rna7691, rna7691 (mRNA) Nannochloropsis gaditana

Overview
Namerna7691
Unique Namerna7691
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1139
Alignment locationCM002473.1:71458..72647 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101381g1.7401.mrna
Orig protein idgnl|cribi|Naga_101381g1.7401
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:71458..72647 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101381g1gene7445Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23003.1cds7670Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7691rna7691-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7691 ID=rna7691|Name=rna7691|organism=Nannochloropsis gaditana|type=mRNA|length=1139bp
CCTCCTCCTCCTCCTCCTCCTCCTCTCTCCGCCTCCTCCCCCCTTTCCTC
CCTCCTTCCCTCCTTCCCTCTCCCATGCCTTTCCTCCTTCCCGCTTCAAC
CACGTTCTCTCTTCATTCGATTCTTCCTCCTCTCCCCGCACTGTGCTTTT
AACATTGCATATGCCACCTTCTGTTCCTTCCCTCCCTCCCTCCCTTTCTC
AGATGCACCGTTCGCAGGCCCTCCACCAGGAGCTCTTACAGGCCAAGATA
CAACTTCAACGAGAGCATGCGATCAAGCAGCGGCTGGAGGAGGAGCTGGA
GGCCTTGGGCGGTCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CTTCCCACCCTCGCTCCCCACCCCTCCACGAGCAAGTGATGGACAAGGAG
GGATCTTACCAACACGTGGCTCTCGTCAGGCGCCCCCATCCCCAACAGCT
CCAGCAGCAGCCTCTGCCACCTTCATCCTCGAGGCAGGGAGGGAGGGAGG
GAGGGAGGGAGGGCAGGCCAGGGTACGCCCCGCTCTCCCCTTTGCCTTCC
TCCTCAAATCGCGTTCGTTTCGCGTCATCATCCCCAATCCCTCTTCGGCG
GTGAGGGCAGGGAAGCCGTAGCTCTACCTGAAACGGTCAATTATTTTTAA
TTTCCGTTTCGTTGCCAGGGGGAAAAAGTGCCGAATATTCCCGAGATACA
TGTGGGCTGGGGACTCCGTCGATGCGTCGTGCCACCGTGCACTGCCGGGG
AGGAAAATGTATTTACGGCAAGAAAAAGGATTATGTCGAGGGGCCTTGCG
TACGATGTCAAAAAAGAAAAAGAGACCGTCTTGTAAAGGGAGGGCTTGGA
TAATGGGGTGAAAGCAAAAGAAGGTCACGTGGTAAGCTGCATCGGGAGAC
GAAACGGACGGTGGGGCATGGGACAATCTCAGGGCGGGGGAGGGCGAGGA
AGAAGCGGAGGCGGTGGGGGAGACACGAGAAAGGGATGCCAGGCTACGGA
TTATGGTTTATATGTACGTATGGCAGTTGTAATTGATTGCTTTTTTTTCG
GTCGACGATACGAATATAAAAGAAGCCGGTATCATTTGTTTGGGGCAGTC
ACACTGGCCAATAAAGAATTTATCTCGAGGAGCCATGCT
back to top

protein sequence of rna7691

>rna7691-protein ID=rna7691-protein|Name=rna7691|organism=Nannochloropsis gaditana|type=polypeptide|length=260bp
MRPKPPTSSGTSTLSSQPSPAGLPPPVIAPEENSSLHMGHRAAPSLPLHD
ASSCSGSNAISRDRLKAFNETNLLREKEVQPGAASSSRPSPFPSSSSSSS
SSSSFIFSSSSTSSPERGGSLDHPQPSGPEMEGKGHVGREREITRVVELM
ASEGGRNNHERGGEGDRIHARKTEAMRKGGAPAPYPPFPPLTRQGGREGG
GEGRREEEVAMACSVALPSSYFLPPSRRERREKVMKESAKVRWEGGRADR
RDGKGEGKER
back to top

mRNA from alignment at CM002473.1:71458..72647-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7691 ID=rna7691|Name=rna7691|organism=Nannochloropsis gaditana|type=mRNA|length=1190bp|location=Sequence derived from alignment at CM002473.1:71458..72647- (Nannochloropsis gaditana)
CAACCATAAAGCCACTGAAACCACGCAAACAAGATCTTGAGGATCCCACA
TTCCTTCCAGATTCTTAAATATTAAGTTCCTGACCGAATGCCTCCCTGAT
GGCTGGTTTTGAAAGCTGTTTACGGTCCTTTTGTGCACTCAATCAAATCA
GAGCACTTGCCCCTCCGACGCACTCAGACCGATACCCCGCCCTCCTGAAT
AACATCTGCGATCTATCCAAACACATAGACCCTCGACGCACACAATCTTC
GTCTTCCGCAGCGTCACTTTTCCGTCGACGCGGACCAGGTAGTGATATTT
GCGATATCTCCCATGACGGCGGATTCTTTTCTCATTTATTTATCGCAGAC
TTTCTCTCCCTCCCTCCCTCTTTCTTTTCCCTCAATCCCTTCCCTGCAAA
TCAAAGCATGCGTCCGAAACCTCCTACGTCTTCAGGGACGTCTACCCTCT
CCTCCCAGCCGTCTCCTGCCGGCCTCCCTCCCCCTGTCATTGCCCCTGAG
GAGAACAGCTCCCTGCATATGGGCCACCGCGCCGCTCCCTCCCTTCCTCT
TCACGACGCCAGCTCATGCTCCGGCAGCAATGCAATCAGCAGAGACCGTT
TAAAGGCATTCAATGAGACGAATCTCCTCCGCGAGAAGGAGGTACAGCCA
GGGGCCGCGTCCTCCTCCCGCCCTTCCCCCTTCCCGTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTTCATATTCTCCTCCTCCTCCACCTCCTCGC
CCGAACGAGGTGGCTCCCTCGACCATCCCCAGCCGTCAGGACCAGAAATG
GAAGGCAAAGGACACGTGGGGAGGGAAAGAGAAATAACCAGGGTGGTGGA
GTTGATGGCGTCCGAAGGAGGAAGGAATAACCATGAAAGAGGAGGGGAAG
GTGATAGAATCCATGCAAGGAAGACAGAGGCAATGAGGAAGGGTGGGGCG
CCAGCCCCGTACCCTCCTTTCCCCCCGTTGACAAGGCAGGGCGGAAGGGA
GGGCGGGGGGGAGGGAAGGAGGGAGGAGGAGGTTGCGATGGCGTGTTCGG
TTGCATTGCCATCCTCGTATTTCTTGCCCCCCTCCCGGAGGGAGCGCCGC
GAGAAAGTGATGAAAGAGTCGGCGAAGGTACGGTGGGAGGGAGGGAGGGC
GGACAGGAGGGATGGGAAGGGAGAAGGGAAGGAGAGATGA
back to top

Coding sequence (CDS) from alignment at CM002473.1:71458..72647-

>rna7691 ID=rna7691|Name=rna7691|organism=Nannochloropsis gaditana|type=CDS|length=783bp|location=Sequence derived from alignment at CM002473.1:71458..72647- (Nannochloropsis gaditana)
ATGCGTCCGAAACCTCCTACGTCTTCAGGGACGTCTACCCTCTCCTCCCA
GCCGTCTCCTGCCGGCCTCCCTCCCCCTGTCATTGCCCCTGAGGAGAACA
GCTCCCTGCATATGGGCCACCGCGCCGCTCCCTCCCTTCCTCTTCACGAC
GCCAGCTCATGCTCCGGCAGCAATGCAATCAGCAGAGACCGTTTAAAGGC
ATTCAATGAGACGAATCTCCTCCGCGAGAAGGAGGTACAGCCAGGGGCCG
CGTCCTCCTCCCGCCCTTCCCCCTTCCCGTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTTCATATTCTCCTCCTCCTCCACCTCCTCGCCCGAACG
AGGTGGCTCCCTCGACCATCCCCAGCCGTCAGGACCAGAAATGGAAGGCA
AAGGACACGTGGGGAGGGAAAGAGAAATAACCAGGGTGGTGGAGTTGATG
GCGTCCGAAGGAGGAAGGAATAACCATGAAAGAGGAGGGGAAGGTGATAG
AATCCATGCAAGGAAGACAGAGGCAATGAGGAAGGGTGGGGCGCCAGCCC
CGTACCCTCCTTTCCCCCCGTTGACAAGGCAGGGCGGAAGGGAGGGCGGG
GGGGAGGGAAGGAGGGAGGAGGAGGTTGCGATGGCGTGTTCGGTTGCATT
GCCATCCTCGTATTTCTTGCCCCCCTCCCGGAGGGAGCGCCGCGAGAAAG
TGATGAAAGAGTCGGCGAAGGTACGGTGGGAGGGAGGGAGGGCGGACAGG
AGGGATGGGAAGGGAGAAGGGAAGGAGAGATGA
back to top
Synonyms
Publications