rna7677, rna7677 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7677
Unique Name	rna7677
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3903
Alignment location	CM002473.1:39789..40648 +

Link to JBrowse

Properties


Property Name	Value
Product	1, 4-beta cellobiohydrolase
Orig transcript id	gnl\|cribi\|Naga_100493g1.5748.mrna
Orig protein id	gnl\|cribi\|Naga_100493g1.5748
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002473.1	supercontig	CM002473.1:39789..40648 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100493g1	gene7434	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7677	rna7677-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23017.1	cds7657	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002473.1:39789..40648+
coding sequence from alignment at CM002473.1:39789..40648+

mRNA sequence

>rna7677 ID=rna7677|Name=rna7677|organism=Nannochloropsis gaditana|type=mRNA|length=3903bp
GGCTTTCGTTTGATGGGGTTGCCAGTCACACATCCCTATGCAGCGGTAGA
CGATTATGGCCCTTTCTTTTCAACATGGTGCTTGTAACGACGTGTCCAGC
GGCGTAAGGACGTGTGATTGTATGTTTGGGGACTGCGGTCGAAATAGATC
CCTCTCATGTGGCATGCGAGGTCCCCTTCGCCACGCCCGCTTGAGAAAGC
GTATAGCCTCGTGACTTTCTCTCCTCTCCCTCGAGTTCTCTCTTTGACCC
GATGTGAGACCGGGGATCCCCCTTTGTTTCTCTCGGGGACTGTGGCGCTT
TCATGAGCGTGGTCGTGGATATGTGCTCGATTTTTGACATCGAATTTGCC
CCTTCCCGGTCAGGAGGAATGGTGAAGACAGACGGAGCCCCCACCTCGAG
CTCCCCTCCTGAGGTTTCTGTGAGTAAAACGGCTTCCTCTTCACCTATCT
CCACGCCTGCCTTCAGCCATGCCCTGTGCATTGAGCTGGAATCATTTCTA
CGGCTCTCGGTGGACGCAACCTACCTTTCCAAATATGTCGCCGCGGCGCA
AATGATGTTCTATCTGCCCCCGGACTCTTCCAGTCCCCCGCCCTCCCTCC
CTTCCTCCCTCCCTCCCTCCCTCACTTCCTCCCCGCTTCAACTCTTGCCC
TGCGGGACACGCGAAGAAGCGCGGGCCTACGTGATTGACCGGCGAGAGCC
GCTCTTTCGACGATGGATCAGCTTGTACTCCAAGCAGCTGAACATGGTCT
CGCTCTTCCTCTCCTTCCTGGGGCTGTCATTCTCCGCCCGCGCCATCGCC
AGCCAAGGAGGCCGCACGACCTATTGCATCTACCTTAAGGAGGAGCGTCT
CGACGGGCTTCCAGGCGCGCTCTACTCGTGCGAGGTCACCGCACCCTCCT
CCAGCACACCCTCCCTCCCGTCCTCCATCCCTTCCTCGGAGTCGAAGGAG
CTTTATCCCGAAGCAGACGGCCCCTCCACCACCTCCTCTCCGTTGGGAAC
GGGGGTGGCCAAGGAGGAAGGGAGGGAGGAAGGGCGAGGGGGCGCACCCG
AAGACCTGCTCCAGCAGCACCTCCACCATTACAACCCGCAGCCGGCGCTC
TCCCCTCCCCCGCTGCCTCAACACATCCACGAACATCAACAACTGCAGCA
GCCACCAGCCTACATGCAACAGCAACCACCGCAGCCGCCGCAACCGCAGT
CGATGGGGCATTACCGACCGCACCCACAGCCGCTCTCCGCCCAAGGCTAC
CATTCCTCCTTCCCCCCCTCGTGTCCTCCTCACGGCCTGAACTACGCGTC
GCCCGAGAACGCGTCCTACCTCCCGCCCTCCCACCCTTCGACGGTGCCGC
CCCCGCCCCCGCCCTTTTACTACCCCCCGCAGGTCGACGCCGCAAGCAAC
TATGCCCACGGCTCCACCACCGCGTCCATCCCCCCTCCCCCTTTGCCTCA
CCCCTACTCTCACCACGGGGGCCAGCACCAACAGCCAAGCAACCTGGCTC
CGCAGCAGCCCTCCATCATGCCCTCCTTCCCTCCGCACATGAACGCCTCC
ATGTCCCAAGGGGGAGGAGGGTCTATGGGGAAAGGAGGGGGGGGAGGGAA
GAAGAGGAAGAGTACGCGTGCTCCCCCTGGGGGGCCCTACTTTGACGAGG
AAGGCAAGACCAAGAAGCGGAACCCCGTGGCCTGCGAAGCCTGCGGACAA
GTCTTTTCCAACAAGGGCAATCTGATCCGACATACCCAACAAAGCTGCCG
CGTCCTTGTCAAAACCCGCAGCAGCAGCAGCAGTAGCAACAGCAGCACGG
GCACCGGCCACGGGAGCACGAACGAGGGCCTGAATATGGGCCGGAGGGAG
GACGCCGGCATCCCTGCCTCCTACCAGCCCTCCCTCGGTCCTGCTATGGG
GCTTTCCAACCTGAGCTACCTCTCCTCCCTCCACCACCCTTCCCTCCACT
CGCAGCCGCAATACCATCCGTCGTCGCAGCCACAGCAGATGCCACAGCAT
CCCGGAAGGGGAGACCCCGCCCATGCTCACCATAGCATGCCTCCTTCGAT
GTACATGACGCTGATGAACAACTGATCGGAGAGGGAGAGGTGGGGTGGGA
GGGTAGGCAGGCGGACGGGGTGGTAGGATGCAGATGGTGAGAGGCGGCAG
ACAGGGAGCGGAGAAAGCAGGCAAAGATAATATATCGCTCTGGGTACAGA
TAAATAGATAAACAGTACTCTGCATAGTAACATGTGACGTTTTTGAGATG
AGGATGATTGAGCGAAGTGAAACGATATACATGGAGGGGACGTGAGAGAT
AAATGAATCCCGAATAGGAAAGGTGAAGGGAGAGAGGGAAATTCCGGAAA
ATAACAAAGCATTCGATAGGTGAGGTGATTCATCATACATTTAGAAGGTA
CACTCAACATAGCCCTCGTCTCCGGTGATGTTACTGGAGGCAAGAGGCGT
ACTGTGGGGGCTCGCGGCTAGGGAAGAGGAAATTTTTTAACAAAGAGTAA
CCCTATGTGTACTTGTGAGGCGAGGGAAGACGCGTTCCAGCATTCATAGT
CATGGCTGGACGCTCGATCCATCATGGACCCCGCCCACATGGACTGTTGG
ATAGCCCCGTCAACAGAAGTCGCCATCACATTTTTAAAAAAAAAGACATT
TAAGACAACACGTGCCACTAAACCTATCGAAATTTTAAGAGGGTGGAGGG
TGCGCTATGGAAGTGCTCAAGGACAAATCGACCCCCTGGAGGATGCTCCC
TCACACGGGACAAGGAGACTGCGACTGGAAAAAAACAAAACTTCTATAGT
ACGAGCGAGTTGCATTTGAAAAAGAGATGTTGCTTCGGTTGTTGGTTTTT
TGTGTTCCATAGATCCTCGTCTTCTGTGGAACAAGCACCTGTTTGTGCAT
TGTATTACTAAAGCACATGGAACATCTTCTAGATGGTATAATTTTATCAT
ACCAGATGCTGCGTATTATATATGCTTTGTTTAGCAGAGAGCATCTAATC
GACAAACACGAAGTTCCTACTTCTTCCAAAACGAGGATTTCTATTATTAC
TTTCCCTTCCCAACGATTTTAAATTTCGGCTATGATCGTGGTCCAAGAGT
ATTCTTGTCAGGGACAAGTGATCGACTCTTGTTTGTACACATATTGCTGT
CTCCAATGCAGATTGCACGAGTTGACAGGTACTATTTTTGGGTCCGCTAA
GATTTTAGGATCATAGGAAAAACGCCGCCAACAGAACAAGTACATGGGCC
ATGTTTTTCACATAAGGAAAAATTGCTTCAACGTTATGTTTCAGGAATCT
ACACGACTCTTAGGAGAATGCTGGGAGCTGCACCATTGATTTATGCCAAC
TGCAGTGAATATACGGCTTAAGAGGAATCACATTTAAATCGGAAAGAAGT
TCTCCCGGATGCGGTCAGTGTCCTCGCATGCTTTACCCTACGCTCGTCAT
GCGTCCAGCCCAGGGCTCTGCCGGGCAGTCTGTGCCAGACACAGACACAA
TGCAACCACTCCGTGCACCTTGCGAACAGGGCGACAGCAAGGGCTGTGGC
GGCAGTTTGGAACCAGGACAAGTATCGGAAACGACAGCACTCGTAGCACC
GTATACCCCCCTCCAACCCCTCCACCCGACGCTCAGAAGCTTCAGGGAGG
GAAAGGCGCGTGCGTCGAGGGAGAGAAGAATACGGAGGAAAAAGGGACGG
AGGAGCATTATCACGAGGACGCAGCTATGAAGGAGGAGGAAGTGGAGGAG
GACATGGGAGAGGACGCCCGGAGCGAAGCGTCGAAGCGGGTGGATTACAG
CAAATGATGTGTCAAGATGAGCTGAGTGCATGAGGTCACCAAGTCAAAGG
GGAAGGGGCAACGATGGGGCGGAGATGAAAGACAAATTTTGCGTGGATGC
TTA

protein sequence of rna7677

>rna7677-protein ID=rna7677-protein|Name=rna7677|organism=Nannochloropsis gaditana|type=polypeptide|length=94bp
MPRLFVSSVALVGAALFCSSSSLAHEAKTVEVTTRSAKPKGENIFKGAEM
YVNPYFQEELDSSIKTASGEVKKTLQSIRGLSSAYWLDVKSKVG

mRNA from alignment at CM002473.1:39789..40648+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7677 ID=rna7677|Name=rna7677|organism=Nannochloropsis gaditana|type=mRNA|length=860bp|location=Sequence derived from alignment at CM002473.1:39789..40648+ (Nannochloropsis gaditana)
AAACTACAGCAAGTATGCCTCGCCTCTTTGTTTCTTCTGTGGCCCTTGTG
GGGGCTGCCCTCTTTTGCTCCTCAAGCTCTCTGGCACACGAGGCCAAGAC
TGTGGAGGTTACGACTCGCAGCGCAAAGCCGAAAGGCGAGAACATTTTCA
AAGGTAGGTGGGTTTACTGGCGAGATTGCCATAAGTACTTGGGAAGATGA
TGAGACGCCGAGGCTGATCCTGAGTGGGGCTTGAAGGGTCTATCGGATCC
CACGCTGTCTTTGCACCCTTTCTTCGTAacttttgctttctttgacTCCC
TTGATGCCTCTGGTCGAATTGAAACTTAcattccgtcctccccctcctcc
tgcactgccctcccttctttcttcctccttccttcccaccgtcctttttt
tccctgtcaAGGAGCTGAGATGTACGTCAACCCCTACTTTCAAGAGGAGC
TTGACTCCTCCATTAAGACCGCCTCGGGTGAAGTCAAggtgaggaaagga
gggagggcaggatggaggagggggagagagggaagggcccTATGTTTATG
CGTATGATTGCTTGGTATGATGGGCTTAAAGCCCCTCCTGGGTGTCCTTG
ACTTTGCTGCAGCATCCTGCGTTTCCGCGGAACGAAGTCTGatatttctt
tttccctccttactttcgctctcccccctctccttccttttcctgccccc
gTTTTTATGCACCCGACGCCCATCCGAATAcaccctcatcttcctccctc
tctgtcccCCCATCACGAACCTTCTAGAAAACTCTGCAATCCATCCGtgg
cctctcctccgcctacTGGCTCGATGTCAAGAGCAAGGTGGGTTGAAACC
GGGTGAAAGG

Coding sequence (CDS) from alignment at CM002473.1:39789..40648+

>rna7677 ID=rna7677|Name=rna7677|organism=Nannochloropsis gaditana|type=CDS|length=855bp|location=Sequence derived from alignment at CM002473.1:39789..40648+ (Nannochloropsis gaditana)
ATGCCTCGCCTCTTTGTTTCTTCTGTGGCCCTTGTGGGGGCTGCCCTCTT
TTGCTCCTCAAGCTCTCTGGCACACGAGGCCAAGACTGTGGAGGTTACGA
CTCGCAGCGCAAAGCCGAAAGGCGAGAACATTTTCAAAGGAGCTGAGATG
TACGTCAACCCCTACTTTCAAGAGGAGCTTGACTCCTCCATTAAGACCGC
CTCGGGTGAAGTCAAgAAAACTCTGCAATCCATCCGtggcctctcctccg
cctacTGGCTCGATGTCAAGAGCAAGGTGGGTTGAATGCCTCGCCTCTTT
GTTTCTTCTGTGGCCCTTGTGGGGGCTGCCCTCTTTTGCTCCTCAAGCTC
TCTGGCACACGAGGCCAAGACTGTGGAGGTTACGACTCGCAGCGCAAAGC
CGAAAGGCGAGAACATTTTCAAAGGAGCTGAGATGTACGTCAACCCCTAC
TTTCAAGAGGAGCTTGACTCCTCCATTAAGACCGCCTCGGGTGAAGTCAA
gAAAACTCTGCAATCCATCCGtggcctctcctccgcctacTGGCTCGATG
TCAAGAGCAAGGTGGGTTGAATGCCTCGCCTCTTTGTTTCTTCTGTGGCC
CTTGTGGGGGCTGCCCTCTTTTGCTCCTCAAGCTCTCTGGCACACGAGGC
CAAGACTGTGGAGGTTACGACTCGCAGCGCAAAGCCGAAAGGCGAGAACA
TTTTCAAAGGAGCTGAGATGTACGTCAACCCCTACTTTCAAGAGGAGCTT
GACTCCTCCATTAAGACCGCCTCGGGTGAAGTCAAgAAAACTCTGCAATC
CATCCGtggcctctcctccgcctacTGGCTCGATGTCAAGAGCAAGGTGG
GTTGA

Synonyms

Publications