rna7687, rna7687 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7687
Unique Name	rna7687
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1676
Alignment location	CM002473.1:66351..68630 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100905g3.4526.mrna
Orig protein id	gnl\|cribi\|Naga_100905g3.4526
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002473.1	supercontig	CM002473.1:66351..68630 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100905g3	gene7441	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7687	rna7687-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23006.1	cds7667	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002473.1:66351..68630+
coding sequence from alignment at CM002473.1:66351..68630+

mRNA sequence

>rna7687 ID=rna7687|Name=rna7687|organism=Nannochloropsis gaditana|type=mRNA|length=1676bp
TCCCTCAGCTGTTCTACCGCGCTCTGTCTTGTTGTCCCTCCTCTCAAAGC
CTATGGCTCGACTCCTGCTTATCCCTCCGCCGACTCTTTACCCCAGAGGA
GAAGGAGGAGATGAGGAGGGGCATGGAGCGAAAAGGTTTCATCATGAGGG
TGGCGGATTGAGGAGCAGAGGGTGTGGTGGAAGGTTGAAAGGCAAAAGGA
GAAGAGAGAGGAGGATCGTGATGTGAAGCGAAGGGGCAAGGATGCACGAA
AAAAAATGGAAATAGGCCGGCGCGCACGAGCTTTTGGCTTGTGAAGGCAA
TAAAAGCACATCCGTATATCGTATTATAGGTATAATGTAAAAATTTAGCA
TACTTCTTTTACTTTCCACCGTGTTGTCGTAGGAGTGCCCCGCTGGCTTC
TTCATGGGCCCGTGTCAGGCGATTATTTCCGACTTGCTTGGCACTTTTAT
GGACGGATACCGATACACGCCACGTCTCTCGATAATCTTTATCCCGGTAC
ATTAAACTAGAATGCAGCACATATGTTTCATTGAGTGATCTATAAGTACA
CCAACTGACAGGTACAATCTAACGGAAGTGACGGAGACAAAGACAATGGC
GGAAGCTCGCGATTTTACTACAACTGCCCGCTCAAGCCAAGGGAAGAGGA
AAGCCCCCGGCGGCAACGCAACAGGGGAGGTTGTGGGGAGAGAGGAATCG
TACAACACCATCACACCGCCATCAGATGGCATGAAAGATGGAGGGGATGC
CAGTGAGGCCACATGTACAGGACAACCGGAAAAATTAGTTGACGCCACGG
AGACTGTGACGCCCATTTTTCCAGAAGCAGGGTCCGAGGAAGCAGCATCG
CCTCCAACGACGGATGAAGAGCATGTGCCAATACCAACGGTGCTACAAGC
ATTGGAATGCATGTCAAAGCCGGATCTACCACCTCAACCCATGAGCACGT
GCGTGAAGGAGCTGTATGACTACATACAAGAGCAGGATGAAGACCCGCGC
CAAGATCTTTACGAGGAAATGATGGGAATGGATGCGGAGGCCCTTGCCCG
GCGGATGGACGATTTGCGAGCCCTCGCCTCGGAGCTTCAATGCAAGGAAG
GTGAGTACCGGGAAACTAATCGGGTCTTACGAACACTTTGCTGGAAGGGG
GTGTTGAAGAGATATCCTGGCATCATATGGTTTGAGGAATAAAATAGGCG
ACGGACGACGTTATGTGTGTATGTATGCCACCGGGCAACGGTCGAAAAAA
AATGCGCGAAATAAATTGCGGTTCGCGGAAAAACCAAACAAATAATCCAA
CACGTTGGAGCCGGAGGAGACGCGGCAAGGAAGGTAGTTTTGGGTACCGC
GATGCGTTATACTTGAAAAAGGTGCCAGCATCAGACAGAGTCGAAAGAAG
AGGAGGGGTACCTGGACTCGCGCGGCCTGTCTCTGGGTGACTGTGAAAGT
TACGCTCAATGAAGGCCTACCGAGGTCCCTGGTTTTCTTCCCTGCCTCTA
GGGTGGGAGGGAAACGAATGACTGATACAAGCGTCCTTCTCTTCTTCTTT
CTTTTCTTTTTCCCCAGAAAGAGTGCTGGAGAAGCTAAGGAACGGCCCGG
TCTTCAAGACGGAATGAGGGCTTATAATGCTCTTCATCTATGTAGGGGAA
AGGAAAAGAACAAAAAAGCGAGTATG

protein sequence of rna7687

>rna7687-protein ID=rna7687-protein|Name=rna7687|organism=Nannochloropsis gaditana|type=polypeptide|length=184bp
MAEARDFTTTARSSQGKRKAPGGNATGEVVGREESYNTITPPSDGMKDGG
DASEATCTGQPEKLVDATETVTPIFPEAGSEEAASPPTTDEEHVPIPTVL
QALECMSKPDLPPQPMSTCVKELYDYIQEQDEDPRQDLYEEMMGMDAEAL
ARRMDDLRALASELQCKEERVLEKLRNGPVFKTE

mRNA from alignment at CM002473.1:66351..68630+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7687 ID=rna7687|Name=rna7687|organism=Nannochloropsis gaditana|type=mRNA|length=2280bp|location=Sequence derived from alignment at CM002473.1:66351..68630+ (Nannochloropsis gaditana)
tccctcagctgTTCTACCGCGCTCTGTCTTGttgtccctcctctcaaAGC
CTATGGCTCGACTCCTGCTTATCCCTCCGCCGACTCTTTACcccagagga
gaaggaggagatgaggaggggcatggagcGAAAAGGTTTCATCATGAGGG
TGGCGGATTGAGGAGCAGAGGGTGTGGTGGAAGGTTGAAAggcaaaagga
gaagagagaggaggatcgTGATGTGAAGCGAAGGGGCAAGGATGcacgaa
aaaaaatggaaataGGCCGGCGCGCACGAGCTTTTGGCTTGTGAAGGCAA
TAAAAGCACATCCGTATATCGTATTATAGGTATAATGTAAAAATTTAGCA
TACTTCTTTTACTTTCCACCGTGTTGTCGTAGGAGTGCCCCGCTGGCTTC
TTCATGGGCCCGTGTCAGGCGATTATTTCCGACTTGCTTGGCACTTTTAT
GGACGGATACCGATACACGCCACGTCTCTCGATAATCTTTATCCCGGTAC
ATTAAACTAGAATGCAGCACATATGTTTCATTGAGTGATCTATAAGGTAA
CAAGCCGAAGGACAGGTCGTGGTGGGGGAATGAACCTCCTCGCACTCCGT
ATCAAGCCCGAGAGTGGGGAAAGCTTTGCATGTACATTCCCCATCCTCAA
GCATCCATTGCCCCCGCGTGCGTCGTAAAGTACACCAACTGACAGGTACA
ATCTAACGGAAGTGACGGAGACAAAGACAATGGCGGAAGCTCGCGATTTT
ACTACAACTGCCCGCTCAAgccaagggaagaggaaagcccCCGGCGGCAA
CGCAACAGGGGAGGTtgtggggagagaggaatcGTACAACACCATCACAC
CGCCATCAGATGGCATgaaagatggaggggatGCCAGTGAGGCCACATGT
ACAGGACAACCGGAAAAATTAGTTGACGCCACGGAGACTGTGACGCCCAT
TTTTCCAGAAGCAGGGTCCGAGGAAGCAGCATCGCCTCCAACGACGGATG
AAGAGCATGTGCCAATACCAACGGTGCTACAAGCATTGGAATGCATGTCA
AAGGTAAGCAAATAGGTCGTGGATCCCTGCGGTCGTGATGCTTTAATTTG
CAACACTATTGTTACTGACTTCCGCAATACTTTCTATGGTCCATGCGCGT
TTCCTTGTCCTTAAGCCGGATCTACCACCTCAACCCATGAGCACGTGCGT
GAAGGAGCTGTATGACTACATACAAGAGCAGGATGAAGACCCGCGCCAAG
ATCTTTACGAGGGtaagaggcgggagggagggagggagagaggaaaggag
ggagggagagagggaggaagggagggagggagggaagggatggaaatagg
aggaagggtgtgTGTTTTATCGAAGTTCTCGAGATTTTGTCGAGAGTTGT
TGTCGTTTAATTGAATGAATGGATACAAAGCCTTGGTTGTGTTTTGGAAG
TGATGGATGCTTCCTTCTCACGAGAGCTCTCCCAGCGGTTGGGTCATGCG
ATGCCCGTACCAGGGAATGGGATAGATTTTTCCTCGAAATTTCGCAGCCG
GTTGTGACATACTCCATCCCTCATGCATCTGCTTCTTTCTCATGGTGGGA
ATTCGGGGCATGACCTTCAGAAATGATGGGAATGGATGCGGAGGCCCTTG
CCCGGCGGATGGACGATTTGCGAGCCCTCGCCTCGGAGCTTCAATGCAAG
GAAGGTGAGTACCGGGAAACTAATCGGGTCTTACGAACACTTTGCTGGAA
GGGGGTGTTGAAGAGATATCCTGGCATCATATGGTTTGAGGAATAAAATA
GGCGACGGACGACGTTATGTGTGTATGTATGCCACCGGGCAACGGTcgaa
aaaaaatgcgcgaaatAAATTGCGGTTCGCGGAAAAACCAAACAAATAAT
CCAACACGttggagccggaggagacGCGGCAAGGAAGGTAGTTTTGGGTA
CCGCGATGCGTTATACTTGAAAAAGGTGCCAGCATCAGACAGAGtcgaaa
gaagaggaggggtaCCTGGACTCGCGCGGCCTGTCTCTGGGTGACTGTGA
AAGTTACGCTCAATGAAGGCCTACCGAGGTCCCTGGttttcttccctgcc
tctagggtgggagggaaacgaaTGACTGATACAagcgtccttctcttctt
ctttcttttctttttccccagAAAGAGTGCTGGAGAAGCTAAGGAACGGC
CCGGTCTTCAAGACGGAATGAGGGCTTATAATGCTCTTCATCTATgtagg
ggaaaggaaaagaacaAAAAAGCGAGTATG

Coding sequence (CDS) from alignment at CM002473.1:66351..68630+

>rna7687 ID=rna7687|Name=rna7687|organism=Nannochloropsis gaditana|type=CDS|length=2220bp|location=Sequence derived from alignment at CM002473.1:66351..68630+ (Nannochloropsis gaditana)
ATGGCGGAAGCTCGCGATTTTACTACAACTGCCCGCTCAAgccaagggaa
gaggaaagcccCCGGCGGCAACGCAACAGGGGAGGTtgtggggagagagg
aatcGTACAACACCATCACACCGCCATCAGATGGCATgaaagatggaggg
gatGCCAGTGAGGCCACATGTACAGGACAACCGGAAAAATTAGTTGACGC
CACGGAGACTGTGACGCCCATTTTTCCAGAAGCAGGGTCCGAGGAAGCAG
CATCGCCTCCAACGACGGATGAAGAGCATGTGCCAATACCAACGGTGCTA
CAAGCATTGGAATGCATGTCAAAGCCGGATCTACCACCTCAACCCATGAG
CACGTGCGTGAAGGAGCTGTATGACTACATACAAGAGCAGGATGAAGACC
CGCGCCAAGATCTTTACGAGGAAATGATGGGAATGGATGCGGAGGCCCTT
GCCCGGCGGATGGACGATTTGCGAGCCCTCGCCTCGGAGCTTCAATGCAA
GGAAGAAAGAGTGCTGGAGAAGCTAAGGAACGGCCCGGTCTTCAAGACGG
AATGAATGGCGGAAGCTCGCGATTTTACTACAACTGCCCGCTCAAgccaa
gggaagaggaaagcccCCGGCGGCAACGCAACAGGGGAGGTtgtggggag
agaggaatcGTACAACACCATCACACCGCCATCAGATGGCATgaaagatg
gaggggatGCCAGTGAGGCCACATGTACAGGACAACCGGAAAAATTAGTT
GACGCCACGGAGACTGTGACGCCCATTTTTCCAGAAGCAGGGTCCGAGGA
AGCAGCATCGCCTCCAACGACGGATGAAGAGCATGTGCCAATACCAACGG
TGCTACAAGCATTGGAATGCATGTCAAAGCCGGATCTACCACCTCAACCC
ATGAGCACGTGCGTGAAGGAGCTGTATGACTACATACAAGAGCAGGATGA
AGACCCGCGCCAAGATCTTTACGAGGAAATGATGGGAATGGATGCGGAGG
CCCTTGCCCGGCGGATGGACGATTTGCGAGCCCTCGCCTCGGAGCTTCAA
TGCAAGGAAGAAAGAGTGCTGGAGAAGCTAAGGAACGGCCCGGTCTTCAA
GACGGAATGAATGGCGGAAGCTCGCGATTTTACTACAACTGCCCGCTCAA
gccaagggaagaggaaagcccCCGGCGGCAACGCAACAGGGGAGGTtgtg
gggagagaggaatcGTACAACACCATCACACCGCCATCAGATGGCATgaa
agatggaggggatGCCAGTGAGGCCACATGTACAGGACAACCGGAAAAAT
TAGTTGACGCCACGGAGACTGTGACGCCCATTTTTCCAGAAGCAGGGTCC
GAGGAAGCAGCATCGCCTCCAACGACGGATGAAGAGCATGTGCCAATACC
AACGGTGCTACAAGCATTGGAATGCATGTCAAAGCCGGATCTACCACCTC
AACCCATGAGCACGTGCGTGAAGGAGCTGTATGACTACATACAAGAGCAG
GATGAAGACCCGCGCCAAGATCTTTACGAGGAAATGATGGGAATGGATGC
GGAGGCCCTTGCCCGGCGGATGGACGATTTGCGAGCCCTCGCCTCGGAGC
TTCAATGCAAGGAAGAAAGAGTGCTGGAGAAGCTAAGGAACGGCCCGGTC
TTCAAGACGGAATGAATGGCGGAAGCTCGCGATTTTACTACAACTGCCCG
CTCAAgccaagggaagaggaaagcccCCGGCGGCAACGCAACAGGGGAGG
TtgtggggagagaggaatcGTACAACACCATCACACCGCCATCAGATGGC
ATgaaagatggaggggatGCCAGTGAGGCCACATGTACAGGACAACCGGA
AAAATTAGTTGACGCCACGGAGACTGTGACGCCCATTTTTCCAGAAGCAG
GGTCCGAGGAAGCAGCATCGCCTCCAACGACGGATGAAGAGCATGTGCCA
ATACCAACGGTGCTACAAGCATTGGAATGCATGTCAAAGCCGGATCTACC
ACCTCAACCCATGAGCACGTGCGTGAAGGAGCTGTATGACTACATACAAG
AGCAGGATGAAGACCCGCGCCAAGATCTTTACGAGGAAATGATGGGAATG
GATGCGGAGGCCCTTGCCCGGCGGATGGACGATTTGCGAGCCCTCGCCTC
GGAGCTTCAATGCAAGGAAGAAAGAGTGCTGGAGAAGCTAAGGAACGGCC
CGGTCTTCAAGACGGAATGA

Synonyms

Publications