rna7703, rna7703 (mRNA) Nannochloropsis gaditana

Overview
Namerna7703
Unique Namerna7703
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length344
Alignment locationCM002473.1:128766..130739 +

Link to JBrowse

Properties
Property NameValue
Producttranslation elongation factor
Orig transcript idgnl|cribi|Naga_101614g1.3625.mrna
Orig protein idgnl|cribi|Naga_101614g1.3625
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:128766..130739 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101614g1gene7457Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7703rna7703-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22991.1cds7682Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7703 ID=rna7703|Name=rna7703|organism=Nannochloropsis gaditana|type=mRNA|length=344bp
GAGCAGGAGGTTTGATGCCCCTCTCTCTCCTTTCCCGGTACGGACGTCAA
CGGGCCTCAGCATGTCATGGCTTGAACGCCCGCAATTTCTACACCAGCAG
TTCATGGCTGCTGCAACGGCAACATGCAACGAAACATAAACATTCAGTTC
TCCCGCAAACGTCTTTTTGGGTCCGGGGTTTGGCATCAGCGGCTTCGGAC
GAGATACCAGACCACATCGCCAAGCTCCGCAACATCGGGATCTCGGCCCA
CATTGACAGCGGGAAGACGACCTTGACGGAGCGCATTCTCTTCTACACGG
GCAGAATCCGGGAGATCCACGACGTGAAGGTGAGGGGGGGATGA
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protein sequence of rna7703

>rna7703-protein ID=rna7703-protein|Name=rna7703|organism=Nannochloropsis gaditana|type=polypeptide|length=189bp
MRVYQGTIKRGGWLYNMRNDKKVKVPRLVRMHSNELEEIDSISAGDVCAM
FGVDCSSMDSFTDGTVKYALTSMFVPAPVISLAVKPKQSAMFANFSKALQ
RFCKEDPTLQVAFNEKTKETVISGMGELHLEIYVERLKREYNVDCSVGNP
NVNYRETIRKKANFNYLHKKQSGGQAVRRAPGTRWKRGR
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mRNA from alignment at CM002473.1:128766..130739+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7703 ID=rna7703|Name=rna7703|organism=Nannochloropsis gaditana|type=mRNA|length=1974bp|location=Sequence derived from alignment at CM002473.1:128766..130739+ (Nannochloropsis gaditana)
ttctccattgAGGCAAAGCCCCGATCCTCCTGACCGtcattcttcctccc
ctccctccttccctccctcccttgctcccttgctccctccctttctccag
aCGAAGCCCGTGTCCCTGTCCCTTGCAAGGAGAATCTTCCCGCAGTTGCC
CTGGCATTTaaattggaggagggaaaattcGGGCAGTTGACGTACATGCG
AGTGTATCAAGGGACGATCAAGCGAGGTGGCTGGCTCTACAACATGCGGA
ACGACAAGAAAGTGAAAGTCCCGCGCCTGGTCCGGATGCATTCGAACGAg
gtagggttagggttagggttagatTTAGGGTTGGGGTTGGGGTTCGGAAT
AGGGTTGAGATTTGGGTGATGAATCTCGACGACGTTGTGCCCGTCTCGGA
TGGCGGTGGACTTCGTGGGAGAGAAGGTTGGGTGGTGCCTGTGGCTGGCA
CGCGAGGGAAgggtagagggagggtaggagggggcggagatggGGCAAGA
ATgggtggagagaggaaaaggaggaagaacgcaGCAGGCGTCGGAAAGCC
tcacgtggaggaagacggcatGGATGACGATGGACGCGGACATGCTCCTC
CAGGAcggtcacgccctccctccctccctccctccctccctccctccctt
cccacctccctccttcagctgGAAGAAATCGATAGCATCAGCGCCGGAGA
CGTGTGCGCCATGTTCGGGGTGGATTGTTCCTCGATGGATTCCTTCACGG
ACGGCACGGTCAAGTACGCGTTGACCAGCATGTTCGTGCCCGCGCCCGTC
ATCTCTTTGGCGGTGAAGCCCAAGCAGTCGGCCATGTTTGCCAATTTTTC
CAAGGTGATTTGGTCCCCTTCTCGCTTTCTTCGTGGAGGTTTTACGCAGA
CGTCTTTGCTTCTTTGTTCTTTTCCAACCCTGTCGTGGCCCCCCTTTCTC
ATGTCTACTCACGTTCTTAGTGTCTGTTgggaggtgggtggggaaagagc
TTCTGTTCtgtgccttcccctttcctttctcctcctcttccactcctTAC
GTCGCGTCTTCTCCATGACCGTCCCGGCCTCGTTttcttcgcgccatttc
tgGCATCGTCTCTTTGCTTCCTTGGCGCTTGACGTGTTTCAAGGATACTG
CCAGGCCGTTCTTCGTTTCTGTGCGTCCTGTTGGCCTTGCCATCCCCctc
tcacgccctccctccctccctctctccctccctcaggccctgCAACGCTT
CTGCAAGGAGGACCCCACCCTCCAAGTCGCGTTCAACGAGAAGACCAAAG
AGACCGTTATCAGCGGGATGGGCGAGCTCCACTTGGAGGTAAGAGGCCGC
TTTGAGGGctgcgtcttcctcgcgctGGGGCCCTCGCCTCCGGGATAGGC
TCCTGAGTTCACGTCGCGGCCCCCTCGCGGGCTTTGTGGCCGTCCTCGTT
TCCCTTCTCTTGGCGTCTGGATCCGCCGCTTTCCGTCCCCATCCTTGTCT
GATTCTTCCGCTCTTATGGGGGGAattgaggggaggggaagctcGTGTCA
TCCGTGTGCTTTCCGGAGGCGCATTTGTCATCGGATCTGATTGGCCTCtg
cttcgtccctccctccctccctcccaccctccctccctgccaccgTCAGA
TCTACGTGGAGCGTCTCAAGCGCGAGTACAACGTGGACTGCAGCGTCGGC
AACCCAAACGTAAATTACCGAGAAACAATCCGAAAAAAAGCGAACTTCAA
CTATCTCCACAAAAAGCAATCCGGAGGCCAGGGTCAGTACGCCCGGGTCG
TTGGCTACGTGGAgccgttggaggagggcgagggggaggacgggaaggag
ggcgggaaggagggcgggctgggCTTCGAGTTCGTGAACaaggtggtggg
gacgaACATCCCCCCCGAGTACATTCCCAGCTGTGAGAAGGGCGCCCGGG
ACGcgatggaaaaggggccGTTGA
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Coding sequence (CDS) from alignment at CM002473.1:128766..130739+

>rna7703 ID=rna7703|Name=rna7703|organism=Nannochloropsis gaditana|type=CDS|length=2850bp|location=Sequence derived from alignment at CM002473.1:128766..130739+ (Nannochloropsis gaditana)
ATGCGAGTGTATCAAGGGACGATCAAGCGAGGTGGCTGGCTCTACAACAT
GCGGAACGACAAGAAAGTGAAAGTCCCGCGCCTGGTCCGGATGCATTCGA
ACGAgctgGAAGAAATCGATAGCATCAGCGCCGGAGACGTGTGCGCCATG
TTCGGGGTGGATTGTTCCTCGATGGATTCCTTCACGGACGGCACGGTCAA
GTACGCGTTGACCAGCATGTTCGTGCCCGCGCCCGTCATCTCTTTGGCGG
TGAAGCCCAAGCAGTCGGCCATGTTTGCCAATTTTTCCAAGgccctgCAA
CGCTTCTGCAAGGAGGACCCCACCCTCCAAGTCGCGTTCAACGAGAAGAC
CAAAGAGACCGTTATCAGCGGGATGGGCGAGCTCCACTTGGAGATCTACG
TGGAGCGTCTCAAGCGCGAGTACAACGTGGACTGCAGCGTCGGCAACCCA
AACGTAAATTACCGAGAAACAATCCGAAAAAAAGCGAACTTCAACTATCT
CCACAAAAAGCAATCCGGAGGCCAGGCTGTGAGAAGGGCGCCCGGGACGc
gatggaaaaggggccGTTGAATGCGAGTGTATCAAGGGACGATCAAGCGA
GGTGGCTGGCTCTACAACATGCGGAACGACAAGAAAGTGAAAGTCCCGCG
CCTGGTCCGGATGCATTCGAACGAgctgGAAGAAATCGATAGCATCAGCG
CCGGAGACGTGTGCGCCATGTTCGGGGTGGATTGTTCCTCGATGGATTCC
TTCACGGACGGCACGGTCAAGTACGCGTTGACCAGCATGTTCGTGCCCGC
GCCCGTCATCTCTTTGGCGGTGAAGCCCAAGCAGTCGGCCATGTTTGCCA
ATTTTTCCAAGgccctgCAACGCTTCTGCAAGGAGGACCCCACCCTCCAA
GTCGCGTTCAACGAGAAGACCAAAGAGACCGTTATCAGCGGGATGGGCGA
GCTCCACTTGGAGATCTACGTGGAGCGTCTCAAGCGCGAGTACAACGTGG
ACTGCAGCGTCGGCAACCCAAACGTAAATTACCGAGAAACAATCCGAAAA
AAAGCGAACTTCAACTATCTCCACAAAAAGCAATCCGGAGGCCAGGCTGT
GAGAAGGGCGCCCGGGACGcgatggaaaaggggccGTTGAATGCGAGTGT
ATCAAGGGACGATCAAGCGAGGTGGCTGGCTCTACAACATGCGGAACGAC
AAGAAAGTGAAAGTCCCGCGCCTGGTCCGGATGCATTCGAACGAgctgGA
AGAAATCGATAGCATCAGCGCCGGAGACGTGTGCGCCATGTTCGGGGTGG
ATTGTTCCTCGATGGATTCCTTCACGGACGGCACGGTCAAGTACGCGTTG
ACCAGCATGTTCGTGCCCGCGCCCGTCATCTCTTTGGCGGTGAAGCCCAA
GCAGTCGGCCATGTTTGCCAATTTTTCCAAGgccctgCAACGCTTCTGCA
AGGAGGACCCCACCCTCCAAGTCGCGTTCAACGAGAAGACCAAAGAGACC
GTTATCAGCGGGATGGGCGAGCTCCACTTGGAGATCTACGTGGAGCGTCT
CAAGCGCGAGTACAACGTGGACTGCAGCGTCGGCAACCCAAACGTAAATT
ACCGAGAAACAATCCGAAAAAAAGCGAACTTCAACTATCTCCACAAAAAG
CAATCCGGAGGCCAGGCTGTGAGAAGGGCGCCCGGGACGcgatggaaaag
gggccGTTGAATGCGAGTGTATCAAGGGACGATCAAGCGAGGTGGCTGGC
TCTACAACATGCGGAACGACAAGAAAGTGAAAGTCCCGCGCCTGGTCCGG
ATGCATTCGAACGAgctgGAAGAAATCGATAGCATCAGCGCCGGAGACGT
GTGCGCCATGTTCGGGGTGGATTGTTCCTCGATGGATTCCTTCACGGACG
GCACGGTCAAGTACGCGTTGACCAGCATGTTCGTGCCCGCGCCCGTCATC
TCTTTGGCGGTGAAGCCCAAGCAGTCGGCCATGTTTGCCAATTTTTCCAA
GgccctgCAACGCTTCTGCAAGGAGGACCCCACCCTCCAAGTCGCGTTCA
ACGAGAAGACCAAAGAGACCGTTATCAGCGGGATGGGCGAGCTCCACTTG
GAGATCTACGTGGAGCGTCTCAAGCGCGAGTACAACGTGGACTGCAGCGT
CGGCAACCCAAACGTAAATTACCGAGAAACAATCCGAAAAAAAGCGAACT
TCAACTATCTCCACAAAAAGCAATCCGGAGGCCAGGCTGTGAGAAGGGCG
CCCGGGACGcgatggaaaaggggccGTTGAATGCGAGTGTATCAAGGGAC
GATCAAGCGAGGTGGCTGGCTCTACAACATGCGGAACGACAAGAAAGTGA
AAGTCCCGCGCCTGGTCCGGATGCATTCGAACGAgctgGAAGAAATCGAT
AGCATCAGCGCCGGAGACGTGTGCGCCATGTTCGGGGTGGATTGTTCCTC
GATGGATTCCTTCACGGACGGCACGGTCAAGTACGCGTTGACCAGCATGT
TCGTGCCCGCGCCCGTCATCTCTTTGGCGGTGAAGCCCAAGCAGTCGGCC
ATGTTTGCCAATTTTTCCAAGgccctgCAACGCTTCTGCAAGGAGGACCC
CACCCTCCAAGTCGCGTTCAACGAGAAGACCAAAGAGACCGTTATCAGCG
GGATGGGCGAGCTCCACTTGGAGATCTACGTGGAGCGTCTCAAGCGCGAG
TACAACGTGGACTGCAGCGTCGGCAACCCAAACGTAAATTACCGAGAAAC
AATCCGAAAAAAAGCGAACTTCAACTATCTCCACAAAAAGCAATCCGGAG
GCCAGGCTGTGAGAAGGGCGCCCGGGACGcgatggaaaaggggccGTTGA
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Synonyms
Publications