|
|
Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100905g3.4527.mrna |
| Orig protein id | gnl|cribi|Naga_100905g3.4527 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002473.1 | supercontig | CM002473.1:66349..68630 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna7685 ID=rna7685|Name=rna7685|organism=Nannochloropsis gaditana|type=mRNA|length=2036bp
CCTCCCTCAGCTGTTCTACCGCGCTCTGTCTTGTTGTCCCTCCTCTCAAA
GCCTATGGCTCGACTCCTGCTTATCCCTCCGCCGACTCTTTACCCCAGAG
GAGAAGGAGGAGATGAGGAGGGGCATGGAGCGAAAAGGTTTCATCATGAG
GGTGGCGGATTGAGGAGCAGAGGGTGTGGTGGAAGGTTGAAAGGCAAAAG
GAGAAGAGAGAGGAGGATCGTGATGTGAAGCGAAGGGGCAAGGATGCACG
AAAAAAAATGGAAATAGGCCGGCGCGCACGAGCTTTTGGCTTGTGAAGGC
AATAAAAGCACATCCGTATATCGTATTATAGGTATAATGTAAAAATTTAG
CATACTTCTTTTACTTTCCACCGTGTTGTCGTAGGAGTGCCCCGCTGGCT
TCTTCATGGGCCCGTGTCAGGCGATTATTTCCGACTTGCTTGGCACTTTT
ATGGACGGATACCGATACACGCCACGTCTCTCGATAATCTTTATCCCGGT
ACATTAAACTAGAATGCAGCACATATGTTTCATTGAGTGATCTATAAGTA
CACCAACTGACAGGTACAATCTAACGGAAGTGACGGAGACAAAGACAATG
GCGGAAGCTCGCGATTTTACTACAACTGCCCGCTCAAGCCAAGGGAAGAG
GAAAGCCCCCGGCGGCAACGCAACAGGGGAGGTTGTGGGGAGAGAGGAAT
CGTACAACACCATCACACCGCCATCAGATGGCATGAAAGATGGAGGGGAT
GCCAGTGAGGCCACATGTACAGGACAACCGGAAAAATTAGTTGACGCCAC
GGAGACTGTGACGCCCATTTTTCCAGAAGCAGGGTCCGAGGAAGCAGCAT
CGCCTCCAACGACGGATGAAGAGCATGTGCCAATACCAACGGTGCTACAA
GCATTGGAATGCATGTCAAAGCCGGATCTACCACCTCAACCCATGAGCAC
GTGCGTGAAGGAGCTGTATGACTACATACAAGAGCAGGATGAAGACCCGC
GCCAAGATCTTTACGAGGGTAAGAGGCGGGAGGGAGGGAGGGAGAGAGGA
AAGGAGGGAGGGAGAGAGGGAGGAAGGGAGGGAGGGAGGGAAGGGATGGA
AATAGGAGGAAGGGTGTGTGTTTTATCGAAGTTCTCGAGATTTTGTCGAG
AGTTGTTGTCGTTTAATTGAATGAATGGATACAAAGCCTTGGTTGTGTTT
TGGAAGTGATGGATGCTTCCTTCTCACGAGAGCTCTCCCAGCGGTTGGGT
CATGCGATGCCCGTACCAGGGAATGGGATAGATTTTTCCTCGAAATTTCG
CAGCCGGTTGTGACATACTCCATCCCTCATGCATCTGCTTCTTTCTCATG
GTGGGAATTCGGGGCATGACCTTCAGAAATGATGGGAATGGATGCGGAGG
CCCTTGCCCGGCGGATGGACGATTTGCGAGCCCTCGCCTCGGAGCTTCAA
TGCAAGGAAGGTGAGTACCGGGAAACTAATCGGGTCTTACGAACACTTTG
CTGGAAGGGGGTGTTGAAGAGATATCCTGGCATCATATGGTTTGAGGAAT
AAAATAGGCGACGGACGACGTTATGTGTGTATGTATGCCACCGGGCAACG
GTCGAAAAAAAATGCGCGAAATAAATTGCGGTTCGCGGAAAAACCAAACA
AATAATCCAACACGTTGGAGCCGGAGGAGACGCGGCAAGGAAGGTAGTTT
TGGGTACCGCGATGCGTTATACTTGAAAAAGGTGCCAGCATCAGACAGAG
TCGAAAGAAGAGGAGGGGTACCTGGACTCGCGCGGCCTGTCTCTGGGTGA
CTGTGAAAGTTACGCTCAATGAAGGCCTACCGAGGTCCCTGGTTTTCTTC
CCTGCCTCTAGGGTGGGAGGGAAACGAATGACTGATACAAGCGTCCTTCT
CTTCTTCTTTCTTTTCTTTTTCCCCAGAAAGAGTGCTGGAGAAGCTAAGG
AACGGCCCGGTCTTCAAGACGGAATGAGGGCTTATAATGCTCTTCATCTA
TGTAGGGGAAAGGAAAAGAACAAAAAAGCGAGTATG back to topprotein sequence of rna7685 >rna7685-protein ID=rna7685-protein|Name=rna7685|organism=Nannochloropsis gaditana|type=polypeptide|length=190bp
MAEARDFTTTARSSQGKRKAPGGNATGEVVGREESYNTITPPSDGMKDGG
DASEATCTGQPEKLVDATETVTPIFPEAGSEEAASPPTTDEEHVPIPTVL
QALECMSKPDLPPQPMSTCVKELYDYIQEQDEDPRQDLYEGKRREGGRER
GKEGGREGGREGGREGMEIGGRVCVLSKFSRFCRELLSFN back to topmRNA from alignment at CM002473.1:66349..68630+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna7685 ID=rna7685|Name=rna7685|organism=Nannochloropsis gaditana|type=mRNA|length=2282bp|location=Sequence derived from alignment at CM002473.1:66349..68630+ (Nannochloropsis gaditana)
cctccctcagctgTTCTACCGCGCTCTGTCTTGttgtccctcctctcaaA
GCCTATGGCTCGACTCCTGCTTATCCCTCCGCCGACTCTTTACcccagag
gagaaggaggagatgaggaggggcatggagcGAAAAGGTTTCATCATGAG
GGTGGCGGATTGAGGAGCAGAGGGTGTGGTGGAAGGTTGAAAggcaaaag
gagaagagagaggaggatcgTGATGTGAAGCGAAGGGGCAAGGATGcacg
aaaaaaaatggaaataGGCCGGCGCGCACGAGCTTTTGGCTTGTGAAGGC
AATAAAAGCACATCCGTATATCGTATTATAGGTATAATGTAAAAATTTAG
CATACTTCTTTTACTTTCCACCGTGTTGTCGTAGGAGTGCCCCGCTGGCT
TCTTCATGGGCCCGTGTCAGGCGATTATTTCCGACTTGCTTGGCACTTTT
ATGGACGGATACCGATACACGCCACGTCTCTCGATAATCTTTATCCCGGT
ACATTAAACTAGAATGCAGCACATATGTTTCATTGAGTGATCTATAAGGT
AACAAGCCGAAGGACAGGTCGTGGTGGGGGAATGAACCTCCTCGCACTCC
GTATCAAGCCCGAGAGTGGGGAAAGCTTTGCATGTACATTCCCCATCCTC
AAGCATCCATTGCCCCCGCGTGCGTCGTAAAGTACACCAACTGACAGGTA
CAATCTAACGGAAGTGACGGAGACAAAGACAATGGCGGAAGCTCGCGATT
TTACTACAACTGCCCGCTCAAgccaagggaagaggaaagcccCCGGCGGC
AACGCAACAGGGGAGGTtgtggggagagaggaatcGTACAACACCATCAC
ACCGCCATCAGATGGCATgaaagatggaggggatGCCAGTGAGGCCACAT
GTACAGGACAACCGGAAAAATTAGTTGACGCCACGGAGACTGTGACGCCC
ATTTTTCCAGAAGCAGGGTCCGAGGAAGCAGCATCGCCTCCAACGACGGA
TGAAGAGCATGTGCCAATACCAACGGTGCTACAAGCATTGGAATGCATGT
CAAAGGTAAGCAAATAGGTCGTGGATCCCTGCGGTCGTGATGCTTTAATT
TGCAACACTATTGTTACTGACTTCCGCAATACTTTCTATGGTCCATGCGC
GTTTCCTTGTCCTTAAGCCGGATCTACCACCTCAACCCATGAGCACGTGC
GTGAAGGAGCTGTATGACTACATACAAGAGCAGGATGAAGACCCGCGCCA
AGATCTTTACGAGGGtaagaggcgggagggagggagggagagaggaaagg
agggagggagagagggaggaagggagggagggagggaagggatggaaata
ggaggaagggtgtgTGTTTTATCGAAGTTCTCGAGATTTTGTCGAGAGTT
GTTGTCGTTTAATTGAATGAATGGATACAAAGCCTTGGTTGTGTTTTGGA
AGTGATGGATGCTTCCTTCTCACGAGAGCTCTCCCAGCGGTTGGGTCATG
CGATGCCCGTACCAGGGAATGGGATAGATTTTTCCTCGAAATTTCGCAGC
CGGTTGTGACATACTCCATCCCTCATGCATCTGCTTCTTTCTCATGGTGG
GAATTCGGGGCATGACCTTCAGAAATGATGGGAATGGATGCGGAGGCCCT
TGCCCGGCGGATGGACGATTTGCGAGCCCTCGCCTCGGAGCTTCAATGCA
AGGAAGGTGAGTACCGGGAAACTAATCGGGTCTTACGAACACTTTGCTGG
AAGGGGGTGTTGAAGAGATATCCTGGCATCATATGGTTTGAGGAATAAAA
TAGGCGACGGACGACGTTATGTGTGTATGTATGCCACCGGGCAACGGTcg
aaaaaaaatgcgcgaaatAAATTGCGGTTCGCGGAAAAACCAAACAAATA
ATCCAACACGttggagccggaggagacGCGGCAAGGAAGGTAGTTTTGGG
TACCGCGATGCGTTATACTTGAAAAAGGTGCCAGCATCAGACAGAGtcga
aagaagaggaggggtaCCTGGACTCGCGCGGCCTGTCTCTGGGTGACTGT
GAAAGTTACGCTCAATGAAGGCCTACCGAGGTCCCTGGttttcttccctg
cctctagggtgggagggaaacgaaTGACTGATACAagcgtccttctcttc
ttctttcttttctttttccccagAAAGAGTGCTGGAGAAGCTAAGGAACG
GCCCGGTCTTCAAGACGGAATGAGGGCTTATAATGCTCTTCATCTATgta
ggggaaaggaaaagaacaAAAAAGCGAGTATG back to topCoding sequence (CDS) from alignment at CM002473.1:66349..68630+ >rna7685 ID=rna7685|Name=rna7685|organism=Nannochloropsis gaditana|type=CDS|length=1146bp|location=Sequence derived from alignment at CM002473.1:66349..68630+ (Nannochloropsis gaditana)
ATGGCGGAAGCTCGCGATTTTACTACAACTGCCCGCTCAAgccaagggaa
gaggaaagcccCCGGCGGCAACGCAACAGGGGAGGTtgtggggagagagg
aatcGTACAACACCATCACACCGCCATCAGATGGCATgaaagatggaggg
gatGCCAGTGAGGCCACATGTACAGGACAACCGGAAAAATTAGTTGACGC
CACGGAGACTGTGACGCCCATTTTTCCAGAAGCAGGGTCCGAGGAAGCAG
CATCGCCTCCAACGACGGATGAAGAGCATGTGCCAATACCAACGGTGCTA
CAAGCATTGGAATGCATGTCAAAGCCGGATCTACCACCTCAACCCATGAG
CACGTGCGTGAAGGAGCTGTATGACTACATACAAGAGCAGGATGAAGACC
CGCGCCAAGATCTTTACGAGGGtaagaggcgggagggagggagggagaga
ggaaaggagggagggagagagggaggaagggagggagggagggaagggat
ggaaataggaggaagggtgtgTGTTTTATCGAAGTTCTCGAGATTTTGTC
GAGAGTTGTTGTCGTTTAATTGAATGGCGGAAGCTCGCGATTTTACTACA
ACTGCCCGCTCAAgccaagggaagaggaaagcccCCGGCGGCAACGCAAC
AGGGGAGGTtgtggggagagaggaatcGTACAACACCATCACACCGCCAT
CAGATGGCATgaaagatggaggggatGCCAGTGAGGCCACATGTACAGGA
CAACCGGAAAAATTAGTTGACGCCACGGAGACTGTGACGCCCATTTTTCC
AGAAGCAGGGTCCGAGGAAGCAGCATCGCCTCCAACGACGGATGAAGAGC
ATGTGCCAATACCAACGGTGCTACAAGCATTGGAATGCATGTCAAAGCCG
GATCTACCACCTCAACCCATGAGCACGTGCGTGAAGGAGCTGTATGACTA
CATACAAGAGCAGGATGAAGACCCGCGCCAAGATCTTTACGAGGGtaaga
ggcgggagggagggagggagagaggaaaggagggagggagagagggagga
agggagggagggagggaagggatggaaataggaggaagggtgtgTGTTTT
ATCGAAGTTCTCGAGATTTTGTCGAGAGTTGTTGTCGTTTAATTGA back to top
|