rna7702, rna7702 (mRNA) Nannochloropsis gaditana

Overview
Namerna7702
Unique Namerna7702
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1325
Alignment locationCM002473.1:127019..127614 +

Link to JBrowse

Properties
Property NameValue
Productmitochondrial elongation factor
Orig transcript idgnl|cribi|Naga_101469g1.3190.mrna
Orig protein idgnl|cribi|Naga_101469g1.3190
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:127019..127614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101469g1gene7456Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7702rna7702-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22993.1cds7681Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7702 ID=rna7702|Name=rna7702|organism=Nannochloropsis gaditana|type=mRNA|length=1325bp
CTCCCTCCCTCCCTTCCCCCCGCCCTCCGCCCCTTCCTCCCCCCTCCCTC
CTCGCCGTCCTCCTCTCCTCCCTCTGCAACCTCCTGGCCTTCCATGACCC
TGCCAAGCACGCTCTTCTTCAGGCCGCAGCGTCCTTCCCCTCCTTCTTCC
CGTCTCTTCTTCACCTCGCCCTCCGTCCCGCCCTCCCCCCTCCCTCGCCC
TCCCGCTCCTCTCCCTCCTCCGCTCCCTCTCCCTCCTCCCCGGCGGCCGC
CACCTCCTCCTCCTTCCCTCCCCCTCCTCCCCCTCCTTCCTTGCCTCCTC
CCTCACCTCCCTCCTTCCCTCCCTCCTCCTCACCCCGCCTCCCTCCCACC
GACGCCGACGTCCTTCGGAGCTCTCCGCGGAGGGCTGGATCCGAATCTTG
GGCCTCTTAAAGCTCCTGGTCAACATCACCTTAAGCGCGGAAGGACAGCA
GCTCCTCGTTCGGCACCTCCCTCCCGCCCTCGTCCCCTCCACCTTGGAAG
ATGTGATTTTGTTCGTCCGGGAGGGAGGGACGGAGGGCGGGGGGGAAGGC
GGGAGGGAGGGGGAGGTGGAGGAGCTGATGGCTCAGATATGCTATCTCCT
TCGCAACCTCTCTTTCCTACGCGGGCCCGGGGCGGGAGGGAAGGCGAGCG
TCTTGTCGTCTCCCCTCCTGCTAACGTTTCTGGTAACGGACGCGATGACG
CATTCAAAAATTCAAATCCGATTTCCAGCCACCGTCGCCCTTTGGTCCCT
TCTCCACCACAGTGAGAAATCTACCGCCATGCTCCTGCGAGGGCAGGTGC
TTTCCATCCCTTCCTCCCCCCTCCCTCCTCCTCGCCCTCCCCCCTCCCTG
CCTCCGCGTGTGGGAGTCGCTGGCGGCGGCCAAGCGGTTGTTAGCTCTGG
ACGAGAAAGAGGGCAAGGAAGGGCGTATGGAGGAAGAGGAGCTGATGCTC
AGGGGGCTGCAAAGGGCTTTAGAGAATGTGACGGCGCTGCTCTCCTCTTT
CTCGCTGCCGGCGTCCGCTCTCTCCGCCCGGAAACCGTCGATGGTGAGGA
GGGGGGAGGGTAGTGTCGGCATGGGTAGGAGGGCGGATGCGTCGAATTGA
AGGAGGGTAGAAGTCGAGTAAGGCCAGATTGTAAAATAAAATTAAGCTGA
GGGGGGAGAAAAAGGAAGGTTCAGAGTGTGAAAATTAGCTTCGTATGGGG
CGGAAGGAAATTGCACCCTGCGGGATAGGAAACTGCCGTGGACAAGAGAG
GCCCTCGATGTCCGGAAAACTGTTTCGTAAATGAGCTTGGAAAAATGAAA
AATTTATTAAGATGTCGATCTTTGT
back to top

protein sequence of rna7702

>rna7702-protein ID=rna7702-protein|Name=rna7702|organism=Nannochloropsis gaditana|type=polypeptide|length=109bp
MPLSLLSRYGRQRASACHGLNARNFYTSSSWLLQRQHATKHKHSVLPQTS
FWVRGLASAASDEIPDHIAKLRNIGISAHIDSGKTTLTERILFYTGRIRE
IHDVKVRGG
back to top

mRNA from alignment at CM002473.1:127019..127614+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7702 ID=rna7702|Name=rna7702|organism=Nannochloropsis gaditana|type=mRNA|length=596bp|location=Sequence derived from alignment at CM002473.1:127019..127614+ (Nannochloropsis gaditana)
GAGCAGGAGGTTTGatgcccctctctctcctttcccggTACGGACGTCAA
CGGGCCTCAGCATGTCATGGCTTGAACGCCCGCAATTTCTACACCAGCAG
TTCATGGCTGCTGCAACGGCAACATGCAACGAAACATAAACATTCAGTTC
TCCCGCAAACGTCTTTTTGGGTCCGGGGTTTGGCATCAGCGGCTTCGGTA
CGTCTGTCTAGTTGGCGGGACCGCCACGCATGTCTTGAAGTGCTCGAGCC
TCATGGGCAGGAATgtgcatttttttggggctaTTGGAGTTGTTTTGGAT
TCTAGTTCACAAGATAGAGTCCCAATCAGTATCAATTCTGTAGAGAAGCC
CTTTCATGGCTCCATCCTGTCCAGTTGCCACTACTGCCGGCGCAAacact
tccttccccctccccttccccgccccccccctccctctttttcaaaAAGG
ACGAGATACCAGACCACATCGCCAAGCTCCGCAACATCGGGATCTCGGCC
CACATTGACAGCGGGAAGACGACCTTGACGGAGCGCATTCTCTTCTACAC
GGGCAGAATCCGGGAGATCCACGACGtgaaggtgagggggggaTGA
back to top

Coding sequence (CDS) from alignment at CM002473.1:127019..127614+

>rna7702 ID=rna7702|Name=rna7702|organism=Nannochloropsis gaditana|type=CDS|length=660bp|location=Sequence derived from alignment at CM002473.1:127019..127614+ (Nannochloropsis gaditana)
atgcccctctctctcctttcccggTACGGACGTCAACGGGCCTCAGCATG
TCATGGCTTGAACGCCCGCAATTTCTACACCAGCAGTTCATGGCTGCTGC
AACGGCAACATGCAACGAAACATAAACATTCAGTTCTCCCGCAAACGTCT
TTTTGGGTCCGGGGTTTGGCATCAGCGGCTTCGGACGAGATACCAGACCA
CATCGCCAAGCTCCGCAACATCGGGATCTCGGCCCACATTGACAGCGGGA
AGACGACCTTGACGGAGCGCATTCTCTTCTACACGGGCAGAATCCGGGAG
ATCCACGACGtgaaggtgagggggggaTGAatgcccctctctctcctttc
ccggTACGGACGTCAACGGGCCTCAGCATGTCATGGCTTGAACGCCCGCA
ATTTCTACACCAGCAGTTCATGGCTGCTGCAACGGCAACATGCAACGAAA
CATAAACATTCAGTTCTCCCGCAAACGTCTTTTTGGGTCCGGGGTTTGGC
ATCAGCGGCTTCGGACGAGATACCAGACCACATCGCCAAGCTCCGCAACA
TCGGGATCTCGGCCCACATTGACAGCGGGAAGACGACCTTGACGGAGCGC
ATTCTCTTCTACACGGGCAGAATCCGGGAGATCCACGACGtgaaggtgag
ggggggaTGA
back to top
Synonyms
Publications