rna7694, rna7694 (mRNA) Nannochloropsis gaditana

Overview
Namerna7694
Unique Namerna7694
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length288
Alignment locationCM002473.1:103012..103527 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101650g1.5900.mrna
Orig protein idgnl|cribi|Naga_101650g1.5900
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:103012..103527 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101650g1gene7448Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7694rna7694-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23001.1cds7673Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7694 ID=rna7694|Name=rna7694|organism=Nannochloropsis gaditana|type=mRNA|length=288bp
ATGTGTGCAGTAGCGCCTCGTCTCTCCCCGCCCCCTTCCCTTCCCCTGCA
TCCGGAAAAGGAAAAAGGAAACCGAAATGCACGTTGTCAACCTGCACGCC
AGCGACGCGCAGTAAAAATATCGATCCGTACAACTGCACCCTCTGCTATG
CCTGTCCATGTGAAGCGTAAAGCCATTGTCCAGCTTCGGCTGAGCACGCA
GGCAGCAGAGCGCTTGGAAGGGTTGATAAAGGAGGGTTTAACGGAGGACC
TTGTCGCAGTCGTGGGGCCCGACGGAGGTGAGTGTTGA
back to top

protein sequence of rna7694

>rna7694-protein ID=rna7694-protein|Name=rna7694|organism=Nannochloropsis gaditana|type=polypeptide|length=171bp
MPRVSDASSSSPSRPVKPSCRDPPRPSDRPRGNALHTPGRSQSGDPPPLK
RGRQASIQDAFASTPAFNPEFSQPVATFPEKGEVIDVEAEGLMEGEGGKE
GDLMPPETQKTPAKVPETRATRKSGVEGEDWQQKGKRTDKMKAAVEVVEE
EEEGPEEGGRFVPIHLHKVSA
back to top

mRNA from alignment at CM002473.1:103012..103527+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7694 ID=rna7694|Name=rna7694|organism=Nannochloropsis gaditana|type=mRNA|length=516bp|location=Sequence derived from alignment at CM002473.1:103012..103527+ (Nannochloropsis gaditana)
ATGCCTCGCGTGTCCGACgcttcttcatcttccccttctcgcccCGTCAA
ACCCTCTTGTCGGGAcccgccacgcccttccGACCGCCCCAGGGGCAATG
CCCTTCACACCCCAGGCCGAAGCCAATCAggggaccccccccccctgaaA
CGGGGCCGTCAAGCCTCCATACAGGATGCCTTTGCGTCCACCCCTGCTTT
CAACCCCGAATTCTCGCAGCCCGTGGCCACCTTCCCAGAAAAAGGCGAAG
TGATCGAcgtggaagcggaggggctcatggagggagaaggaggcaaggag
ggagatctCATGCCACCCGAGACACAAAAGACGCCGGCGAAAGTGCCAGA
GACGCGGGCTACGAGAAAgtcgggcgtggagggggaggactgGCAGCAGA
AAGGGAAGCGGACAGACAAGATGAAGGCGGcagtggaggtggtggaggag
gaagaggaaggcccagaggagggagggaggtttgtACCAATCCACTTGCA
CAAGGTAAGTGCCTAG
back to top

Coding sequence (CDS) from alignment at CM002473.1:103012..103527+

>rna7694 ID=rna7694|Name=rna7694|organism=Nannochloropsis gaditana|type=CDS|length=516bp|location=Sequence derived from alignment at CM002473.1:103012..103527+ (Nannochloropsis gaditana)
ATGCCTCGCGTGTCCGACgcttcttcatcttccccttctcgcccCGTCAA
ACCCTCTTGTCGGGAcccgccacgcccttccGACCGCCCCAGGGGCAATG
CCCTTCACACCCCAGGCCGAAGCCAATCAggggaccccccccccctgaaA
CGGGGCCGTCAAGCCTCCATACAGGATGCCTTTGCGTCCACCCCTGCTTT
CAACCCCGAATTCTCGCAGCCCGTGGCCACCTTCCCAGAAAAAGGCGAAG
TGATCGAcgtggaagcggaggggctcatggagggagaaggaggcaaggag
ggagatctCATGCCACCCGAGACACAAAAGACGCCGGCGAAAGTGCCAGA
GACGCGGGCTACGAGAAAgtcgggcgtggagggggaggactgGCAGCAGA
AAGGGAAGCGGACAGACAAGATGAAGGCGGcagtggaggtggtggaggag
gaagaggaaggcccagaggagggagggaggtttgtACCAATCCACTTGCA
CAAGGTAAGTGCCTAG
back to top
Synonyms
Publications