EWM30546.1, cds77 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30546.1 vs. NCBI_GenBank
Match: gi|585113213|gb|EWM30546.1| (beach domain-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 516.538 bits (1329), Expect = 0.000e+0 Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 0
Query: 1 MENRAHVSLDPSLPNGGADHGEPQGGKEGKSEGGEGGRGGGEGVAQGEERDEPPALALAALPLLPIAPRMTTLLYSHAVLVGHDTPVLSLAYSSHLDLCASGARDGSVVVHRVQKARFVRRLMYPGRHPVDRLHLCAETGVLTMHSHADAGLAAFSLNGFPLARLPQGKERLSALLASKDGQFLLTGGEEGVLSVRQGHSLKLLHTLRVGHGPITSLAFTPDHQYILVGCEDGSFSVVADPLSRLQMLHRVLSRTFFGVI 260
MENRAHVSLDPSLPNGGADHGEPQGGKEGKSEGGEGGRGGGEGVAQGEERDEPPALALAALPLLPIAPRMTTLLYSHAVLVGHDTPVLSLAYSSHLDLCASGARDGSVVVHRVQKARFVRRLMYPGRHPVDRLHLCAETGVLTMHSHADAGLAAFSLNGFPLARLPQGKERLSALLASKDGQFLLTGGEEGVLSVRQGHSLKLLHTLRVGHGPITSLAFTPDHQYILVGCEDGSFSVVADPLSRLQMLHRVLSRTFFGVI
Sbjct: 1 MENRAHVSLDPSLPNGGADHGEPQGGKEGKSEGGEGGRGGGEGVAQGEERDEPPALALAALPLLPIAPRMTTLLYSHAVLVGHDTPVLSLAYSSHLDLCASGARDGSVVVHRVQKARFVRRLMYPGRHPVDRLHLCAETGVLTMHSHADAGLAAFSLNGFPLARLPQGKERLSALLASKDGQFLLTGGEEGVLSVRQGHSLKLLHTLRVGHGPITSLAFTPDHQYILVGCEDGSFSVVADPLSRLQMLHRVLSRTFFGVI 260
BLAST of EWM30546.1 vs. NCBI_GenBank
Match: gi|971510955|dbj|GAQ87254.1| (WD40 and Beach domain-containing protein [Klebsormidium nitens]) HSP 1 Score: 108.227 bits (269), Expect = 6.537e-23 Identity = 68/169 (40.24%), Postives = 98/169 (57.99%), Query Frame = 0
Query: 79 VLVGHDTPVLSLAYSSHLDLCASGARDGSVVVHRVQKARFVRRLMYPGRHPVDRLHLCAETGVLTMHSHADAGLAAFSLNGFPLARLPQGKERLSALLASKDGQFLLTGGEEGVLSVRQGHSLKLLHTLRVGHGPITSLAFTPDHQYILVGCEDGS---FSVVADPLSR 244
VL GHD + +A S LD+ ASG++D SV++H ++ R++R +P + VDRL L + G++ ++SH D L SLNG LA + RLS + S G F++TGGE G + VR H L+++ PITSL TP+ + LVG +DGS FSV A L +
Sbjct: 3388 VLCGHDDVINCVAVSRDLDVVASGSKDASVILHTLRNGRYLRSFAHPSKGSVDRLVL-SRNGMVLLYSHDDLMLHVVSLNGAWLAH-AEANGRLSCIAVSTSGDFIVTGGERGSIVVRWVHDLQVVRRYEGTGVPITSLHVTPEDCF-LVGLQDGSLLIFSVEAQQLKK 3553
BLAST of EWM30546.1 vs. NCBI_GenBank
Match: gi|1160567495|ref|XP_020427426.1| (BEACH domain-containing protein [Polysphondylium pallidum PN500] >gi|281201078|gb|EFA75292.1| BEACH domain-containing protein [Polysphondylium pallidum PN500]) HSP 1 Score: 106.686 bits (265), Expect = 1.893e-22 Identity = 52/161 (32.30%), Postives = 97/161 (60.25%), Query Frame = 0
Query: 79 VLVGHDTPVLSLAYSSHLDLCASGARDGSVVVHRVQKARFVRRLMYPGRHPVDRLHLCAETGVLTMHSHADAGLAAFSLNGFPLARLPQGKERLSALLASKDGQFLLTGGEEGVLSVRQGHSLKLLHTLRVGHGPITSLAFTPDHQYILVGCEDGSFSVVA 239
+L GHD V + + LD+C SG++DG+ ++H +++ +VR + P + PV + + + G + ++S AD + +S+NG L + ERL +++ S+D ++L++GG++G + +R ++LK H L PI SLA D ++++VG EDG ++A
Sbjct: 3184 ILYGHDDEVTCVDLNIELDICISGSKDGTCIIHNLRRGEYVRTISLPKQSPVSKCSI-SNQGHIVIYSQADLVIYLYSING-QLLKSVDTHERLHSIIISRDSEYLISGGDKGTVVLRTLYNLKFAHKLSF-DTPINSLAMGSDQKHLMVGLEDGRLLIIA 3341
BLAST of EWM30546.1 vs. NCBI_GenBank
Match: gi|298705738|emb|CBJ49046.1| (similar to LPS-responsive vesicle trafficking, beach and anchor containing isoform 5 [Ectocarpus siliculosus]) HSP 1 Score: 106.301 bits (264), Expect = 2.319e-22 Identity = 65/192 (33.85%), Postives = 99/192 (51.56%), Query Frame = 0
Query: 79 VLVGHDTPVLSLAYSSHLDLCASGARDGSVVVHRVQKARFVRRLMY-----------PGRHPVDRLHLCAETGVLTMHSHADAGLAAFSLNGFPLARLPQGKERLSALLASKDGQFLLTGGEEGVLSVRQGHSLKLLHTLRVG-HGPITSLAFTPDHQYILVGCEDGSFSVVADPLSRLQMLHRVLSRTFFG 258
VL GH+ P+ LA S LD SGA DG +V+H ++ +VR+ P + G + +HS D L +SLNG LA ++ LL + G++LL GG++G++ V H L +LHT+ + HG +T + +PDH+Y+L G +DG S++ D R++ML L R F G
Sbjct: 1734 VLYGHEAPITCLAVSEDLDTVVSGASDGRIVLHCLKNGCYVRQYRCGTGSATATDAAEASTPEASQLAFSRHGDVVVHSWTDRSLHRYSLNGTRLA-TAVAPTTINCLLTAGGGEYLLAGGQDGLIRVHTLHDLCVLHTIDLQQHGGVTCMRMSPDHEYLLAGSQDGEVSIITDARKRMRMLDLALRRAFVG 1924
BLAST of EWM30546.1 vs. NCBI_GenBank
Match: gi|470269251|ref|XP_004362470.1| (BEACH domain-containing protein [Dictyostelium fasciculatum] >gi|328876256|gb|EGG24619.1| BEACH domain-containing protein [Dictyostelium fasciculatum]) HSP 1 Score: 105.916 bits (263), Expect = 3.699e-22 Identity = 54/163 (33.13%), Postives = 100/163 (61.35%), Query Frame = 0
Query: 79 VLVGHDTPVLSLAYSSHLDLCASGARDGSVVVHRVQKARFVRRLMYPGRHPVDRLHLCAET--GVLTMHSHADAGLAAFSLNGFPLARLPQGKERLSALLASKDGQFLLTGGEEGVLSVRQGHSLKLLHTLRVGHGPITSLAFTPDHQYILVGCEDGSFSVVA 239
+L GHD + + + LD+C SG++DG+ ++H ++ +VR ++ P + PV +CA + G + ++S AD + +S+NG L + + ERL++++ +KD ++L+TGG++G + +R ++LK H L PI SLA D ++++VG EDG ++A
Sbjct: 3387 ILYGHDDEITCVDVNVELDICLSGSKDGTCIIHNLRHGEYVRSIILPKQAPVT---ICAISNHGHIVIYSQADFVIYLYSINGQFLQSV-ETHERLNSIIITKDSEYLITGGDKGTVILRTLYNLKFAHKLSFDQ-PIHSLAMGSDQKHLMVGLEDGRLIIIA 3544
BLAST of EWM30546.1 vs. NCBI_GenBank
Match: gi|330800468|ref|XP_003288258.1| (hypothetical protein DICPUDRAFT_14407 [Dictyostelium purpureum] >gi|325081714|gb|EGC35220.1| hypothetical protein DICPUDRAFT_14407, partial [Dictyostelium purpureum]) HSP 1 Score: 104.375 bits (259), Expect = 1.441e-21 Identity = 55/162 (33.95%), Postives = 97/162 (59.88%), Query Frame = 0
Query: 79 VLVGHDTPVLSLAYSSHLDLCASGARDGSVVVHRVQKARFVRRLMYPGRHPVDRLHLCAETGVLTMHSHADAGLAAFSLNGFPLARLPQGKERLSALLASKDGQFLLTGGEEGVLSVRQGHSLKLL-HTLRVGHGPITSLAFTPDHQYILVGCEDGSFSVVA 239
+L GHD + + + LD+ SG++DG+ ++H ++ +VR + P + P+ + + + G + ++S AD + +S+NG L + ERL +++ SKD ++LLTGGE+GV+ +R ++LK H L G PI SLA D ++++VG EDG ++A
Sbjct: 2156 ILYGHDDEITCVDVNVGLDISISGSKDGTCIIHNLKHGEYVRSIYLPKQTPISLIAI-SNQGYIIIYSQADLTMYLYSING-QLLKTVYTHERLHSIIISKDSEYLLTGGEKGVVVIRTLYNLKQTPHKLVFG-TPIHSLAMASDQKHLMVGLEDGRLLIIA 2314
BLAST of EWM30546.1 vs. NCBI_GenBank
Match: gi|166240454|ref|XP_640913.2| (BEACH domain-containing protein [Dictyostelium discoideum AX4] >gi|182662409|sp|Q54U63.2|LVSC_DICDI RecName: Full=BEACH domain-containing protein lvsC >gi|165988606|gb|EAL66782.2| BEACH domain-containing protein [Dictyostelium discoideum AX4]) HSP 1 Score: 102.064 bits (253), Expect = 8.832e-21 Identity = 52/161 (32.30%), Postives = 94/161 (58.39%), Query Frame = 0
Query: 79 VLVGHDTPVLSLAYSSHLDLCASGARDGSVVVHRVQKARFVRRLMYPGRHPVDRLHLCAETGVLTMHSHADAGLAAFSLNGFPLARLPQGKERLSALLASKDGQFLLTGGEEGVLSVRQGHSLKLLHTLRVGHGPITSLAFTPDHQYILVGCEDGSFSVVA 239
+L GHD + + + LD+ SG++DG+ ++H ++ +VR + P + P+ + + + G + ++S AD + +S+NG L + ERL +++ SKD ++L+TGGE GV+ +R +LK + V PI SLA D ++++VG EDG ++A
Sbjct: 2308 ILYGHDDEITCVDVNVGLDISISGSKDGTCIIHNLKHGEYVRSIYLPRQSPISLIAI-SNQGYIVIYSQADLMIYLYSING-GLLKTVDTHERLHSIIISKDSEYLITGGERGVVVIRTLFNLKPTNHKLVFGTPIHSLAMASDQKHLMVGLEDGRLLIIA 2466
BLAST of EWM30546.1 vs. NCBI_GenBank
Match: gi|302795720|ref|XP_002979623.1| (hypothetical protein SELMODRAFT_110788, partial [Selaginella moellendorffii] >gi|300152871|gb|EFJ19512.1| hypothetical protein SELMODRAFT_110788, partial [Selaginella moellendorffii]) HSP 1 Score: 101.679 bits (252), Expect = 1.041e-20 Identity = 58/161 (36.02%), Postives = 95/161 (59.01%), Query Frame = 0
Query: 79 VLVGHDTPVLSLAYSSHLDLCASGARDGSVVVHRVQKARFVRRLMYPGRHPVDRLHLCAETGVLTMHSHADAGLAAFSLNGFPLARLPQGKERLSALLASKDGQFLLTGGEEGVLSVRQGHSLKLLHTLRVGHGPITSLAFTPDHQYILVGCEDGSFSVVA 239
VL GHD V + + LDL SG+ DG+ +++ +++ R+VR L++P R + L + + G++ + S+ D +FS+NG LA + RLS + S G+F++ GG++G ++VR+ HSL+L+H PI SL TP+ + LVG DG F + A
Sbjct: 2401 VLCGHDDAVTCVVVRTELDLVVSGSEDGTCILYTLRQGRYVRSLVHPSRKSISLL-VVSPHGLVGLFSNKDLNFHSFSVNGKHLAS-AELNGRLSCMELSSCGEFVVCGGDQGYVTVRKLHSLELVHRYDTAGSPIVSLCVTPEDCF-LVGTRDGRFLIYA 2558
BLAST of EWM30546.1 vs. NCBI_GenBank
Match: gi|302791770|ref|XP_002977651.1| (hypothetical protein SELMODRAFT_107448, partial [Selaginella moellendorffii] >gi|300154354|gb|EFJ20989.1| hypothetical protein SELMODRAFT_107448, partial [Selaginella moellendorffii]) HSP 1 Score: 101.293 bits (251), Expect = 1.161e-20 Identity = 58/161 (36.02%), Postives = 95/161 (59.01%), Query Frame = 0
Query: 79 VLVGHDTPVLSLAYSSHLDLCASGARDGSVVVHRVQKARFVRRLMYPGRHPVDRLHLCAETGVLTMHSHADAGLAAFSLNGFPLARLPQGKERLSALLASKDGQFLLTGGEEGVLSVRQGHSLKLLHTLRVGHGPITSLAFTPDHQYILVGCEDGSFSVVA 239
VL GHD V + + LDL SG+ DG+ +++ +++ R+VR L++P R + L + + G++ + S+ D +FS+NG LA + RLS + S G+F++ GG++G ++VR+ HSL+L+H PI SL TP+ + LVG DG F + A
Sbjct: 1048 VLCGHDDAVTCVVVRTELDLVVSGSEDGTCILYTLRQGRYVRSLVHPSRKSISLL-VVSPHGLVGLFSNKDLNFHSFSVNGKHLAS-AELNGRLSCMELSSCGEFVVCGGDQGYVTVRKLHSLELVHRYDAAGSPIVSLCVTPEDCF-LVGTRDGRFLIYA 1205
BLAST of EWM30546.1 vs. NCBI_GenBank
Match: gi|831790109|ref|XP_012759282.1| (hypothetical protein SAMD00019534_003950 [Acytostelium subglobosum LB1] >gi|735859914|dbj|GAM17220.1| hypothetical protein SAMD00019534_003950 [Acytostelium subglobosum LB1]) HSP 1 Score: 100.523 bits (249), Expect = 2.873e-20 Identity = 56/162 (34.57%), Postives = 96/162 (59.26%), Query Frame = 0
Query: 79 VLVGHDTPVLSLAYSSHLDLCASGARDGSVVVHRVQKARFVRRLMYPGRHPVDRLHLC--AETGVLTMHSHADAGLAAFSLNGFPLARLPQGKERLSALLASKDGQFLLTGGEEGVLSVRQGHSLKLLHTLRVGHGPITSLAFTPDHQYILVGCEDGSFSVV 238
+L GHD + + + LD+C SG++DGS ++H ++K +VR + P + V +C + G + ++S D + +S+NG L+ + ERL +++ SKD ++L++GGE+G L VR ++LK H L + ITSLA D ++++VG EDG +V
Sbjct: 3156 ILYGHDDEITCVDLNVELDICVSGSKDGSCIIHSLRKGEYVRTIYLPTQSSVS---ICCISNQGHIVIYSQDDLIIYLYSINGHLLSTV-NTHERLQSIIISKDSEYLISGGEKGTLVVRTLYNLKFAHKLTL-DTQITSLA--SDQRHLMVGMEDGRLLIV 3310 The following BLAST results are available for this feature:
BLAST of EWM30546.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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