EWM22985.1, cds7689 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM22985.1 vs. NCBI_GenBank
Match: gi|585103730|gb|EWM22985.1| (nucleoporin seh1, partial [Nannochloropsis gaditana]) HSP 1 Score: 525.783 bits (1353), Expect = 0.000e+0 Identity = 269/269 (100.00%), Postives = 269/269 (100.00%), Query Frame = 0
Query: 1 MDSGHDYYVLDAQYDFYGRRFATCSSDHSIRIWDQVRLCLPSFPPSPLPSLPPSLPPSPSLPLLPYLPHFILSFNPVCPSSLLPRPLLSSQVPRFCPPVPPLLLRFSCPPPPLPSLPPQAPDGTWNPSAQILKASRSALSRLSWASPEYGTLLAVASEDSTVSIWEEQANPSSPSAPSSPSAPSSTSSWVCRATLKESLRAVTAVAFAPPCWGLRLATAATDGVVRVYEAVDVMNLALWSLQETFEGGREEGRLMVLSWNPCRFDPPML 269
MDSGHDYYVLDAQYDFYGRRFATCSSDHSIRIWDQVRLCLPSFPPSPLPSLPPSLPPSPSLPLLPYLPHFILSFNPVCPSSLLPRPLLSSQVPRFCPPVPPLLLRFSCPPPPLPSLPPQAPDGTWNPSAQILKASRSALSRLSWASPEYGTLLAVASEDSTVSIWEEQANPSSPSAPSSPSAPSSTSSWVCRATLKESLRAVTAVAFAPPCWGLRLATAATDGVVRVYEAVDVMNLALWSLQETFEGGREEGRLMVLSWNPCRFDPPML
Sbjct: 1 MDSGHDYYVLDAQYDFYGRRFATCSSDHSIRIWDQVRLCLPSFPPSPLPSLPPSLPPSPSLPLLPYLPHFILSFNPVCPSSLLPRPLLSSQVPRFCPPVPPLLLRFSCPPPPLPSLPPQAPDGTWNPSAQILKASRSALSRLSWASPEYGTLLAVASEDSTVSIWEEQANPSSPSAPSSPSAPSSTSSWVCRATLKESLRAVTAVAFAPPCWGLRLATAATDGVVRVYEAVDVMNLALWSLQETFEGGREEGRLMVLSWNPCRFDPPML 269
BLAST of EWM22985.1 vs. NCBI_GenBank
Match: gi|219115900|ref|XP_002178745.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409512|gb|EEC49443.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 130.954 bits (328), Expect = 1.386e-32 Identity = 72/166 (43.37%), Postives = 96/166 (57.83%), Query Frame = 0
Query: 107 SCPPPPLPSLPPQAPDGTWNPSAQILKASRSALSRLSWASPEYGTLLAVASEDSTVSIWEE-QANPSSPSAPSSPSAPSSTSSWVCRATLKESLRAVTAVAFAPPCWGLRLATAATDGVVRVYEAVDVMNLALWSLQETFEGGREEGRL--MVLSWNPCRFDPPML 269
+C + +GTW+ +AQ +A R A++ +SWA PE+G+LLA D IWEE A ++ +A S +A S S W RA L E+ R+VT V FAP WGL+LA + DG VR+YEAVDVMNL+ W L T + E L LSW+ RF+PP L
Sbjct: 25 TCAGDRFVRVWDLTDEGTWSLAAQ-WQAHRGAVTSISWAHPEFGSLLATCGSDHDAKIWEERHATHNAATANGSTTAASLASRWTIRAALTEARRSVTCVEFAPRHWGLKLAVGSADGCVRIYEAVDVMNLSQWPLAATLQSFAEGNHLGCTCLSWSTGRFEPPTL 189
BLAST of EWM22985.1 vs. NCBI_GenBank
Match: gi|754347431|ref|XP_004347983.2| (nucleoporin Seh1 [Capsaspora owczarzaki ATCC 30864] >gi|765552736|gb|KJE93357.1| nucleoporin Seh1 [Capsaspora owczarzaki ATCC 30864]) HSP 1 Score: 118.627 bits (296), Expect = 6.885e-28 Identity = 64/163 (39.26%), Postives = 91/163 (55.83%), Query Frame = 0
Query: 107 SCPPPPLPSLPPQAPDGTWNPSAQILKASRSALSRLSWASPEYGTLLAVASEDSTVSIWEEQANPSSPSAPSSPSAPSSTSSWVCRATLKESLRAVTAVAFAPPCWGLRLATAATDGVVRVYEAVDVMNLALWSLQETFEGGREEGRLMVLSWNPCRFDPPML 269
+C + DG+WN + I KA +++ +++WA PEYG ++A S D TV+I+EEQ S S+W+ +A L +S V + FAP GL+LAT + DG VR+YEA DVMNL W L E FE R+EG +SWNP ++ PM+
Sbjct: 30 TCSSDHRVKIWDLGDDGSWNCTYTINKAHNASVWKVAWAHPEYGQVVASCSFDRTVNIYEEQVEEDSKKQ----------STWLRKAMLVDSRDTVRDIKFAPKHAGLKLATCSADGYVRIYEANDVMNLTFWPLMEEFE-ARKEG-CNCISWNPSKYHSPMI 180
BLAST of EWM22985.1 vs. NCBI_GenBank
Match: gi|1210525800|dbj|GAX15406.1| (nucleoporin SEH1 [Fistulifera solaris]) HSP 1 Score: 114.39 bits (285), Expect = 2.822e-26 Identity = 64/166 (38.55%), Postives = 91/166 (54.82%), Query Frame = 0
Query: 107 SCPPPPLPSLPPQAPDGTWNPSAQILKASRSALSRLSWASPEYGTLLAVASEDSTVSIWEEQANPSSPSAPSSPSAPSSTSSWVCRATLKESLRAVTAVAFAPPCWGLRLATAATDGVVRVYEAVDVMNLALWSLQ---ETFEGGREEGRLMVLSWNPCRFDPPML 269
+C + G W +AQ +A R +++ L WA PE+G++LA D IWEE+++ ++ A S W RA+L E+ R VT + FAP WGL+LA + DG VR+YEAVD+MNL+ W L ++FE G + G LSW RF+PP L
Sbjct: 40 TCSGDRFVRIWDLTDSGEWTLAAQ-WQAHRGSVTSLCWAHPEFGSILATCGSDHDAKIWEERSHTTNTMA----------SRWTLRASLTEARRGVTCLEFAPRHWGLKLAVGSADGCVRIYEAVDIMNLSQWPLAAALQSFEEGSKLG-CTCLSWCNGRFEPPTL 193
BLAST of EWM22985.1 vs. NCBI_GenBank
Match: gi|66818211|ref|XP_642765.1| (hypothetical protein DDB_G0277257 [Dictyostelium discoideum AX4] >gi|60470842|gb|EAL68814.1| hypothetical protein DDB_G0277257 [Dictyostelium discoideum AX4]) HSP 1 Score: 115.546 bits (288), Expect = 7.016e-26 Identity = 60/163 (36.81%), Postives = 90/163 (55.21%), Query Frame = 0
Query: 107 SCPPPPLPSLPPQAPDGTWNPSAQILKASRSALSRLSWASPEYGTLLAVASEDSTVSIWEEQANPSSPSAPSSPSAPSSTSSWVCRATLKESLRAVTAVAFAPPCWGLRLATAATDGVVRVYEAVDVMNLALWSLQETFEGGREEGRLMVLSWNPCRFDPPML 269
+C + Q + W SA+ KA ++ +L+WA PEYG ++A S D TV IWEE + W +A L +S +VT + FAP +GLRLAT ++DG +R+YEA+D+MNL+ W++ E FE ++G +SWNP +D PM+
Sbjct: 29 TCSSDQKIKVWDQNDNQKWELSAE-WKAHSGSVWKLAWAHPEYGQVIASCSFDRTVCIWEESEDEKGQKK------------WQLKAHLVDSRDSVTDIKFAPKSFGLRLATCSSDGYIRIYEAMDIMNLSQWTIVEEFE--SQKGTSNCISWNPSSYDKPMI 176
BLAST of EWM22985.1 vs. NCBI_GenBank
Match: gi|1210515347|dbj|GAX25799.1| (nucleoporin SEH1 [Fistulifera solaris]) HSP 1 Score: 113.235 bits (282), Expect = 9.727e-26 Identity = 63/166 (37.95%), Postives = 91/166 (54.82%), Query Frame = 0
Query: 107 SCPPPPLPSLPPQAPDGTWNPSAQILKASRSALSRLSWASPEYGTLLAVASEDSTVSIWEEQANPSSPSAPSSPSAPSSTSSWVCRATLKESLRAVTAVAFAPPCWGLRLATAATDGVVRVYEAVDVMNLALWSLQ---ETFEGGREEGRLMVLSWNPCRFDPPML 269
+C + G W +AQ +A R +++ + WA PE+G++LA D IWEE+++ ++ A S W RA+L E+ R VT + FAP WGL+LA + DG VR+YEAVD+MNL+ W L ++FE G + G LSW RF+PP L
Sbjct: 40 TCSGDRFVRVWDLTDSGEWTLAAQ-WQAHRGSVTSVCWAHPEFGSILATCGSDHDAKIWEERSHTTNTMA----------SRWTLRASLTEARRGVTCLEFAPRHWGLKLAVGSADGCVRIYEAVDIMNLSQWPLAAALQSFEEGSKLG-CTCLSWCNGRFEPPTL 193
BLAST of EWM22985.1 vs. NCBI_GenBank
Match: gi|831787841|ref|XP_012758560.1| (hypothetical protein SAMD00019534_011390, partial [Acytostelium subglobosum LB1] >gi|735859192|dbj|GAM17964.1| hypothetical protein SAMD00019534_011390, partial [Acytostelium subglobosum LB1]) HSP 1 Score: 113.235 bits (282), Expect = 1.266e-25 Identity = 63/164 (38.41%), Postives = 92/164 (56.10%), Query Frame = 0
Query: 107 SCPPPPLPSLPPQAPD-GTWNPSAQILKASRSALSRLSWASPEYGTLLAVASEDSTVSIWEEQANPSSPSAPSSPSAPSSTSSWVCRATLKESLRAVTAVAFAPPCWGLRLATAATDGVVRVYEAVDVMNLALWSLQETFEGGREEGRLMVLSWNPCRFDPPML 269
+C + +PD G W SA+ K+ ++ +++WA PEYG ++A S D TV IWEE + T W +ATL +S +VT + FAP +GLRLAT ++DG +R+YEA+D+MNL+ W L E FE ++G +SWNP FD M+
Sbjct: 30 TCSSDQKIKIWDLSPDTGKWTMSAE-WKSHSGSVWKVAWAHPEYGQVIASCSFDRTVCIWEEGEDEHQ------------TKRWQLKATLVDSRDSVTDIKFAPKAFGLRLATCSSDGYIRIYEALDIMNLSQWPLLEEFES--QKGASNCISWNPNSFDKQMI 178
BLAST of EWM22985.1 vs. NCBI_GenBank
Match: gi|908488714|ref|XP_013094588.1| (PREDICTED: LOW QUALITY PROTEIN: nucleoporin SEH1-like [Biomphalaria glabrata]) HSP 1 Score: 111.694 bits (278), Expect = 3.698e-25 Identity = 61/147 (41.50%), Postives = 86/147 (58.50%), Query Frame = 0
Query: 123 GTWNPSAQILKASRSALSRLSWASPEYGTLLAVASEDSTVSIWEEQANPSSPSAPSSPSAPSSTSSWVCRATLKESLRAVTAVAFAPPCWGLRLATAATDGVVRVYEAVDVMNLALWSLQETFEGGREEGRLMVLSWNPCRFDPPML 269
G W+ +A K ++ R++WA P++G +LA S D T ++WEE S SS+++W+ R +L +S +VT V FAP GL+LAT + DG+VR+YEAVDVMNL+ W LQ F +L LSWN R PPM+
Sbjct: 44 GEWHCTAS-WKTHSGSVWRVTWAHPDFGQVLATCSFDRTAAVWEE------LSGDVGTKGGSSSNTWIKRTSLVDSRTSVTDVGFAPKHLGLQLATCSEDGIVRIYEAVDVMNLSNWQLQYEFNCNF---KLSCLSWNTSRMHPPMI 180
BLAST of EWM22985.1 vs. NCBI_GenBank
Match: gi|953499819|emb|CEG38460.1| (Nuclear pore complex component (sc Seh1) [Plasmopara halstedii]) HSP 1 Score: 110.538 bits (275), Expect = 9.798e-25 Identity = 62/147 (42.18%), Postives = 88/147 (59.86%), Query Frame = 0
Query: 133 KASRSALSRLSWASPEYGTLLAVASEDSTVSIWEEQ-------ANPSSPSAPS---SPSAPSSTSSWVCRATLKESLRAVTAVAFAPPCWGLRLATAATDGVVRVYEAVDVMNLALWSLQETFEGGREEGRLMVLSWNPCRFDPPML 269
A ++++ ++ WA PE+G +LA S D TVSIWE+Q AN S +A + S ++ + W +A L ++ +V V FAP GLRLATA+ DG VR+YEA+DVMNL+ W LQE F ++ +SWN RFD PM+
Sbjct: 56 NAHQASVWKVEWAHPEFGQILASCSFDRTVSIWEDQGLYLNASANSSDSTAANGVASVTSAGNKEGWRNQAQLVDARDSVHDVKFAPRHLGLRLATASEDGFVRMYEAIDVMNLSHWPLQEEFLADKDG--TTCVSWNKSRFDVPMI 200
BLAST of EWM22985.1 vs. NCBI_GenBank
Match: gi|567974994|gb|ETL25568.1| (hypothetical protein L916_20602 [Phytophthora parasitica] >gi|568004460|gb|ETL78784.1| hypothetical protein L917_20462 [Phytophthora parasitica] >gi|570312529|gb|ETO60477.1| hypothetical protein F444_21338 [Phytophthora parasitica P1976]) HSP 1 Score: 110.153 bits (274), Expect = 1.350e-24 Identity = 62/147 (42.18%), Postives = 88/147 (59.86%), Query Frame = 0
Query: 133 KASRSALSRLSWASPEYGTLLAVASEDSTVSIWEEQANPSSPSAPSSPSAPSSTSS----------WVCRATLKESLRAVTAVAFAPPCWGLRLATAATDGVVRVYEAVDVMNLALWSLQETFEGGREEGRLMVLSWNPCRFDPPML 269
A ++++ ++ WA PE+G +LA S D TVSIWE+Q + SA SS +A ++ + W +A L ++ +V V FAP GLRLATA+ DG VR+YEA+DVMNL+ W LQE F ++ +SWN RFD PM+
Sbjct: 56 NAHQASVWKVEWAHPEFGQILASCSFDRTVSIWEDQGLYLNASASSSDTATANGGTPAASAGTKEGWRNQAQLVDARDSVHDVKFAPRHLGLRLATASEDGFVRMYEAIDVMNLSHWPLQEEFLADKDGA--TCVSWNKSRFDVPMI 200 The following BLAST results are available for this feature:
BLAST of EWM22985.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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