EWM23006.1, cds7667 (CDS) Nannochloropsis gaditana

Overview
NameEWM23006.1
Unique Namecds7667
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002473.1:67080..67403 +
Alignment locationCM002473.1:67516..67612 +
Alignment locationCM002473.1:67971..68054 +
Alignment locationCM002473.1:68522..68571 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23006.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100905g3.4526.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:67080..67403 +
CM002473.1supercontigCM002473.1:67516..67612 +
CM002473.1supercontigCM002473.1:67971..68054 +
CM002473.1supercontigCM002473.1:68522..68571 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM23006.1 vs. NCBI_GenBank
Match: gi|585103780|gb|EWM23006.1| (hypothetical protein Naga_100905g3 [Nannochloropsis gaditana])

HSP 1 Score: 374.4 bits (960), Expect = 2.625e-131
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0 
Query:    1 MAEARDFTTTARSSQGKRKAPGGNATGEVVGREESYNTITPPSDGMKDGGDASEATCTGQPEKLVDATETVTPIFPEAGSEEAASPPTTDEEHVPIPTVLQALECMSKPDLPPQPMSTCVKELYDYIQEQDEDPRQDLYEEMMGMDAEALARRMDDLRALASELQCKEERVLEKLRNGPVFKTE 184
            MAEARDFTTTARSSQGKRKAPGGNATGEVVGREESYNTITPPSDGMKDGGDASEATCTGQPEKLVDATETVTPIFPEAGSEEAASPPTTDEEHVPIPTVLQALECMSKPDLPPQPMSTCVKELYDYIQEQDEDPRQDLYEEMMGMDAEALARRMDDLRALASELQCKEERVLEKLRNGPVFKTE
Sbjct:    1 MAEARDFTTTARSSQGKRKAPGGNATGEVVGREESYNTITPPSDGMKDGGDASEATCTGQPEKLVDATETVTPIFPEAGSEEAASPPTTDEEHVPIPTVLQALECMSKPDLPPQPMSTCVKELYDYIQEQDEDPRQDLYEEMMGMDAEALARRMDDLRALASELQCKEERVLEKLRNGPVFKTE 184
[Close]
BLAST of EWM23006.1 vs. NCBI_GenBank
Match: gi|553177713|ref|XP_005852490.1| (hypothetical protein NGA_0696800 [Nannochloropsis gaditana CCMP526] >gi|422296043|gb|EKU23342.1| hypothetical protein NGA_0696800 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 363.229 bits (931), Expect = 6.794e-127
Identity = 179/184 (97.28%), Postives = 182/184 (98.91%), Query Frame = 0 
Query:    1 MAEARDFTTTARSSQGKRKAPGGNATGEVVGREESYNTITPPSDGMKDGGDASEATCTGQPEKLVDATETVTPIFPEAGSEEAASPPTTDEEHVPIPTVLQALECMSKPDLPPQPMSTCVKELYDYIQEQDEDPRQDLYEEMMGMDAEALARRMDDLRALASELQCKEERVLEKLRNGPVFKTE 184
            MAEARDFTTTARSSQGKRKAPGGNATGEVVGREESYNTITPPSDGMK+GGDASEATCTGQPEKLVDATETVTPIFP AGSEEAASPPTTDEEHVPIPTVLQALECMSKPDLPP+PMSTCVKEL+DYIQEQDEDPRQDLYEEMMGMDAEALARRMDDLRALASELQ KEERVLEKLRNGPVFKTE
Sbjct:    1 MAEARDFTTTARSSQGKRKAPGGNATGEVVGREESYNTITPPSDGMKEGGDASEATCTGQPEKLVDATETVTPIFPGAGSEEAASPPTTDEEHVPIPTVLQALECMSKPDLPPKPMSTCVKELFDYIQEQDEDPRQDLYEEMMGMDAEALARRMDDLRALASELQRKEERVLEKLRNGPVFKTE 184
[Close]
BLAST of EWM23006.1 vs. NCBI_GenBank
Match: gi|585103782|gb|EWM23008.1| (hypothetical protein Naga_100905g3 [Nannochloropsis gaditana])

HSP 1 Score: 343.199 bits (879), Expect = 1.019e-118
Identity = 174/188 (92.55%), Postives = 174/188 (92.55%), Query Frame = 0 
Query:    1 MAEARDFTTTARSSQGKRKAPGGNATGEVVGREESYNTITPPSDGMKDGGDASEATCTGQPEKLVDATETVTPIFPEAGSEEAASPPTTDEEHVPIPTVLQALECMSKPDLPPQPMSTCVKELYDYIQEQDEDPRQDLYEEMMGMDAEALARRMDDLRALASELQCKE------ERVLEKLRNGPVFK 182
            MAEARDFTTTARSSQGKRKAPGGNATGEVVGREESYNTITPPSDGMKDGGDASEATCTGQPEKLVDATETVTPIFPEAGSEEAASPPTTDEEHVPIPTVLQALECMSKPDLPPQPMSTCVKELYDYIQEQDEDPRQDLYEEMMGMDAEALARRMDDLRALASELQCKE       RVL  L    V K
Sbjct:    1 MAEARDFTTTARSSQGKRKAPGGNATGEVVGREESYNTITPPSDGMKDGGDASEATCTGQPEKLVDATETVTPIFPEAGSEEAASPPTTDEEHVPIPTVLQALECMSKPDLPPQPMSTCVKELYDYIQEQDEDPRQDLYEEMMGMDAEALARRMDDLRALASELQCKEGEYRETNRVLRTLCWKGVLK 188
[Close]
BLAST of EWM23006.1 vs. NCBI_GenBank
Match: gi|585103781|gb|EWM23007.1| (hypothetical protein Naga_100905g3 [Nannochloropsis gaditana] >gi|585103783|gb|EWM23009.1| hypothetical protein Naga_100905g3 [Nannochloropsis gaditana])

HSP 1 Score: 286.574 bits (732), Expect = 2.069e-96
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0 
Query:    1 MAEARDFTTTARSSQGKRKAPGGNATGEVVGREESYNTITPPSDGMKDGGDASEATCTGQPEKLVDATETVTPIFPEAGSEEAASPPTTDEEHVPIPTVLQALECMSKPDLPPQPMSTCVKELYDYIQEQDEDPRQDLYE 140
            MAEARDFTTTARSSQGKRKAPGGNATGEVVGREESYNTITPPSDGMKDGGDASEATCTGQPEKLVDATETVTPIFPEAGSEEAASPPTTDEEHVPIPTVLQALECMSKPDLPPQPMSTCVKELYDYIQEQDEDPRQDLYE
Sbjct:    1 MAEARDFTTTARSSQGKRKAPGGNATGEVVGREESYNTITPPSDGMKDGGDASEATCTGQPEKLVDATETVTPIFPEAGSEEAASPPTTDEEHVPIPTVLQALECMSKPDLPPQPMSTCVKELYDYIQEQDEDPRQDLYE 140
The following BLAST results are available for this feature:
BLAST of EWM23006.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585103780|gb|EWM23006.1|2.625e-131100.00hypothetical protein Naga_100905g3 [Nannochloropsi... [more]
gi|553177713|ref|XP_005852490.1|6.794e-12797.28hypothetical protein NGA_0696800 [Nannochloropsis ... [more]
gi|585103782|gb|EWM23008.1|1.019e-11892.55hypothetical protein Naga_100905g3 [Nannochloropsi... [more]
gi|585103781|gb|EWM23007.1|2.069e-96100.00hypothetical protein Naga_100905g3 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7687rna7687Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications