rna7678, rna7678 (mRNA) Nannochloropsis gaditana

Overview
Namerna7678
Unique Namerna7678
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length313
Alignment locationCM002473.1:41405..41800 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_103208g1.3555.mrna
Orig protein idgnl|cribi|Naga_103208g1.3555
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:41405..41800 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_103208g1gene7435Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7678rna7678-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23015.1cds7658Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7678 ID=rna7678|Name=rna7678|organism=Nannochloropsis gaditana|type=mRNA|length=313bp
AAACTACAGCAAGTATGCCTCGCCTCTTTGTTTCTTCTGTGGCCCTTGTG
GGGGCTGCCCTCTTTTGCTCCTCAAGCTCTCTGGCACACGAGGCCAAGAC
TGTGGAGGTTACGACTCGCAGCGCAAAGCCGAAAGGCGAGAACATTTTCA
AAGGAGCTGAGATGTACGTCAACCCCTACTTTCAAGAGGAGCTTGACTCC
TCCATTAAGACCGCCTCGGGTGAAGTCAAGAAAACTCTGCAATCCATCCG
TGGCCTCTCCTCCGCCTACTGGCTCGATGTCAAGAGCAAGGTGGGTTGAA
ACCGGGTGAAAGG
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protein sequence of rna7678

>rna7678-protein ID=rna7678-protein|Name=rna7678|organism=Nannochloropsis gaditana|type=polypeptide|length=71bp
MNYALLLHNKTTTLWPSFEPRFVIDTGRNGKVSKVEAQRIPRMYLRICAT
PAPTGAISEGRGSGIDPRSRR
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mRNA from alignment at CM002473.1:41405..41800+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7678 ID=rna7678|Name=rna7678|organism=Nannochloropsis gaditana|type=mRNA|length=396bp|location=Sequence derived from alignment at CM002473.1:41405..41800+ (Nannochloropsis gaditana)
ATGAACTACGCGCTGTTGTTGCACAACAAAACCACCACCCTCTGGCCGTC
GTTCGAGCCCCGCTTCGTAATCGACACGGGCCGGAACGGAAAGGTGAGCA
AAGTGGAAGCGCAAAGGATCCCTCGGATGTATTTGTAGGCGCATCCATGA
ATAATCCTGACACTTCCACCGTCCTAAGTAGACATCCCACCGTCCCTCTA
TTGATGTGTTTAAATCCCCATCGATGAGTCATGCGTACTCGTAAGATCAT
TTAAATGGACATCCCaccgttcctccccctcctccatcatccctcccttc
cctccgccctacAGGCGGATATGCGCGACTCCTGCTCCAACTGGTGCAAT
ATCCGAGGGGCGGGGATCGGGCATCGACCCACGGTCAAGACGGTGA
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Coding sequence (CDS) from alignment at CM002473.1:41405..41800+

>rna7678 ID=rna7678|Name=rna7678|organism=Nannochloropsis gaditana|type=CDS|length=432bp|location=Sequence derived from alignment at CM002473.1:41405..41800+ (Nannochloropsis gaditana)
ATGAACTACGCGCTGTTGTTGCACAACAAAACCACCACCCTCTGGCCGTC
GTTCGAGCCCCGCTTCGTAATCGACACGGGCCGGAACGGAAAGGTGAGCA
AAGTGGAAGCGCAAAGGATCCCTCGGATGTATTTGCGGATATGCGCGACT
CCTGCTCCAACTGGTGCAATATCCGAGGGGCGGGGATCGGGCATCGACCC
ACGGTCAAGACGGTGAATGAACTACGCGCTGTTGTTGCACAACAAAACCA
CCACCCTCTGGCCGTCGTTCGAGCCCCGCTTCGTAATCGACACGGGCCGG
AACGGAAAGGTGAGCAAAGTGGAAGCGCAAAGGATCCCTCGGATGTATTT
GCGGATATGCGCGACTCCTGCTCCAACTGGTGCAATATCCGAGGGGCGGG
GATCGGGCATCGACCCACGGTCAAGACGGTGA
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Synonyms
Publications