rna7686, rna7686 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7686
Unique Name	rna7686
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1569
Alignment location	CM002473.1:66351..68630 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100905g3.4528.mrna
Orig protein id	gnl\|cribi\|Naga_100905g3.4528
Gbkey	mRNA
Note	encoded by transcript variant 3; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002473.1	supercontig	CM002473.1:66351..68630 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100905g3	gene7441	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7686	rna7686-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23008.1	cds7666	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002473.1:66351..68630+
coding sequence from alignment at CM002473.1:66351..68630+

mRNA sequence

>rna7686 ID=rna7686|Name=rna7686|organism=Nannochloropsis gaditana|type=mRNA|length=1569bp
CCTCCCTCAGCTGTTCTACCGCGCTCTGTCTTGTTGTCCCTCCTCTCAAA
GCCTATGGCTCGACTCCTGCTTATCCCTCCGCCGACTCTTTACCCCAGAG
GAGAAGGAGGAGATGAGGAGGGGCATGGAGCGAAAAGGTTTCATCATGAG
GGTGGCGGATTGAGGAGCAGAGGGTGTGGTGGAAGGTTGAAAGGCAAAAG
GAGAAGAGAGAGGAGGATCGTGATGTGAAGCGAAGGGGCAAGGATGCACG
AAAAAAAATGGAAATAGGCCGGCGCGCACGAGCTTTTGGCTTGTGAAGGC
AATAAAAGCACATCCGTATATCGTATTATAGGTATAATGTAAAAATTTAG
CATACTTCTTTTACTTTCCACCGTGTTGTCGTAGGAGTGCCCCGCTGGCT
TCTTCATGGGCCCGTGTCAGGCGATTATTTCCGACTTGCTTGGCACTTTT
ATGGACGGATACCGATACACGCCACGTCTCTCGATAATCTTTATCCCGGT
ACATTAAACTAGAATGCAGCACATATGTTTCATTGAGTGATCTATAAGTA
CACCAACTGACAGGTACAATCTAACGGAAGTGACGGAGACAAAGACAATG
GCGGAAGCTCGCGATTTTACTACAACTGCCCGCTCAAGCCAAGGGAAGAG
GAAAGCCCCCGGCGGCAACGCAACAGGGGAGGTTGTGGGGAGAGAGGAAT
CGTACAACACCATCACACCGCCATCAGATGGCATGAAAGATGGAGGGGAT
GCCAGTGAGGCCACATGTACAGGACAACCGGAAAAATTAGTTGACGCCAC
GGAGACTGTGACGCCCATTTTTCCAGAAGCAGGGTCCGAGGAAGCAGCAT
CGCCTCCAACGACGGATGAAGAGCATGTGCCAATACCAACGGTGCTACAA
GCATTGGAATGCATGTCAAAGCCGGATCTACCACCTCAACCCATGAGCAC
GTGCGTGAAGGAGCTGTATGACTACATACAAGAGCAGGATGAAGACCCGC
GCCAAGATCTTTACGAGGGTAAGAGGCGGGAGGGAGGGAGGGAGAGAGGA
AAGGAGGGAGGGAGAGAGGGAGGAAGGGAGGGAGGGAGGGAAGGGATGGA
AATAGGAGGAAGGGTGTGTGTTTTATCGAAGTTCTCGAGATTTTGTCGAG
AGTTGTTGTCGTTTAATTGAATGAATGGATACAAAGCCTTGGTTGTGTTT
TGGAAGTGATGGATGCTTCCTTCTCACGAGAGCTCTCCCAGCGGTTGGGT
CATGCGATGCCCGTACCAGGGAATGGGATAGATTTTTCCTCGAAATTTCG
CAGCCGGTTGTGACATACTCCATCCCTCATGCATCTGCTTCTTTCTCATG
GTGGGAATTCGGGGCATGACCTTCAGAAATGATGGGAATGGATGCGGAGG
CCCTTGCCCGGCGGATGGACGATTTGCGAGCCCTCGCCTCGGAGCTTCAA
TGCAAGGAAGAAAGAGTGCTGGAGAAGCTAAGGAACGGCCCGGTCTTCAA
GACGGAATGAGGGCTTATAATGCTCTTCATCTATGTAGGGGAAAGGAAAA
GAACAAAAAAGCGAGTATG

protein sequence of rna7686

>rna7686-protein ID=rna7686-protein|Name=rna7686|organism=Nannochloropsis gaditana|type=polypeptide|length=198bp
MAEARDFTTTARSSQGKRKAPGGNATGEVVGREESYNTITPPSDGMKDGG
DASEATCTGQPEKLVDATETVTPIFPEAGSEEAASPPTTDEEHVPIPTVL
QALECMSKPDLPPQPMSTCVKELYDYIQEQDEDPRQDLYEEMMGMDAEAL
ARRMDDLRALASELQCKEGEYRETNRVLRTLCWKGVLKRYPGIIWFEE

mRNA from alignment at CM002473.1:66351..68630+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7686 ID=rna7686|Name=rna7686|organism=Nannochloropsis gaditana|type=mRNA|length=2280bp|location=Sequence derived from alignment at CM002473.1:66351..68630+ (Nannochloropsis gaditana)
tccctcagctgTTCTACCGCGCTCTGTCTTGttgtccctcctctcaaAGC
CTATGGCTCGACTCCTGCTTATCCCTCCGCCGACTCTTTACcccagagga
gaaggaggagatgaggaggggcatggagcGAAAAGGTTTCATCATGAGGG
TGGCGGATTGAGGAGCAGAGGGTGTGGTGGAAGGTTGAAAggcaaaagga
gaagagagaggaggatcgTGATGTGAAGCGAAGGGGCAAGGATGcacgaa
aaaaaatggaaataGGCCGGCGCGCACGAGCTTTTGGCTTGTGAAGGCAA
TAAAAGCACATCCGTATATCGTATTATAGGTATAATGTAAAAATTTAGCA
TACTTCTTTTACTTTCCACCGTGTTGTCGTAGGAGTGCCCCGCTGGCTTC
TTCATGGGCCCGTGTCAGGCGATTATTTCCGACTTGCTTGGCACTTTTAT
GGACGGATACCGATACACGCCACGTCTCTCGATAATCTTTATCCCGGTAC
ATTAAACTAGAATGCAGCACATATGTTTCATTGAGTGATCTATAAGGTAA
CAAGCCGAAGGACAGGTCGTGGTGGGGGAATGAACCTCCTCGCACTCCGT
ATCAAGCCCGAGAGTGGGGAAAGCTTTGCATGTACATTCCCCATCCTCAA
GCATCCATTGCCCCCGCGTGCGTCGTAAAGTACACCAACTGACAGGTACA
ATCTAACGGAAGTGACGGAGACAAAGACAATGGCGGAAGCTCGCGATTTT
ACTACAACTGCCCGCTCAAgccaagggaagaggaaagcccCCGGCGGCAA
CGCAACAGGGGAGGTtgtggggagagaggaatcGTACAACACCATCACAC
CGCCATCAGATGGCATgaaagatggaggggatGCCAGTGAGGCCACATGT
ACAGGACAACCGGAAAAATTAGTTGACGCCACGGAGACTGTGACGCCCAT
TTTTCCAGAAGCAGGGTCCGAGGAAGCAGCATCGCCTCCAACGACGGATG
AAGAGCATGTGCCAATACCAACGGTGCTACAAGCATTGGAATGCATGTCA
AAGGTAAGCAAATAGGTCGTGGATCCCTGCGGTCGTGATGCTTTAATTTG
CAACACTATTGTTACTGACTTCCGCAATACTTTCTATGGTCCATGCGCGT
TTCCTTGTCCTTAAGCCGGATCTACCACCTCAACCCATGAGCACGTGCGT
GAAGGAGCTGTATGACTACATACAAGAGCAGGATGAAGACCCGCGCCAAG
ATCTTTACGAGGGtaagaggcgggagggagggagggagagaggaaaggag
ggagggagagagggaggaagggagggagggagggaagggatggaaatagg
aggaagggtgtgTGTTTTATCGAAGTTCTCGAGATTTTGTCGAGAGTTGT
TGTCGTTTAATTGAATGAATGGATACAAAGCCTTGGTTGTGTTTTGGAAG
TGATGGATGCTTCCTTCTCACGAGAGCTCTCCCAGCGGTTGGGTCATGCG
ATGCCCGTACCAGGGAATGGGATAGATTTTTCCTCGAAATTTCGCAGCCG
GTTGTGACATACTCCATCCCTCATGCATCTGCTTCTTTCTCATGGTGGGA
ATTCGGGGCATGACCTTCAGAAATGATGGGAATGGATGCGGAGGCCCTTG
CCCGGCGGATGGACGATTTGCGAGCCCTCGCCTCGGAGCTTCAATGCAAG
GAAGGTGAGTACCGGGAAACTAATCGGGTCTTACGAACACTTTGCTGGAA
GGGGGTGTTGAAGAGATATCCTGGCATCATATGGTTTGAGGAATAAAATA
GGCGACGGACGACGTTATGTGTGTATGTATGCCACCGGGCAACGGTcgaa
aaaaaatgcgcgaaatAAATTGCGGTTCGCGGAAAAACCAAACAAATAAT
CCAACACGttggagccggaggagacGCGGCAAGGAAGGTAGTTTTGGGTA
CCGCGATGCGTTATACTTGAAAAAGGTGCCAGCATCAGACAGAGtcgaaa
gaagaggaggggtaCCTGGACTCGCGCGGCCTGTCTCTGGGTGACTGTGA
AAGTTACGCTCAATGAAGGCCTACCGAGGTCCCTGGttttcttccctgcc
tctagggtgggagggaaacgaaTGACTGATACAagcgtccttctcttctt
ctttcttttctttttccccagAAAGAGTGCTGGAGAAGCTAAGGAACGGC
CCGGTCTTCAAGACGGAATGAGGGCTTATAATGCTCTTCATCTATgtagg
ggaaaggaaaagaacaAAAAAGCGAGTATG

Coding sequence (CDS) from alignment at CM002473.1:66351..68630+

>rna7686 ID=rna7686|Name=rna7686|organism=Nannochloropsis gaditana|type=CDS|length=1791bp|location=Sequence derived from alignment at CM002473.1:66351..68630+ (Nannochloropsis gaditana)
ATGGCGGAAGCTCGCGATTTTACTACAACTGCCCGCTCAAgccaagggaa
gaggaaagcccCCGGCGGCAACGCAACAGGGGAGGTtgtggggagagagg
aatcGTACAACACCATCACACCGCCATCAGATGGCATgaaagatggaggg
gatGCCAGTGAGGCCACATGTACAGGACAACCGGAAAAATTAGTTGACGC
CACGGAGACTGTGACGCCCATTTTTCCAGAAGCAGGGTCCGAGGAAGCAG
CATCGCCTCCAACGACGGATGAAGAGCATGTGCCAATACCAACGGTGCTA
CAAGCATTGGAATGCATGTCAAAGCCGGATCTACCACCTCAACCCATGAG
CACGTGCGTGAAGGAGCTGTATGACTACATACAAGAGCAGGATGAAGACC
CGCGCCAAGATCTTTACGAGGAAATGATGGGAATGGATGCGGAGGCCCTT
GCCCGGCGGATGGACGATTTGCGAGCCCTCGCCTCGGAGCTTCAATGCAA
GGAAGGTGAGTACCGGGAAACTAATCGGGTCTTACGAACACTTTGCTGGA
AGGGGGTGTTGAAGAGATATCCTGGCATCATATGGTTTGAGGAATAAATG
GCGGAAGCTCGCGATTTTACTACAACTGCCCGCTCAAgccaagggaagag
gaaagcccCCGGCGGCAACGCAACAGGGGAGGTtgtggggagagaggaat
cGTACAACACCATCACACCGCCATCAGATGGCATgaaagatggaggggat
GCCAGTGAGGCCACATGTACAGGACAACCGGAAAAATTAGTTGACGCCAC
GGAGACTGTGACGCCCATTTTTCCAGAAGCAGGGTCCGAGGAAGCAGCAT
CGCCTCCAACGACGGATGAAGAGCATGTGCCAATACCAACGGTGCTACAA
GCATTGGAATGCATGTCAAAGCCGGATCTACCACCTCAACCCATGAGCAC
GTGCGTGAAGGAGCTGTATGACTACATACAAGAGCAGGATGAAGACCCGC
GCCAAGATCTTTACGAGGAAATGATGGGAATGGATGCGGAGGCCCTTGCC
CGGCGGATGGACGATTTGCGAGCCCTCGCCTCGGAGCTTCAATGCAAGGA
AGGTGAGTACCGGGAAACTAATCGGGTCTTACGAACACTTTGCTGGAAGG
GGGTGTTGAAGAGATATCCTGGCATCATATGGTTTGAGGAATAAATGGCG
GAAGCTCGCGATTTTACTACAACTGCCCGCTCAAgccaagggaagaggaa
agcccCCGGCGGCAACGCAACAGGGGAGGTtgtggggagagaggaatcGT
ACAACACCATCACACCGCCATCAGATGGCATgaaagatggaggggatGCC
AGTGAGGCCACATGTACAGGACAACCGGAAAAATTAGTTGACGCCACGGA
GACTGTGACGCCCATTTTTCCAGAAGCAGGGTCCGAGGAAGCAGCATCGC
CTCCAACGACGGATGAAGAGCATGTGCCAATACCAACGGTGCTACAAGCA
TTGGAATGCATGTCAAAGCCGGATCTACCACCTCAACCCATGAGCACGTG
CGTGAAGGAGCTGTATGACTACATACAAGAGCAGGATGAAGACCCGCGCC
AAGATCTTTACGAGGAAATGATGGGAATGGATGCGGAGGCCCTTGCCCGG
CGGATGGACGATTTGCGAGCCCTCGCCTCGGAGCTTCAATGCAAGGAAGG
TGAGTACCGGGAAACTAATCGGGTCTTACGAACACTTTGCTGGAAGGGGG
TGTTGAAGAGATATCCTGGCATCATATGGTTTGAGGAATAA

Synonyms

Publications