EWM22993.1, cds7681 (CDS) Nannochloropsis gaditana

Overview
NameEWM22993.1
Unique Namecds7681
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002473.1:127033..127215 +
Alignment locationCM002473.1:127468..127614 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22993.1
Productmitochondrial elongation factor
Orig transcript idgnl|cribi|Naga_101469g1.3190.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:127033..127215 +
CM002473.1supercontigCM002473.1:127468..127614 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0008135translation factor activity, RNA binding
GO:0000166nucleotide binding
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
Homology
BLAST of EWM22993.1 vs. NCBI_GenBank
Match: gi|585103747|gb|EWM22993.1| (mitochondrial elongation factor [Nannochloropsis gaditana])

HSP 1 Score: 225.713 bits (574), Expect = 5.984e-75
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0
Query:    1 MPLSLLSRYGRQRASACHGLNARNFYTSSSWLLQRQHATKHKHSVLPQTSFWVRGLASAASDEIPDHIAKLRNIGISAHIDSGKTTLTERILFYTGRIREIHDVKVRGG 109
            MPLSLLSRYGRQRASACHGLNARNFYTSSSWLLQRQHATKHKHSVLPQTSFWVRGLASAASDEIPDHIAKLRNIGISAHIDSGKTTLTERILFYTGRIREIHDVKVRGG
Sbjct:    1 MPLSLLSRYGRQRASACHGLNARNFYTSSSWLLQRQHATKHKHSVLPQTSFWVRGLASAASDEIPDHIAKLRNIGISAHIDSGKTTLTERILFYTGRIREIHDVKVRGG 109          
BLAST of EWM22993.1 vs. NCBI_GenBank
Match: gi|290990117|ref|XP_002677683.1| (mitochondrial elongation factor EfG [Naegleria gruberi] >gi|284091292|gb|EFC44939.1| mitochondrial elongation factor EfG [Naegleria gruberi])

HSP 1 Score: 80.8777 bits (198), Expect = 1.485e-15
Identity = 36/39 (92.31%), Postives = 39/39 (100.00%), Query Frame = 0
Query:   67 HIAKLRNIGISAHIDSGKTTLTERILFYTGRIREIHDVK 105
            H+AKLRNIGISAHIDSGKTTLTERILFYTGRI+EIH+VK
Sbjct:   11 HLAKLRNIGISAHIDSGKTTLTERILFYTGRIKEIHEVK 49          
BLAST of EWM22993.1 vs. NCBI_GenBank
Match: gi|1178060116|gb|ORE14710.1| (translation elongation factor G [Rhizopus microsporus])

HSP 1 Score: 80.4925 bits (197), Expect = 2.174e-15
Identity = 45/83 (54.22%), Postives = 56/83 (67.47%), Query Frame = 0
Query:   27 TSSSWLLQRQHATKHKHSVLPQTSFWVRGLASAASDEIPDHIAKLRNIGISAHIDSGKTTLTERILFYTGRIREIHDVKVRGG 109
            T+SS+L    H+T    S+ P      R  ++ A  +  D + KLRNIGISAHIDSGKTT TERIL+YTGRI+EIHDV+ R G
Sbjct:   20 TASSFLEATPHST---FSLFP-IGMGRRFQSTEADAKDLDRLKKLRNIGISAHIDSGKTTCTERILYYTGRIKEIHDVRGRDG 98          
BLAST of EWM22993.1 vs. NCBI_GenBank
Match: gi|1183487231|gb|ORZ10951.1| (translation elongation factor G [Lobosporangium transversale] >gi|1183488031|gb|ORZ11743.1| translation elongation factor G [Lobosporangium transversale])

HSP 1 Score: 80.1073 bits (196), Expect = 2.944e-15
Identity = 41/87 (47.13%), Postives = 55/87 (63.22%), Query Frame = 0
Query:   20 LNARNFYTSSSWLLQRQHATKHKHSVLPQTSFWVRGLASAASDEI-PDHIAKLRNIGISAHIDSGKTTLTERILFYTGRIREIHDVK 105
             N    Y    W +Q+ HA +    VL       +  +SA++  + P  I +LRNIGISAHIDSGKTTLTER+LF+TGRI +IH+V+
Sbjct:   41 FNPDMLYLQPRWHVQKDHAAQGTGKVL--VGMIQKRWSSASAQPVKPGSIDRLRNIGISAHIDSGKTTLTERVLFFTGRINQIHEVR 125          
BLAST of EWM22993.1 vs. NCBI_GenBank
Match: gi|729712284|emb|CEI91397.1| (Putative Elongation factor G [Rhizopus microsporus])

HSP 1 Score: 80.1073 bits (196), Expect = 3.030e-15
Identity = 45/83 (54.22%), Postives = 56/83 (67.47%), Query Frame = 0
Query:   27 TSSSWLLQRQHATKHKHSVLPQTSFWVRGLASAASDEIPDHIAKLRNIGISAHIDSGKTTLTERILFYTGRIREIHDVKVRGG 109
            T+SS+L    H+T    S+ P      R  ++ A  +  D + KLRNIGISAHIDSGKTT TERIL+YTGRI+EIHDV+ R G
Sbjct:   20 TASSFLEATPHST---FSLFP-IGMGRRFQSTEADAKDLDRLKKLRNIGISAHIDSGKTTCTERILYYTGRIKEIHDVRGRDG 98          
BLAST of EWM22993.1 vs. NCBI_GenBank
Match: gi|213405577|ref|XP_002173560.1| (translation elongation factor G [Schizosaccharomyces japonicus yFS275] >gi|261263158|sp|B6K286.1|EFGM_SCHJY RecName: Full=Elongation factor G, mitochondrial; Short=EF-Gmt; AltName: Full=Elongation factor G 1, mitochondrial; Short=mEF-G 1; AltName: Full=Elongation factor G1; Flags: Precursor >gi|212001607|gb|EEB07267.1| translation elongation factor G [Schizosaccharomyces japonicus yFS275])

HSP 1 Score: 79.7221 bits (195), Expect = 3.403e-15
Identity = 35/60 (58.33%), Postives = 49/60 (81.67%), Query Frame = 0
Query:   46 LPQTSFWVRGLASAASDEIPDHIAKLRNIGISAHIDSGKTTLTERILFYTGRIREIHDVK 105
            +P+  F+  G   + ++ IPD +++LRNIGISAHIDSGKTT TER+LFYTGRI++IH+V+
Sbjct:   40 IPKRLFYSTG---SRANSIPDALSRLRNIGISAHIDSGKTTFTERVLFYTGRIKDIHEVR 96          
BLAST of EWM22993.1 vs. NCBI_GenBank
Match: gi|511010461|gb|EPB91682.1| (elongation factor G, mitochondrial [Mucor circinelloides f. circinelloides 1006PhL])

HSP 1 Score: 79.337 bits (194), Expect = 4.463e-15
Identity = 42/74 (56.76%), Postives = 52/74 (70.27%), Query Frame = 0
Query:   36 QHATKHKHSVLPQTSFWVRGLASAASDEIPDHIAKLRNIGISAHIDSGKTTLTERILFYTGRIREIHDVKVRGG 109
            Q A ++  S+LP      R  +S A  +  + + KLRNIGISAHIDSGKTT TERIL+YTGRI+EIHDV+ R G
Sbjct:   26 QAAPQNTFSLLP-IGLGRRWQSSEAEAKDLERLQKLRNIGISAHIDSGKTTCTERILYYTGRIKEIHDVRGRDG 98          
BLAST of EWM22993.1 vs. NCBI_GenBank
Match: gi|1178051020|gb|ORE06627.1| (translation elongation factor G [Rhizopus microsporus var. microsporus])

HSP 1 Score: 79.337 bits (194), Expect = 4.550e-15
Identity = 45/83 (54.22%), Postives = 56/83 (67.47%), Query Frame = 0
Query:   27 TSSSWLLQRQHATKHKHSVLPQTSFWVRGLASAASDEIPDHIAKLRNIGISAHIDSGKTTLTERILFYTGRIREIHDVKVRGG 109
            T+SS+L    H+T    S+ P      R  ++ A  +  D + KLRNIGISAHIDSGKTT TERIL+YTGRI+EIHDV+ R G
Sbjct:   20 TASSFLEVTPHST---FSLFP-IGMGRRFQSTEADAKDLDRLNKLRNIGISAHIDSGKTTCTERILYYTGRIKEIHDVRGRDG 98          
BLAST of EWM22993.1 vs. NCBI_GenBank
Match: gi|754343650|ref|XP_004364364.2| (translation elongation factor G [Capsaspora owczarzaki ATCC 30864] >gi|765549527|gb|KJE90148.1| translation elongation factor G [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 79.337 bits (194), Expect = 5.021e-15
Identity = 38/55 (69.09%), Postives = 45/55 (81.82%), Query Frame = 0
Query:   55 GLASAASDEIPDHIAKLRNIGISAHIDSGKTTLTERILFYTGRIREIHDVKVRGG 109
             +AS+A       +A++RNIGISAHIDSGKTTLTERILFYTGRI+EIH+VK R G
Sbjct:   55 AVASSADGAASFDLARVRNIGISAHIDSGKTTLTERILFYTGRIKEIHEVKGRDG 109          
BLAST of EWM22993.1 vs. NCBI_GenBank
Match: gi|758348116|dbj|GAN09590.1| (elongation factor G mitochondrial [Mucor ambiguus])

HSP 1 Score: 79.337 bits (194), Expect = 5.226e-15
Identity = 42/74 (56.76%), Postives = 52/74 (70.27%), Query Frame = 0
Query:   36 QHATKHKHSVLPQTSFWVRGLASAASDEIPDHIAKLRNIGISAHIDSGKTTLTERILFYTGRIREIHDVKVRGG 109
            Q A ++  S+LP      R  +S A  +  + + KLRNIGISAHIDSGKTT TERIL+YTGRI+EIHDV+ R G
Sbjct:   26 QAAPQNTFSLLP-IGLGRRWQSSEAEAKDLERLQKLRNIGISAHIDSGKTTCTERILYYTGRIKEIHDVRGRDG 98          
The following BLAST results are available for this feature:
BLAST of EWM22993.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103747|gb|EWM22993.1|5.984e-75100.00mitochondrial elongation factor [Nannochloropsis g... [more]
gi|290990117|ref|XP_002677683.1|1.485e-1592.31mitochondrial elongation factor EfG [Naegleria gru... [more]
gi|1178060116|gb|ORE14710.1|2.174e-1554.22translation elongation factor G [Rhizopus microspo... [more]
gi|1183487231|gb|ORZ10951.1|2.944e-1547.13translation elongation factor G [Lobosporangium tr... [more]
gi|729712284|emb|CEI91397.1|3.030e-1554.22Putative Elongation factor G [Rhizopus microsporus... [more]
gi|213405577|ref|XP_002173560.1|3.403e-1558.33translation elongation factor G [Schizosaccharomyc... [more]
gi|511010461|gb|EPB91682.1|4.463e-1556.76elongation factor G, mitochondrial [Mucor circinel... [more]
gi|1178051020|gb|ORE06627.1|4.550e-1554.22translation elongation factor G [Rhizopus microspo... [more]
gi|754343650|ref|XP_004364364.2|5.021e-1569.09translation elongation factor G [Capsaspora owczar... [more]
gi|758348116|dbj|GAN09590.1|5.226e-1556.76elongation factor G mitochondrial [Mucor ambiguus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7702rna7702Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications