EWM22985.1, cds7689 (CDS) Nannochloropsis gaditana

Overview
NameEWM22985.1
Unique Namecds7689
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002473.1:145985..146792 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22985.1
Productnucleoporin seh1
Partialtrue
Orig transcript idgnl|cribi|Naga_101101g1.4445.mrna
GbkeyCDS
End range.
End range146792
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:145985..146792 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0007165signal transduction
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR017986WD40_repeat_dom
IPR015943WD40/YVTN_repeat-like_dom
IPR001680WD40_repeat
Homology
BLAST of EWM22985.1 vs. NCBI_GenBank
Match: gi|585103730|gb|EWM22985.1| (nucleoporin seh1, partial [Nannochloropsis gaditana])

HSP 1 Score: 525.783 bits (1353), Expect = 0.000e+0
Identity = 269/269 (100.00%), Postives = 269/269 (100.00%), Query Frame = 0
Query:    1 MDSGHDYYVLDAQYDFYGRRFATCSSDHSIRIWDQVRLCLPSFPPSPLPSLPPSLPPSPSLPLLPYLPHFILSFNPVCPSSLLPRPLLSSQVPRFCPPVPPLLLRFSCPPPPLPSLPPQAPDGTWNPSAQILKASRSALSRLSWASPEYGTLLAVASEDSTVSIWEEQANPSSPSAPSSPSAPSSTSSWVCRATLKESLRAVTAVAFAPPCWGLRLATAATDGVVRVYEAVDVMNLALWSLQETFEGGREEGRLMVLSWNPCRFDPPML 269
            MDSGHDYYVLDAQYDFYGRRFATCSSDHSIRIWDQVRLCLPSFPPSPLPSLPPSLPPSPSLPLLPYLPHFILSFNPVCPSSLLPRPLLSSQVPRFCPPVPPLLLRFSCPPPPLPSLPPQAPDGTWNPSAQILKASRSALSRLSWASPEYGTLLAVASEDSTVSIWEEQANPSSPSAPSSPSAPSSTSSWVCRATLKESLRAVTAVAFAPPCWGLRLATAATDGVVRVYEAVDVMNLALWSLQETFEGGREEGRLMVLSWNPCRFDPPML
Sbjct:    1 MDSGHDYYVLDAQYDFYGRRFATCSSDHSIRIWDQVRLCLPSFPPSPLPSLPPSLPPSPSLPLLPYLPHFILSFNPVCPSSLLPRPLLSSQVPRFCPPVPPLLLRFSCPPPPLPSLPPQAPDGTWNPSAQILKASRSALSRLSWASPEYGTLLAVASEDSTVSIWEEQANPSSPSAPSSPSAPSSTSSWVCRATLKESLRAVTAVAFAPPCWGLRLATAATDGVVRVYEAVDVMNLALWSLQETFEGGREEGRLMVLSWNPCRFDPPML 269          
BLAST of EWM22985.1 vs. NCBI_GenBank
Match: gi|219115900|ref|XP_002178745.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409512|gb|EEC49443.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 130.954 bits (328), Expect = 1.386e-32
Identity = 72/166 (43.37%), Postives = 96/166 (57.83%), Query Frame = 0
Query:  107 SCPPPPLPSLPPQAPDGTWNPSAQILKASRSALSRLSWASPEYGTLLAVASEDSTVSIWEE-QANPSSPSAPSSPSAPSSTSSWVCRATLKESLRAVTAVAFAPPCWGLRLATAATDGVVRVYEAVDVMNLALWSLQETFEGGREEGRL--MVLSWNPCRFDPPML 269
            +C       +     +GTW+ +AQ  +A R A++ +SWA PE+G+LLA    D    IWEE  A  ++ +A  S +A S  S W  RA L E+ R+VT V FAP  WGL+LA  + DG VR+YEAVDVMNL+ W L  T +   E   L    LSW+  RF+PP L
Sbjct:   25 TCAGDRFVRVWDLTDEGTWSLAAQ-WQAHRGAVTSISWAHPEFGSLLATCGSDHDAKIWEERHATHNAATANGSTTAASLASRWTIRAALTEARRSVTCVEFAPRHWGLKLAVGSADGCVRIYEAVDVMNLSQWPLAATLQSFAEGNHLGCTCLSWSTGRFEPPTL 189          
BLAST of EWM22985.1 vs. NCBI_GenBank
Match: gi|754347431|ref|XP_004347983.2| (nucleoporin Seh1 [Capsaspora owczarzaki ATCC 30864] >gi|765552736|gb|KJE93357.1| nucleoporin Seh1 [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 118.627 bits (296), Expect = 6.885e-28
Identity = 64/163 (39.26%), Postives = 91/163 (55.83%), Query Frame = 0
Query:  107 SCPPPPLPSLPPQAPDGTWNPSAQILKASRSALSRLSWASPEYGTLLAVASEDSTVSIWEEQANPSSPSAPSSPSAPSSTSSWVCRATLKESLRAVTAVAFAPPCWGLRLATAATDGVVRVYEAVDVMNLALWSLQETFEGGREEGRLMVLSWNPCRFDPPML 269
            +C       +     DG+WN +  I KA  +++ +++WA PEYG ++A  S D TV+I+EEQ    S             S+W+ +A L +S   V  + FAP   GL+LAT + DG VR+YEA DVMNL  W L E FE  R+EG    +SWNP ++  PM+
Sbjct:   30 TCSSDHRVKIWDLGDDGSWNCTYTINKAHNASVWKVAWAHPEYGQVVASCSFDRTVNIYEEQVEEDSKKQ----------STWLRKAMLVDSRDTVRDIKFAPKHAGLKLATCSADGYVRIYEANDVMNLTFWPLMEEFE-ARKEG-CNCISWNPSKYHSPMI 180          
BLAST of EWM22985.1 vs. NCBI_GenBank
Match: gi|1210525800|dbj|GAX15406.1| (nucleoporin SEH1 [Fistulifera solaris])

HSP 1 Score: 114.39 bits (285), Expect = 2.822e-26
Identity = 64/166 (38.55%), Postives = 91/166 (54.82%), Query Frame = 0
Query:  107 SCPPPPLPSLPPQAPDGTWNPSAQILKASRSALSRLSWASPEYGTLLAVASEDSTVSIWEEQANPSSPSAPSSPSAPSSTSSWVCRATLKESLRAVTAVAFAPPCWGLRLATAATDGVVRVYEAVDVMNLALWSLQ---ETFEGGREEGRLMVLSWNPCRFDPPML 269
            +C       +      G W  +AQ  +A R +++ L WA PE+G++LA    D    IWEE+++ ++  A          S W  RA+L E+ R VT + FAP  WGL+LA  + DG VR+YEAVD+MNL+ W L    ++FE G + G    LSW   RF+PP L
Sbjct:   40 TCSGDRFVRIWDLTDSGEWTLAAQ-WQAHRGSVTSLCWAHPEFGSILATCGSDHDAKIWEERSHTTNTMA----------SRWTLRASLTEARRGVTCLEFAPRHWGLKLAVGSADGCVRIYEAVDIMNLSQWPLAAALQSFEEGSKLG-CTCLSWCNGRFEPPTL 193          
BLAST of EWM22985.1 vs. NCBI_GenBank
Match: gi|66818211|ref|XP_642765.1| (hypothetical protein DDB_G0277257 [Dictyostelium discoideum AX4] >gi|60470842|gb|EAL68814.1| hypothetical protein DDB_G0277257 [Dictyostelium discoideum AX4])

HSP 1 Score: 115.546 bits (288), Expect = 7.016e-26
Identity = 60/163 (36.81%), Postives = 90/163 (55.21%), Query Frame = 0
Query:  107 SCPPPPLPSLPPQAPDGTWNPSAQILKASRSALSRLSWASPEYGTLLAVASEDSTVSIWEEQANPSSPSAPSSPSAPSSTSSWVCRATLKESLRAVTAVAFAPPCWGLRLATAATDGVVRVYEAVDVMNLALWSLQETFEGGREEGRLMVLSWNPCRFDPPML 269
            +C       +  Q  +  W  SA+  KA   ++ +L+WA PEYG ++A  S D TV IWEE  +                  W  +A L +S  +VT + FAP  +GLRLAT ++DG +R+YEA+D+MNL+ W++ E FE   ++G    +SWNP  +D PM+
Sbjct:   29 TCSSDQKIKVWDQNDNQKWELSAE-WKAHSGSVWKLAWAHPEYGQVIASCSFDRTVCIWEESEDEKGQKK------------WQLKAHLVDSRDSVTDIKFAPKSFGLRLATCSSDGYIRIYEAMDIMNLSQWTIVEEFE--SQKGTSNCISWNPSSYDKPMI 176          
BLAST of EWM22985.1 vs. NCBI_GenBank
Match: gi|1210515347|dbj|GAX25799.1| (nucleoporin SEH1 [Fistulifera solaris])

HSP 1 Score: 113.235 bits (282), Expect = 9.727e-26
Identity = 63/166 (37.95%), Postives = 91/166 (54.82%), Query Frame = 0
Query:  107 SCPPPPLPSLPPQAPDGTWNPSAQILKASRSALSRLSWASPEYGTLLAVASEDSTVSIWEEQANPSSPSAPSSPSAPSSTSSWVCRATLKESLRAVTAVAFAPPCWGLRLATAATDGVVRVYEAVDVMNLALWSLQ---ETFEGGREEGRLMVLSWNPCRFDPPML 269
            +C       +      G W  +AQ  +A R +++ + WA PE+G++LA    D    IWEE+++ ++  A          S W  RA+L E+ R VT + FAP  WGL+LA  + DG VR+YEAVD+MNL+ W L    ++FE G + G    LSW   RF+PP L
Sbjct:   40 TCSGDRFVRVWDLTDSGEWTLAAQ-WQAHRGSVTSVCWAHPEFGSILATCGSDHDAKIWEERSHTTNTMA----------SRWTLRASLTEARRGVTCLEFAPRHWGLKLAVGSADGCVRIYEAVDIMNLSQWPLAAALQSFEEGSKLG-CTCLSWCNGRFEPPTL 193          
BLAST of EWM22985.1 vs. NCBI_GenBank
Match: gi|831787841|ref|XP_012758560.1| (hypothetical protein SAMD00019534_011390, partial [Acytostelium subglobosum LB1] >gi|735859192|dbj|GAM17964.1| hypothetical protein SAMD00019534_011390, partial [Acytostelium subglobosum LB1])

HSP 1 Score: 113.235 bits (282), Expect = 1.266e-25
Identity = 63/164 (38.41%), Postives = 92/164 (56.10%), Query Frame = 0
Query:  107 SCPPPPLPSLPPQAPD-GTWNPSAQILKASRSALSRLSWASPEYGTLLAVASEDSTVSIWEEQANPSSPSAPSSPSAPSSTSSWVCRATLKESLRAVTAVAFAPPCWGLRLATAATDGVVRVYEAVDVMNLALWSLQETFEGGREEGRLMVLSWNPCRFDPPML 269
            +C       +   +PD G W  SA+  K+   ++ +++WA PEYG ++A  S D TV IWEE  +               T  W  +ATL +S  +VT + FAP  +GLRLAT ++DG +R+YEA+D+MNL+ W L E FE   ++G    +SWNP  FD  M+
Sbjct:   30 TCSSDQKIKIWDLSPDTGKWTMSAE-WKSHSGSVWKVAWAHPEYGQVIASCSFDRTVCIWEEGEDEHQ------------TKRWQLKATLVDSRDSVTDIKFAPKAFGLRLATCSSDGYIRIYEALDIMNLSQWPLLEEFES--QKGASNCISWNPNSFDKQMI 178          
BLAST of EWM22985.1 vs. NCBI_GenBank
Match: gi|908488714|ref|XP_013094588.1| (PREDICTED: LOW QUALITY PROTEIN: nucleoporin SEH1-like [Biomphalaria glabrata])

HSP 1 Score: 111.694 bits (278), Expect = 3.698e-25
Identity = 61/147 (41.50%), Postives = 86/147 (58.50%), Query Frame = 0
Query:  123 GTWNPSAQILKASRSALSRLSWASPEYGTLLAVASEDSTVSIWEEQANPSSPSAPSSPSAPSSTSSWVCRATLKESLRAVTAVAFAPPCWGLRLATAATDGVVRVYEAVDVMNLALWSLQETFEGGREEGRLMVLSWNPCRFDPPML 269
            G W+ +A   K    ++ R++WA P++G +LA  S D T ++WEE       S        SS+++W+ R +L +S  +VT V FAP   GL+LAT + DG+VR+YEAVDVMNL+ W LQ  F       +L  LSWN  R  PPM+
Sbjct:   44 GEWHCTAS-WKTHSGSVWRVTWAHPDFGQVLATCSFDRTAAVWEE------LSGDVGTKGGSSSNTWIKRTSLVDSRTSVTDVGFAPKHLGLQLATCSEDGIVRIYEAVDVMNLSNWQLQYEFNCNF---KLSCLSWNTSRMHPPMI 180          
BLAST of EWM22985.1 vs. NCBI_GenBank
Match: gi|953499819|emb|CEG38460.1| (Nuclear pore complex component (sc Seh1) [Plasmopara halstedii])

HSP 1 Score: 110.538 bits (275), Expect = 9.798e-25
Identity = 62/147 (42.18%), Postives = 88/147 (59.86%), Query Frame = 0
Query:  133 KASRSALSRLSWASPEYGTLLAVASEDSTVSIWEEQ-------ANPSSPSAPS---SPSAPSSTSSWVCRATLKESLRAVTAVAFAPPCWGLRLATAATDGVVRVYEAVDVMNLALWSLQETFEGGREEGRLMVLSWNPCRFDPPML 269
             A ++++ ++ WA PE+G +LA  S D TVSIWE+Q       AN S  +A +   S ++  +   W  +A L ++  +V  V FAP   GLRLATA+ DG VR+YEA+DVMNL+ W LQE F   ++      +SWN  RFD PM+
Sbjct:   56 NAHQASVWKVEWAHPEFGQILASCSFDRTVSIWEDQGLYLNASANSSDSTAANGVASVTSAGNKEGWRNQAQLVDARDSVHDVKFAPRHLGLRLATASEDGFVRMYEAIDVMNLSHWPLQEEFLADKDG--TTCVSWNKSRFDVPMI 200          
BLAST of EWM22985.1 vs. NCBI_GenBank
Match: gi|567974994|gb|ETL25568.1| (hypothetical protein L916_20602 [Phytophthora parasitica] >gi|568004460|gb|ETL78784.1| hypothetical protein L917_20462 [Phytophthora parasitica] >gi|570312529|gb|ETO60477.1| hypothetical protein F444_21338 [Phytophthora parasitica P1976])

HSP 1 Score: 110.153 bits (274), Expect = 1.350e-24
Identity = 62/147 (42.18%), Postives = 88/147 (59.86%), Query Frame = 0
Query:  133 KASRSALSRLSWASPEYGTLLAVASEDSTVSIWEEQANPSSPSAPSSPSAPSSTSS----------WVCRATLKESLRAVTAVAFAPPCWGLRLATAATDGVVRVYEAVDVMNLALWSLQETFEGGREEGRLMVLSWNPCRFDPPML 269
             A ++++ ++ WA PE+G +LA  S D TVSIWE+Q    + SA SS +A ++  +          W  +A L ++  +V  V FAP   GLRLATA+ DG VR+YEA+DVMNL+ W LQE F   ++      +SWN  RFD PM+
Sbjct:   56 NAHQASVWKVEWAHPEFGQILASCSFDRTVSIWEDQGLYLNASASSSDTATANGGTPAASAGTKEGWRNQAQLVDARDSVHDVKFAPRHLGLRLATASEDGFVRMYEAIDVMNLSHWPLQEEFLADKDGA--TCVSWNKSRFDVPMI 200          
The following BLAST results are available for this feature:
BLAST of EWM22985.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103730|gb|EWM22985.1|0.000e+0100.00nucleoporin seh1, partial [Nannochloropsis gaditan... [more]
gi|219115900|ref|XP_002178745.1|1.386e-3243.37predicted protein, partial [Phaeodactylum tricornu... [more]
gi|754347431|ref|XP_004347983.2|6.885e-2839.26nucleoporin Seh1 [Capsaspora owczarzaki ATCC 30864... [more]
gi|1210525800|dbj|GAX15406.1|2.822e-2638.55nucleoporin SEH1 [Fistulifera solaris][more]
gi|66818211|ref|XP_642765.1|7.016e-2636.81hypothetical protein DDB_G0277257 [Dictyostelium d... [more]
gi|1210515347|dbj|GAX25799.1|9.727e-2637.95nucleoporin SEH1 [Fistulifera solaris][more]
gi|831787841|ref|XP_012758560.1|1.266e-2538.41hypothetical protein SAMD00019534_011390, partial ... [more]
gi|908488714|ref|XP_013094588.1|3.698e-2541.50PREDICTED: LOW QUALITY PROTEIN: nucleoporin SEH1-l... [more]
gi|953499819|emb|CEG38460.1|9.798e-2542.18Nuclear pore complex component (sc Seh1) [Plasmopa... [more]
gi|567974994|gb|ETL25568.1|1.350e-2442.18hypothetical protein L916_20602 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7710rna7710Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications