EWM23007.1, cds7665 (CDS) Nannochloropsis gaditana

Overview
NameEWM23007.1
Unique Namecds7665
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002473.1:67080..67403 +
Alignment locationCM002473.1:67516..67764 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23007.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100905g3.4527.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:67080..67403 +
CM002473.1supercontigCM002473.1:67516..67764 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM23007.1 vs. NCBI_GenBank
Match: gi|585103781|gb|EWM23007.1| (hypothetical protein Naga_100905g3 [Nannochloropsis gaditana] >gi|585103783|gb|EWM23009.1| hypothetical protein Naga_100905g3 [Nannochloropsis gaditana])

HSP 1 Score: 383.645 bits (984), Expect = 9.284e-135
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0 
Query:    1 MAEARDFTTTARSSQGKRKAPGGNATGEVVGREESYNTITPPSDGMKDGGDASEATCTGQPEKLVDATETVTPIFPEAGSEEAASPPTTDEEHVPIPTVLQALECMSKPDLPPQPMSTCVKELYDYIQEQDEDPRQDLYEGKRREGGRERGKEGGREGGREGGREGMEIGGRVCVLSKFSRFCRELLSFN 190
            MAEARDFTTTARSSQGKRKAPGGNATGEVVGREESYNTITPPSDGMKDGGDASEATCTGQPEKLVDATETVTPIFPEAGSEEAASPPTTDEEHVPIPTVLQALECMSKPDLPPQPMSTCVKELYDYIQEQDEDPRQDLYEGKRREGGRERGKEGGREGGREGGREGMEIGGRVCVLSKFSRFCRELLSFN
Sbjct:    1 MAEARDFTTTARSSQGKRKAPGGNATGEVVGREESYNTITPPSDGMKDGGDASEATCTGQPEKLVDATETVTPIFPEAGSEEAASPPTTDEEHVPIPTVLQALECMSKPDLPPQPMSTCVKELYDYIQEQDEDPRQDLYEGKRREGGRERGKEGGREGGREGGREGMEIGGRVCVLSKFSRFCRELLSFN 190
[Close]
BLAST of EWM23007.1 vs. NCBI_GenBank
Match: gi|585103780|gb|EWM23006.1| (hypothetical protein Naga_100905g3 [Nannochloropsis gaditana])

HSP 1 Score: 286.574 bits (732), Expect = 2.136e-96
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0 
Query:    1 MAEARDFTTTARSSQGKRKAPGGNATGEVVGREESYNTITPPSDGMKDGGDASEATCTGQPEKLVDATETVTPIFPEAGSEEAASPPTTDEEHVPIPTVLQALECMSKPDLPPQPMSTCVKELYDYIQEQDEDPRQDLYE 140
            MAEARDFTTTARSSQGKRKAPGGNATGEVVGREESYNTITPPSDGMKDGGDASEATCTGQPEKLVDATETVTPIFPEAGSEEAASPPTTDEEHVPIPTVLQALECMSKPDLPPQPMSTCVKELYDYIQEQDEDPRQDLYE
Sbjct:    1 MAEARDFTTTARSSQGKRKAPGGNATGEVVGREESYNTITPPSDGMKDGGDASEATCTGQPEKLVDATETVTPIFPEAGSEEAASPPTTDEEHVPIPTVLQALECMSKPDLPPQPMSTCVKELYDYIQEQDEDPRQDLYE 140
[Close]
BLAST of EWM23007.1 vs. NCBI_GenBank
Match: gi|585103782|gb|EWM23008.1| (hypothetical protein Naga_100905g3 [Nannochloropsis gaditana])

HSP 1 Score: 286.189 bits (731), Expect = 4.746e-96
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0 
Query:    1 MAEARDFTTTARSSQGKRKAPGGNATGEVVGREESYNTITPPSDGMKDGGDASEATCTGQPEKLVDATETVTPIFPEAGSEEAASPPTTDEEHVPIPTVLQALECMSKPDLPPQPMSTCVKELYDYIQEQDEDPRQDLYE 140
            MAEARDFTTTARSSQGKRKAPGGNATGEVVGREESYNTITPPSDGMKDGGDASEATCTGQPEKLVDATETVTPIFPEAGSEEAASPPTTDEEHVPIPTVLQALECMSKPDLPPQPMSTCVKELYDYIQEQDEDPRQDLYE
Sbjct:    1 MAEARDFTTTARSSQGKRKAPGGNATGEVVGREESYNTITPPSDGMKDGGDASEATCTGQPEKLVDATETVTPIFPEAGSEEAASPPTTDEEHVPIPTVLQALECMSKPDLPPQPMSTCVKELYDYIQEQDEDPRQDLYE 140
[Close]
BLAST of EWM23007.1 vs. NCBI_GenBank
Match: gi|553177713|ref|XP_005852490.1| (hypothetical protein NGA_0696800 [Nannochloropsis gaditana CCMP526] >gi|422296043|gb|EKU23342.1| hypothetical protein NGA_0696800 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 278.87 bits (712), Expect = 1.907e-93
Identity = 136/140 (97.14%), Postives = 139/140 (99.29%), Query Frame = 0 
Query:    1 MAEARDFTTTARSSQGKRKAPGGNATGEVVGREESYNTITPPSDGMKDGGDASEATCTGQPEKLVDATETVTPIFPEAGSEEAASPPTTDEEHVPIPTVLQALECMSKPDLPPQPMSTCVKELYDYIQEQDEDPRQDLYE 140
            MAEARDFTTTARSSQGKRKAPGGNATGEVVGREESYNTITPPSDGMK+GGDASEATCTGQPEKLVDATETVTPIFP AGSEEAASPPTTDEEHVPIPTVLQALECMSKPDLPP+PMSTCVKEL+DYIQEQDEDPRQDLYE
Sbjct:    1 MAEARDFTTTARSSQGKRKAPGGNATGEVVGREESYNTITPPSDGMKEGGDASEATCTGQPEKLVDATETVTPIFPGAGSEEAASPPTTDEEHVPIPTVLQALECMSKPDLPPKPMSTCVKELFDYIQEQDEDPRQDLYE 140
The following BLAST results are available for this feature:
BLAST of EWM23007.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585103781|gb|EWM23007.1|9.284e-135100.00hypothetical protein Naga_100905g3 [Nannochloropsi... [more]
gi|585103780|gb|EWM23006.1|2.136e-96100.00hypothetical protein Naga_100905g3 [Nannochloropsi... [more]
gi|585103782|gb|EWM23008.1|4.746e-96100.00hypothetical protein Naga_100905g3 [Nannochloropsi... [more]
gi|553177713|ref|XP_005852490.1|1.907e-9397.14hypothetical protein NGA_0696800 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7685rna7685Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications