rna77, rna77 (mRNA) Nannochloropsis gaditana

Overview
Namerna77
Unique Namerna77
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1197
Alignment locationCM002455.1:218798..219710 +

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Properties
Property NameValue
Productbeach domain-containing protein
Orig transcript idgnl|cribi|Naga_100033g1.8385.mrna
Orig protein idgnl|cribi|Naga_100033g1.8385
GenelvsC
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:218798..219710 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
lvsCgene75Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna77rna77-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30546.1cds77Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna77 ID=rna77|Name=rna77|organism=Nannochloropsis gaditana|type=mRNA|length=1197bp
ATGCACCTGAACGTGATGGCGGGCCGTTCCTTCAACGATTTGAATCAGTA
CCCCGTCTTCCCTTGGGTACTGGCCGACTACACGTCCCCCTCCCTCGACC
TCTCCCTCCCCAGCACCTTCCGGGACCTGAGCAAGCCCGTGGGGGCCTTG
GACGAGGGACGCGCCCGAACCTTTTGGCACCGGTACCAGGCGATGAAATT
GGAGGAGGCGGAGGAGGCGGCGGAGGAGGACGGGACGGGGGCCCTCCGCA
TCCCTCCCTTCATGTACGGGTCCCACTACTCCTCTGCGGCTCTCGTCCTC
CATTTCTTGGTCCGTCAGGAACCTTTCGCCAGCCACGCCGTCGCGTTGCA
ATCGGGAAGCTTCGACTGCCCCGACCGGCTCTTCTTCAGCCTCCGCGCGG
CCTGGGAAAGCGCCCTCCGTTCCACCACGGACGTGAAGGAGCTGATCCCC
GAGCTGTTCACCACGCCCGAATGCCTCCAAAACACGAATCGGCTCCCCCT
GGGGCGGTTGCAGGACGGACAGGGACGCCGGGTGGGGGACGTGGAGCTCC
CTCCTTGGGCCCGAAACGCCCACGACTTTGTCCGTCAGCACCGGCAGGCC
TTGGAAAGCGAGTACGTGAGTTCCCATTTGCACGAATGGATCGACCTGAT
CTTTGGCTGGAAGCAGCGCGGCCCCCCCGCGGAAGCTGCCCGGAACGTGT
TTTACTACCTCACCTACGAAGGAGCGGTGGATGTGGACCGGATCGACGAT
CCCGTCCTCAAGGAAGCGACGGAGGCGCAGATCCGTCACTACGGACAAAC
GCCCTCCCAGCTTTTCAGCCAGCCCCACCCCCCACGCCTCCCGCTACACG
ATACGGTCCAACCCCTCGGGGCCTCCCTGGCCTCTCTGACGCACCTCCGT
GCCTATACCCCTCCTCAACACCTCCTTAGAAATCTGTCCCTACCTGCCTT
CTCCCATTGCCCCTCCACCTTCGCCTCGCCCAGCGGGTCCACGGCCCTCC
CTCCTTCCCTCCCTTCCTCCCTCCCTCCTTCCCTCCCTTCCCCTCCCGTC
CTCACCGTCCTGGCAGCGCCCAACAAGATCCACGTGGTGTTCAACGACTT
CCGGGTAGCTTCTTACAGATGGTCGGCCATGCCTGATTCCCACGACTTTC
CCTTCACTGTCCGTTTCGAGAGACTGCGGACGCTGCCGTGCCTGTGA
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protein sequence of rna77

>rna77-protein ID=rna77-protein|Name=rna77|organism=Nannochloropsis gaditana|type=polypeptide|length=260bp
MENRAHVSLDPSLPNGGADHGEPQGGKEGKSEGGEGGRGGGEGVAQGEER
DEPPALALAALPLLPIAPRMTTLLYSHAVLVGHDTPVLSLAYSSHLDLCA
SGARDGSVVVHRVQKARFVRRLMYPGRHPVDRLHLCAETGVLTMHSHADA
GLAAFSLNGFPLARLPQGKERLSALLASKDGQFLLTGGEEGVLSVRQGHS
LKLLHTLRVGHGPITSLAFTPDHQYILVGCEDGSFSVVADPLSRLQMLHR
VLSRTFFGVI
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mRNA from alignment at CM002455.1:218798..219710+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna77 ID=rna77|Name=rna77|organism=Nannochloropsis gaditana|type=mRNA|length=913bp|location=Sequence derived from alignment at CM002455.1:218798..219710+ (Nannochloropsis gaditana)
aTGGAGAACAGGGCCCATGTCTCCCTAGACCCGTCGCTTCCGAACGGAGG
GGCGGACCATGGGGagccgcagggagggaaggagggaaagtcggaaggag
gggagggagggcggggggggggggagggggtcgctcagggagaggagagg
gacgagccccccgcccttgccctggcggcgctccccctcctccccatcgc
aCCAAGGATGACCACGCTCTTGTACAGCCACGCCGTCCTTGTCGGTCATG
ACacccctgtcctctccctcgcctacTCCAGCCACCTGGATCTGTGCGCC
TCGGGGGCCCGGGACGGCAGCGTGGTGGTGCACCGGGTTCAAAAAGCCAG
GTTTGTCCGCAGGCTCATGTATCCGGGTCGGCACCCCGTGGACCGCCTGC
ATTTGTGCGCCGAAACCGGCGTCCTCACTATGCACTCGCATGCCGACGCC
GGGCTCGCGGCCTTTTCCCTGAACGGATTCCCGCTTGCCCGGCTTCCTCA
GGGGAAAGAACGTCTGTCCGCGTTGTTGGCCAGCAAGGACGGGCAGTTTT
TGTTgacgggcggggaggaaggggtgcttTCCGTGCGGCAGGGGCACAGC
TTGAAGCTCTTGCACACATTGCGGGTAGGCCATGGCCCCATCACCTCGCT
GGCTTTCACGCCGGACCACCAGTATATCCTGGTGGGGTGCGAAGACGGGA
GCTTTTCCGTCGTGGCCGACCCTCTGAGTCGGTTGCAGATGTTGCATCGT
GTATTAAGCCGGACGTTTTTTGGAGTGATATAAAGCATGAGGGACATCGA
AAGGACAAACGGACGGAGCAAGCTGTGCAGGCTCCACCATTGCATTGTAC
GAAAGTAAAGCATTTGTGCAGGTATGTAATCTTCCACATAAAGAAAAGCA
TTGTTTTGATAAA
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Coding sequence (CDS) from alignment at CM002455.1:218798..219710+

>rna77 ID=rna77|Name=rna77|organism=Nannochloropsis gaditana|type=CDS|length=783bp|location=Sequence derived from alignment at CM002455.1:218798..219710+ (Nannochloropsis gaditana)
aTGGAGAACAGGGCCCATGTCTCCCTAGACCCGTCGCTTCCGAACGGAGG
GGCGGACCATGGGGagccgcagggagggaaggagggaaagtcggaaggag
gggagggagggcggggggggggggagggggtcgctcagggagaggagagg
gacgagccccccgcccttgccctggcggcgctccccctcctccccatcgc
aCCAAGGATGACCACGCTCTTGTACAGCCACGCCGTCCTTGTCGGTCATG
ACacccctgtcctctccctcgcctacTCCAGCCACCTGGATCTGTGCGCC
TCGGGGGCCCGGGACGGCAGCGTGGTGGTGCACCGGGTTCAAAAAGCCAG
GTTTGTCCGCAGGCTCATGTATCCGGGTCGGCACCCCGTGGACCGCCTGC
ATTTGTGCGCCGAAACCGGCGTCCTCACTATGCACTCGCATGCCGACGCC
GGGCTCGCGGCCTTTTCCCTGAACGGATTCCCGCTTGCCCGGCTTCCTCA
GGGGAAAGAACGTCTGTCCGCGTTGTTGGCCAGCAAGGACGGGCAGTTTT
TGTTgacgggcggggaggaaggggtgcttTCCGTGCGGCAGGGGCACAGC
TTGAAGCTCTTGCACACATTGCGGGTAGGCCATGGCCCCATCACCTCGCT
GGCTTTCACGCCGGACCACCAGTATATCCTGGTGGGGTGCGAAGACGGGA
GCTTTTCCGTCGTGGCCGACCCTCTGAGTCGGTTGCAGATGTTGCATCGT
GTATTAAGCCGGACGTTTTTTGGAGTGATATAA
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Synonyms
Publications