagcaaaaaaaatatttCCCTCGAATATTTCCTACATCCTGAGGGA
ATATTCTGTGCCATGGTAAGACCGACCATTTTTTGGGAGGGGTATAATCA
ATTTATGTCAGAGAAAGAATTTTAGAAGCCAAACATTGTGCATTTTTGGG
GGAGGTATAGTAAGGCGGGAGCCTAGTTAAGATTGTGTACCTTTCCTTGT
CTGTACAGAAACCAGTTCATTGTTAGGAAATGCTTCGGGACCACCAACCA
AAAGAGCAAAAAAGgtcgaaaagaagagaaggaggcatcCATGATAAGAG
TATGTATTGATTTTTAGTACAGAGATCAGGGAGGACGTCAAAACGTACCC
GGATActttccctccgcttccagcgCCTGAAAGCAACCGCTGGCCCCACC
TTGGCGTACTTTAAAGCACCTTTCGTTCAGGCAGCGAAAGATATTTCCAG
GTATATTTCCCTCATGGACGTGCTGTAGGGTCTTCCAACTAAAGAATGCA
TTGTCTTGGCGGTTGAAGTTCCTCCCATCTTTCATCTATCACGGAGCAAG
CTGTGGCAGGGTTTAACATAGCATAAATCTCGTACTTATTAACCACATGG
CAACCCTCCCACATAGACCAAAGAAAGAGGATTGTGAAGCAAACTTCGAA
TTCAGCATTTGAATCTTGTGCCGCGCAAGTTTGTGGGGAGACAATCCCAG
CAGCATAACCTCCTCTACCACCCACAACTGATGTGAAAGTACTTCAATTT
CACTTGACGATCGACAATTGGGGACACATCAACATGGATTCTGGGCATGA
TTACTACGTCCTGGACGCACAGTATGATTTTTATGGGCGGCGCTTCGCGA
CGTGCTCCTCCGACCATTCCATTCGGATCTGGGACCAGGTGCGactctgc
cttccctccttccctccctccccccttccctccctccctccctctctccc
tccttccccctctctccccctcctcccttacctTCCCCACTTTATTCTCT
CTTTCAACCCTGTTTGTCCGagttcccttctcccccgacCCCTTCTTTCA
TCCCAGGTTCCTCGCTTCTgtcctcctgtccctcccctgcttctaCGCTT
TTcatgccccccgcccccccttccctccctccctccgcaggCCCCCGACG
GAACATGGAACCCGTCCGCCCAGATCCTAAAAGCGAGTCgctccgccctt
tcccgtcTCTCTTGGGCTAGCCCCGAGTACGGCACGTTGCTCGCCGTTGC
CTCCGAGGACTCGACCGTCTCCATCTGGGAGGAGCAAGCCaacccgtcct
cgccctccgccccgtcctcgccctccgccccgtcctcgacctcgtcctGG
GTCTGTCGGGCCACCCTCAAAGAGAGCTTGCGAGCGGTGACGGCCGTCGC
CTTCGCGCCTCCGTGTTGGGGGTTGCGACTCGCCACAGCGGCCACGGACG
GCGTGGTCCGGGTCtacgaggcggtggacgtgATGAACCTGGCGCTGTGG
TCGCTCCAAGAGACCTTtgaaggcgggcgggaggagggacggctCATGGT
CCTTAGCTGGAACCCCTGTCGCTTTGATCCGCCCATGCTGG

Coding sequence (CDS) from alignment at CM002473.1:144702..146792+

>rna7710 ID=rna7710|Name=rna7710|organism=Nannochloropsis gaditana|type=CDS|length=808bp|location=Sequence derived from alignment at CM002473.1:144702..146792+ (Nannochloropsis gaditana)
ATGGATTCTGGGCATGATTACTACGTCCTGGACGCACAGTATGATTTTTA
TGGGCGGCGCTTCGCGACGTGCTCCTCCGACCATTCCATTCGGATCTGGG
ACCAGGTGCGactctgccttccctccttccctccctccccccttccctcc
ctccctccctctctccctccttccccctctctccccctcctcccttacct
TCCCCACTTTATTCTCTCTTTCAACCCTGTTTGTCCGagttcccttctcc
cccgacCCCTTCTTTCATCCCAGGTTCCTCGCTTCTgtcctcctgtccct
cccctgcttctaCGCTTTTcatgccccccgcccccccttccctccctccc
tccgcaggCCCCCGACGGAACATGGAACCCGTCCGCCCAGATCCTAAAAG
CGAGTCgctccgccctttcccgtcTCTCTTGGGCTAGCCCCGAGTACGGC
ACGTTGCTCGCCGTTGCCTCCGAGGACTCGACCGTCTCCATCTGGGAGGA
GCAAGCCaacccgtcctcgccctccgccccgtcctcgccctccgccccgt
cctcgacctcgtcctGGGTCTGTCGGGCCACCCTCAAAGAGAGCTTGCGA
GCGGTGACGGCCGTCGCCTTCGCGCCTCCGTGTTGGGGGTTGCGACTCGC
CACAGCGGCCACGGACGGCGTGGTCCGGGTCtacgaggcggtggacgtgA
TGAACCTGGCGCTGTGGTCGCTCCAAGAGACCTTtgaaggcgggcgggag
gagggacggctCATGGTCCTTAGCTGGAACCCCTGTCGCTTTGATCCGCC
CATGCTGG

Synonyms

Publications