EWM30546.1, cds77 (CDS) Nannochloropsis gaditana

Overview
NameEWM30546.1
Unique Namecds77
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:218798..219580 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30546.1
Productbeach domain-containing protein
Orig transcript idgnl|cribi|Naga_100033g1.8385.mrna
GenelvsC
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:218798..219580 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR017986WD40_repeat_dom
IPR015943WD40/YVTN_repeat-like_dom
IPR001680WD40_repeat
Homology
BLAST of EWM30546.1 vs. NCBI_GenBank
Match: gi|585113213|gb|EWM30546.1| (beach domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 516.538 bits (1329), Expect = 0.000e+0
Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 0
Query:    1 MENRAHVSLDPSLPNGGADHGEPQGGKEGKSEGGEGGRGGGEGVAQGEERDEPPALALAALPLLPIAPRMTTLLYSHAVLVGHDTPVLSLAYSSHLDLCASGARDGSVVVHRVQKARFVRRLMYPGRHPVDRLHLCAETGVLTMHSHADAGLAAFSLNGFPLARLPQGKERLSALLASKDGQFLLTGGEEGVLSVRQGHSLKLLHTLRVGHGPITSLAFTPDHQYILVGCEDGSFSVVADPLSRLQMLHRVLSRTFFGVI 260
            MENRAHVSLDPSLPNGGADHGEPQGGKEGKSEGGEGGRGGGEGVAQGEERDEPPALALAALPLLPIAPRMTTLLYSHAVLVGHDTPVLSLAYSSHLDLCASGARDGSVVVHRVQKARFVRRLMYPGRHPVDRLHLCAETGVLTMHSHADAGLAAFSLNGFPLARLPQGKERLSALLASKDGQFLLTGGEEGVLSVRQGHSLKLLHTLRVGHGPITSLAFTPDHQYILVGCEDGSFSVVADPLSRLQMLHRVLSRTFFGVI
Sbjct:    1 MENRAHVSLDPSLPNGGADHGEPQGGKEGKSEGGEGGRGGGEGVAQGEERDEPPALALAALPLLPIAPRMTTLLYSHAVLVGHDTPVLSLAYSSHLDLCASGARDGSVVVHRVQKARFVRRLMYPGRHPVDRLHLCAETGVLTMHSHADAGLAAFSLNGFPLARLPQGKERLSALLASKDGQFLLTGGEEGVLSVRQGHSLKLLHTLRVGHGPITSLAFTPDHQYILVGCEDGSFSVVADPLSRLQMLHRVLSRTFFGVI 260          
BLAST of EWM30546.1 vs. NCBI_GenBank
Match: gi|971510955|dbj|GAQ87254.1| (WD40 and Beach domain-containing protein [Klebsormidium nitens])

HSP 1 Score: 108.227 bits (269), Expect = 6.537e-23
Identity = 68/169 (40.24%), Postives = 98/169 (57.99%), Query Frame = 0
Query:   79 VLVGHDTPVLSLAYSSHLDLCASGARDGSVVVHRVQKARFVRRLMYPGRHPVDRLHLCAETGVLTMHSHADAGLAAFSLNGFPLARLPQGKERLSALLASKDGQFLLTGGEEGVLSVRQGHSLKLLHTLRVGHGPITSLAFTPDHQYILVGCEDGS---FSVVADPLSR 244
            VL GHD  +  +A S  LD+ ASG++D SV++H ++  R++R   +P +  VDRL L +  G++ ++SH D  L   SLNG  LA   +   RLS +  S  G F++TGGE G + VR  H L+++        PITSL  TP+  + LVG +DGS   FSV A  L +
Sbjct: 3388 VLCGHDDVINCVAVSRDLDVVASGSKDASVILHTLRNGRYLRSFAHPSKGSVDRLVL-SRNGMVLLYSHDDLMLHVVSLNGAWLAH-AEANGRLSCIAVSTSGDFIVTGGERGSIVVRWVHDLQVVRRYEGTGVPITSLHVTPEDCF-LVGLQDGSLLIFSVEAQQLKK 3553          
BLAST of EWM30546.1 vs. NCBI_GenBank
Match: gi|1160567495|ref|XP_020427426.1| (BEACH domain-containing protein [Polysphondylium pallidum PN500] >gi|281201078|gb|EFA75292.1| BEACH domain-containing protein [Polysphondylium pallidum PN500])

HSP 1 Score: 106.686 bits (265), Expect = 1.893e-22
Identity = 52/161 (32.30%), Postives = 97/161 (60.25%), Query Frame = 0
Query:   79 VLVGHDTPVLSLAYSSHLDLCASGARDGSVVVHRVQKARFVRRLMYPGRHPVDRLHLCAETGVLTMHSHADAGLAAFSLNGFPLARLPQGKERLSALLASKDGQFLLTGGEEGVLSVRQGHSLKLLHTLRVGHGPITSLAFTPDHQYILVGCEDGSFSVVA 239
            +L GHD  V  +  +  LD+C SG++DG+ ++H +++  +VR +  P + PV +  + +  G + ++S AD  +  +S+NG  L +     ERL +++ S+D ++L++GG++G + +R  ++LK  H L     PI SLA   D ++++VG EDG   ++A
Sbjct: 3184 ILYGHDDEVTCVDLNIELDICISGSKDGTCIIHNLRRGEYVRTISLPKQSPVSKCSI-SNQGHIVIYSQADLVIYLYSING-QLLKSVDTHERLHSIIISRDSEYLISGGDKGTVVLRTLYNLKFAHKLSF-DTPINSLAMGSDQKHLMVGLEDGRLLIIA 3341          
BLAST of EWM30546.1 vs. NCBI_GenBank
Match: gi|298705738|emb|CBJ49046.1| (similar to LPS-responsive vesicle trafficking, beach and anchor containing isoform 5 [Ectocarpus siliculosus])

HSP 1 Score: 106.301 bits (264), Expect = 2.319e-22
Identity = 65/192 (33.85%), Postives = 99/192 (51.56%), Query Frame = 0
Query:   79 VLVGHDTPVLSLAYSSHLDLCASGARDGSVVVHRVQKARFVRRLMY-----------PGRHPVDRLHLCAETGVLTMHSHADAGLAAFSLNGFPLARLPQGKERLSALLASKDGQFLLTGGEEGVLSVRQGHSLKLLHTLRVG-HGPITSLAFTPDHQYILVGCEDGSFSVVADPLSRLQMLHRVLSRTFFG 258
            VL GH+ P+  LA S  LD   SGA DG +V+H ++   +VR+                  P       +  G + +HS  D  L  +SLNG  LA        ++ LL +  G++LL GG++G++ V   H L +LHT+ +  HG +T +  +PDH+Y+L G +DG  S++ D   R++ML   L R F G
Sbjct: 1734 VLYGHEAPITCLAVSEDLDTVVSGASDGRIVLHCLKNGCYVRQYRCGTGSATATDAAEASTPEASQLAFSRHGDVVVHSWTDRSLHRYSLNGTRLA-TAVAPTTINCLLTAGGGEYLLAGGQDGLIRVHTLHDLCVLHTIDLQQHGGVTCMRMSPDHEYLLAGSQDGEVSIITDARKRMRMLDLALRRAFVG 1924          
BLAST of EWM30546.1 vs. NCBI_GenBank
Match: gi|470269251|ref|XP_004362470.1| (BEACH domain-containing protein [Dictyostelium fasciculatum] >gi|328876256|gb|EGG24619.1| BEACH domain-containing protein [Dictyostelium fasciculatum])

HSP 1 Score: 105.916 bits (263), Expect = 3.699e-22
Identity = 54/163 (33.13%), Postives = 100/163 (61.35%), Query Frame = 0
Query:   79 VLVGHDTPVLSLAYSSHLDLCASGARDGSVVVHRVQKARFVRRLMYPGRHPVDRLHLCAET--GVLTMHSHADAGLAAFSLNGFPLARLPQGKERLSALLASKDGQFLLTGGEEGVLSVRQGHSLKLLHTLRVGHGPITSLAFTPDHQYILVGCEDGSFSVVA 239
            +L GHD  +  +  +  LD+C SG++DG+ ++H ++   +VR ++ P + PV    +CA +  G + ++S AD  +  +S+NG  L  + +  ERL++++ +KD ++L+TGG++G + +R  ++LK  H L     PI SLA   D ++++VG EDG   ++A
Sbjct: 3387 ILYGHDDEITCVDVNVELDICLSGSKDGTCIIHNLRHGEYVRSIILPKQAPVT---ICAISNHGHIVIYSQADFVIYLYSINGQFLQSV-ETHERLNSIIITKDSEYLITGGDKGTVILRTLYNLKFAHKLSFDQ-PIHSLAMGSDQKHLMVGLEDGRLIIIA 3544          
BLAST of EWM30546.1 vs. NCBI_GenBank
Match: gi|330800468|ref|XP_003288258.1| (hypothetical protein DICPUDRAFT_14407 [Dictyostelium purpureum] >gi|325081714|gb|EGC35220.1| hypothetical protein DICPUDRAFT_14407, partial [Dictyostelium purpureum])

HSP 1 Score: 104.375 bits (259), Expect = 1.441e-21
Identity = 55/162 (33.95%), Postives = 97/162 (59.88%), Query Frame = 0
Query:   79 VLVGHDTPVLSLAYSSHLDLCASGARDGSVVVHRVQKARFVRRLMYPGRHPVDRLHLCAETGVLTMHSHADAGLAAFSLNGFPLARLPQGKERLSALLASKDGQFLLTGGEEGVLSVRQGHSLKLL-HTLRVGHGPITSLAFTPDHQYILVGCEDGSFSVVA 239
            +L GHD  +  +  +  LD+  SG++DG+ ++H ++   +VR +  P + P+  + + +  G + ++S AD  +  +S+NG  L +     ERL +++ SKD ++LLTGGE+GV+ +R  ++LK   H L  G  PI SLA   D ++++VG EDG   ++A
Sbjct: 2156 ILYGHDDEITCVDVNVGLDISISGSKDGTCIIHNLKHGEYVRSIYLPKQTPISLIAI-SNQGYIIIYSQADLTMYLYSING-QLLKTVYTHERLHSIIISKDSEYLLTGGEKGVVVIRTLYNLKQTPHKLVFG-TPIHSLAMASDQKHLMVGLEDGRLLIIA 2314          
BLAST of EWM30546.1 vs. NCBI_GenBank
Match: gi|166240454|ref|XP_640913.2| (BEACH domain-containing protein [Dictyostelium discoideum AX4] >gi|182662409|sp|Q54U63.2|LVSC_DICDI RecName: Full=BEACH domain-containing protein lvsC >gi|165988606|gb|EAL66782.2| BEACH domain-containing protein [Dictyostelium discoideum AX4])

HSP 1 Score: 102.064 bits (253), Expect = 8.832e-21
Identity = 52/161 (32.30%), Postives = 94/161 (58.39%), Query Frame = 0
Query:   79 VLVGHDTPVLSLAYSSHLDLCASGARDGSVVVHRVQKARFVRRLMYPGRHPVDRLHLCAETGVLTMHSHADAGLAAFSLNGFPLARLPQGKERLSALLASKDGQFLLTGGEEGVLSVRQGHSLKLLHTLRVGHGPITSLAFTPDHQYILVGCEDGSFSVVA 239
            +L GHD  +  +  +  LD+  SG++DG+ ++H ++   +VR +  P + P+  + + +  G + ++S AD  +  +S+NG  L +     ERL +++ SKD ++L+TGGE GV+ +R   +LK  +   V   PI SLA   D ++++VG EDG   ++A
Sbjct: 2308 ILYGHDDEITCVDVNVGLDISISGSKDGTCIIHNLKHGEYVRSIYLPRQSPISLIAI-SNQGYIVIYSQADLMIYLYSING-GLLKTVDTHERLHSIIISKDSEYLITGGERGVVVIRTLFNLKPTNHKLVFGTPIHSLAMASDQKHLMVGLEDGRLLIIA 2466          
BLAST of EWM30546.1 vs. NCBI_GenBank
Match: gi|302795720|ref|XP_002979623.1| (hypothetical protein SELMODRAFT_110788, partial [Selaginella moellendorffii] >gi|300152871|gb|EFJ19512.1| hypothetical protein SELMODRAFT_110788, partial [Selaginella moellendorffii])

HSP 1 Score: 101.679 bits (252), Expect = 1.041e-20
Identity = 58/161 (36.02%), Postives = 95/161 (59.01%), Query Frame = 0
Query:   79 VLVGHDTPVLSLAYSSHLDLCASGARDGSVVVHRVQKARFVRRLMYPGRHPVDRLHLCAETGVLTMHSHADAGLAAFSLNGFPLARLPQGKERLSALLASKDGQFLLTGGEEGVLSVRQGHSLKLLHTLRVGHGPITSLAFTPDHQYILVGCEDGSFSVVA 239
            VL GHD  V  +   + LDL  SG+ DG+ +++ +++ R+VR L++P R  +  L + +  G++ + S+ D    +FS+NG  LA   +   RLS +  S  G+F++ GG++G ++VR+ HSL+L+H       PI SL  TP+  + LVG  DG F + A
Sbjct: 2401 VLCGHDDAVTCVVVRTELDLVVSGSEDGTCILYTLRQGRYVRSLVHPSRKSISLL-VVSPHGLVGLFSNKDLNFHSFSVNGKHLAS-AELNGRLSCMELSSCGEFVVCGGDQGYVTVRKLHSLELVHRYDTAGSPIVSLCVTPEDCF-LVGTRDGRFLIYA 2558          
BLAST of EWM30546.1 vs. NCBI_GenBank
Match: gi|302791770|ref|XP_002977651.1| (hypothetical protein SELMODRAFT_107448, partial [Selaginella moellendorffii] >gi|300154354|gb|EFJ20989.1| hypothetical protein SELMODRAFT_107448, partial [Selaginella moellendorffii])

HSP 1 Score: 101.293 bits (251), Expect = 1.161e-20
Identity = 58/161 (36.02%), Postives = 95/161 (59.01%), Query Frame = 0
Query:   79 VLVGHDTPVLSLAYSSHLDLCASGARDGSVVVHRVQKARFVRRLMYPGRHPVDRLHLCAETGVLTMHSHADAGLAAFSLNGFPLARLPQGKERLSALLASKDGQFLLTGGEEGVLSVRQGHSLKLLHTLRVGHGPITSLAFTPDHQYILVGCEDGSFSVVA 239
            VL GHD  V  +   + LDL  SG+ DG+ +++ +++ R+VR L++P R  +  L + +  G++ + S+ D    +FS+NG  LA   +   RLS +  S  G+F++ GG++G ++VR+ HSL+L+H       PI SL  TP+  + LVG  DG F + A
Sbjct: 1048 VLCGHDDAVTCVVVRTELDLVVSGSEDGTCILYTLRQGRYVRSLVHPSRKSISLL-VVSPHGLVGLFSNKDLNFHSFSVNGKHLAS-AELNGRLSCMELSSCGEFVVCGGDQGYVTVRKLHSLELVHRYDAAGSPIVSLCVTPEDCF-LVGTRDGRFLIYA 1205          
BLAST of EWM30546.1 vs. NCBI_GenBank
Match: gi|831790109|ref|XP_012759282.1| (hypothetical protein SAMD00019534_003950 [Acytostelium subglobosum LB1] >gi|735859914|dbj|GAM17220.1| hypothetical protein SAMD00019534_003950 [Acytostelium subglobosum LB1])

HSP 1 Score: 100.523 bits (249), Expect = 2.873e-20
Identity = 56/162 (34.57%), Postives = 96/162 (59.26%), Query Frame = 0
Query:   79 VLVGHDTPVLSLAYSSHLDLCASGARDGSVVVHRVQKARFVRRLMYPGRHPVDRLHLC--AETGVLTMHSHADAGLAAFSLNGFPLARLPQGKERLSALLASKDGQFLLTGGEEGVLSVRQGHSLKLLHTLRVGHGPITSLAFTPDHQYILVGCEDGSFSVV 238
            +L GHD  +  +  +  LD+C SG++DGS ++H ++K  +VR +  P +  V    +C  +  G + ++S  D  +  +S+NG  L+ +    ERL +++ SKD ++L++GGE+G L VR  ++LK  H L +    ITSLA   D ++++VG EDG   +V
Sbjct: 3156 ILYGHDDEITCVDLNVELDICVSGSKDGSCIIHSLRKGEYVRTIYLPTQSSVS---ICCISNQGHIVIYSQDDLIIYLYSINGHLLSTV-NTHERLQSIIISKDSEYLISGGEKGTLVVRTLYNLKFAHKLTL-DTQITSLA--SDQRHLMVGMEDGRLLIV 3310          
The following BLAST results are available for this feature:
BLAST of EWM30546.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113213|gb|EWM30546.1|0.000e+0100.00beach domain-containing protein [Nannochloropsis g... [more]
gi|971510955|dbj|GAQ87254.1|6.537e-2340.24WD40 and Beach domain-containing protein [Klebsorm... [more]
gi|1160567495|ref|XP_020427426.1|1.893e-2232.30BEACH domain-containing protein [Polysphondylium p... [more]
gi|298705738|emb|CBJ49046.1|2.319e-2233.85similar to LPS-responsive vesicle trafficking, bea... [more]
gi|470269251|ref|XP_004362470.1|3.699e-2233.13BEACH domain-containing protein [Dictyostelium fas... [more]
gi|330800468|ref|XP_003288258.1|1.441e-2133.95hypothetical protein DICPUDRAFT_14407 [Dictyosteli... [more]
gi|166240454|ref|XP_640913.2|8.832e-2132.30BEACH domain-containing protein [Dictyostelium dis... [more]
gi|302795720|ref|XP_002979623.1|1.041e-2036.02hypothetical protein SELMODRAFT_110788, partial [S... [more]
gi|302791770|ref|XP_002977651.1|1.161e-2036.02hypothetical protein SELMODRAFT_107448, partial [S... [more]
gi|831790109|ref|XP_012759282.1|2.873e-2034.57hypothetical protein SAMD00019534_003950 [Acytoste... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna77rna77Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications