EWM23008.1, cds7666 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM23008.1
Unique Name	cds7666
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002473.1:67080..67403 +
Alignment location	CM002473.1:67516..67612 +
Alignment location	CM002473.1:67971..68146 +

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM23008.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100905g3.4528.mrna
Gbkey	CDS
Note	encoded by transcript variant 3; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002473.1	supercontig	CM002473.1:67080..67403 +
CM002473.1	supercontig	CM002473.1:67516..67612 +
CM002473.1	supercontig	CM002473.1:67971..68146 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

[Close]

BLAST of EWM23008.1 vs. NCBI_GenBank
Match: gi|585103782|gb|EWM23008.1| (hypothetical protein Naga_100905g3 [Nannochloropsis gaditana])

HSP 1 Score: 407.142 bits (1045), Expect = 9.018e-144
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 0

Query:    1 MAEARDFTTTARSSQGKRKAPGGNATGEVVGREESYNTITPPSDGMKDGGDASEATCTGQPEKLVDATETVTPIFPEAGSEEAASPPTTDEEHVPIPTVLQALECMSKPDLPPQPMSTCVKELYDYIQEQDEDPRQDLYEEMMGMDAEALARRMDDLRALASELQCKEGEYRETNRVLRTLCWKGVLKRYPGIIWFEE 198
            MAEARDFTTTARSSQGKRKAPGGNATGEVVGREESYNTITPPSDGMKDGGDASEATCTGQPEKLVDATETVTPIFPEAGSEEAASPPTTDEEHVPIPTVLQALECMSKPDLPPQPMSTCVKELYDYIQEQDEDPRQDLYEEMMGMDAEALARRMDDLRALASELQCKEGEYRETNRVLRTLCWKGVLKRYPGIIWFEE
Sbjct:    1 MAEARDFTTTARSSQGKRKAPGGNATGEVVGREESYNTITPPSDGMKDGGDASEATCTGQPEKLVDATETVTPIFPEAGSEEAASPPTTDEEHVPIPTVLQALECMSKPDLPPQPMSTCVKELYDYIQEQDEDPRQDLYEEMMGMDAEALARRMDDLRALASELQCKEGEYRETNRVLRTLCWKGVLKRYPGIIWFEE 198

[Close]

BLAST of EWM23008.1 vs. NCBI_GenBank
Match: gi|585103780|gb|EWM23006.1| (hypothetical protein Naga_100905g3 [Nannochloropsis gaditana])

HSP 1 Score: 343.199 bits (879), Expect = 1.097e-118
Identity = 174/188 (92.55%), Postives = 174/188 (92.55%), Query Frame = 0

Query:    1 MAEARDFTTTARSSQGKRKAPGGNATGEVVGREESYNTITPPSDGMKDGGDASEATCTGQPEKLVDATETVTPIFPEAGSEEAASPPTTDEEHVPIPTVLQALECMSKPDLPPQPMSTCVKELYDYIQEQDEDPRQDLYEEMMGMDAEALARRMDDLRALASELQCKEGEYRETNRVLRTLCWKGVLK 188
            MAEARDFTTTARSSQGKRKAPGGNATGEVVGREESYNTITPPSDGMKDGGDASEATCTGQPEKLVDATETVTPIFPEAGSEEAASPPTTDEEHVPIPTVLQALECMSKPDLPPQPMSTCVKELYDYIQEQDEDPRQDLYEEMMGMDAEALARRMDDLRALASELQCKE       RVL  L    V K
Sbjct:    1 MAEARDFTTTARSSQGKRKAPGGNATGEVVGREESYNTITPPSDGMKDGGDASEATCTGQPEKLVDATETVTPIFPEAGSEEAASPPTTDEEHVPIPTVLQALECMSKPDLPPQPMSTCVKELYDYIQEQDEDPRQDLYEEMMGMDAEALARRMDDLRALASELQCKE------ERVLEKLRNGPVFK 182

[Close]

BLAST of EWM23008.1 vs. NCBI_GenBank
Match: gi|553177713|ref|XP_005852490.1| (hypothetical protein NGA_0696800 [Nannochloropsis gaditana CCMP526] >gi|422296043|gb|EKU23342.1| hypothetical protein NGA_0696800 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 332.028 bits (850), Expect = 3.257e-114
Identity = 169/188 (89.89%), Postives = 172/188 (91.49%), Query Frame = 0

Query:    1 MAEARDFTTTARSSQGKRKAPGGNATGEVVGREESYNTITPPSDGMKDGGDASEATCTGQPEKLVDATETVTPIFPEAGSEEAASPPTTDEEHVPIPTVLQALECMSKPDLPPQPMSTCVKELYDYIQEQDEDPRQDLYEEMMGMDAEALARRMDDLRALASELQCKEGEYRETNRVLRTLCWKGVLK 188
            MAEARDFTTTARSSQGKRKAPGGNATGEVVGREESYNTITPPSDGMK+GGDASEATCTGQPEKLVDATETVTPIFP AGSEEAASPPTTDEEHVPIPTVLQALECMSKPDLPP+PMSTCVKEL+DYIQEQDEDPRQDLYEEMMGMDAEALARRMDDLRALASELQ KE       RVL  L    V K
Sbjct:    1 MAEARDFTTTARSSQGKRKAPGGNATGEVVGREESYNTITPPSDGMKEGGDASEATCTGQPEKLVDATETVTPIFPGAGSEEAASPPTTDEEHVPIPTVLQALECMSKPDLPPKPMSTCVKELFDYIQEQDEDPRQDLYEEMMGMDAEALARRMDDLRALASELQRKE------ERVLEKLRNGPVFK 182

[Close]

BLAST of EWM23008.1 vs. NCBI_GenBank
Match: gi|585103781|gb|EWM23007.1| (hypothetical protein Naga_100905g3 [Nannochloropsis gaditana] >gi|585103783|gb|EWM23009.1| hypothetical protein Naga_100905g3 [Nannochloropsis gaditana])

HSP 1 Score: 286.189 bits (731), Expect = 4.946e-96
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0

Query:    1 MAEARDFTTTARSSQGKRKAPGGNATGEVVGREESYNTITPPSDGMKDGGDASEATCTGQPEKLVDATETVTPIFPEAGSEEAASPPTTDEEHVPIPTVLQALECMSKPDLPPQPMSTCVKELYDYIQEQDEDPRQDLYE 140
            MAEARDFTTTARSSQGKRKAPGGNATGEVVGREESYNTITPPSDGMKDGGDASEATCTGQPEKLVDATETVTPIFPEAGSEEAASPPTTDEEHVPIPTVLQALECMSKPDLPPQPMSTCVKELYDYIQEQDEDPRQDLYE
Sbjct:    1 MAEARDFTTTARSSQGKRKAPGGNATGEVVGREESYNTITPPSDGMKDGGDASEATCTGQPEKLVDATETVTPIFPEAGSEEAASPPTTDEEHVPIPTVLQALECMSKPDLPPQPMSTCVKELYDYIQEQDEDPRQDLYE 140

The following BLAST results are available for this feature:

BLAST of EWM23008.1 vs. NCBI_GenBank

BLAST of EWM23008.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4


Match Name	E-value	Identity	Description
gi\|585103782\|gb\|EWM23008.1\|	9.018e-144	100.00	hypothetical protein Naga_100905g3 [Nannochloropsi...	[more]
gi\|585103780\|gb\|EWM23006.1\|	1.097e-118	92.55	hypothetical protein Naga_100905g3 [Nannochloropsi...	[more]
gi\|553177713\|ref\|XP_005852490.1\|	3.257e-114	89.89	hypothetical protein NGA_0696800 [Nannochloropsis ...	[more]
gi\|585103781\|gb\|EWM23007.1\|	4.946e-96	100.00	hypothetical protein Naga_100905g3 [Nannochloropsi...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna7686	rna7686	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications