EWM23017.1, cds7657 (CDS) Nannochloropsis gaditana

Overview
NameEWM23017.1
Unique Namecds7657
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002473.1:39803..39941 +
Alignment locationCM002473.1:40200..40276 +
Alignment locationCM002473.1:40566..40634 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23017.1
Product1, 4-beta cellobiohydrolase
Orig transcript idgnl|cribi|Naga_100493g1.5748.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:39803..39941 +
CM002473.1supercontigCM002473.1:40200..40276 +
CM002473.1supercontigCM002473.1:40566..40634 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009056catabolic process
GO:0005975carbohydrate metabolic process
GO:0030245cellulose catabolic process
Vocabulary: INTERPRO
TermDefinition
IPR016288Beta_cellobiohydrolase
Homology
BLAST of EWM23017.1 vs. NCBI_GenBank
Match: gi|585103807|gb|EWM23017.1| (1, 4-beta cellobiohydrolase [Nannochloropsis gaditana])

HSP 1 Score: 192.2 bits (487), Expect = 5.160e-62
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0
Query:    1 MPRLFVSSVALVGAALFCSSSSLAHEAKTVEVTTRSAKPKGENIFKGAEMYVNPYFQEELDSSIKTASGEVKKTLQSIRGLSSAYWLDVKSKVG 94
            MPRLFVSSVALVGAALFCSSSSLAHEAKTVEVTTRSAKPKGENIFKGAEMYVNPYFQEELDSSIKTASGEVKKTLQSIRGLSSAYWLDVKSKVG
Sbjct:    1 MPRLFVSSVALVGAALFCSSSSLAHEAKTVEVTTRSAKPKGENIFKGAEMYVNPYFQEELDSSIKTASGEVKKTLQSIRGLSSAYWLDVKSKVG 94          
BLAST of EWM23017.1 vs. NCBI_GenBank
Match: gi|1129152537|gb|OLP73243.1| (Exoglucanase 3, partial [Symbiodinium microadriaticum])

HSP 1 Score: 60.8474 bits (146), Expect = 9.571e-9
Identity = 26/55 (47.27%), Postives = 39/55 (70.91%), Query Frame = 0
Query:   39 PKGENIFKGAEMYVNPYFQEELDSSIKTASGEVKKTLQSIRGLSSAYWLDVKSKV 93
            P G N F+G   YVNP +++ L +SI   SG V+ TL+S++ + SA+W+DVKSK+
Sbjct:   25 PVGSNPFEGHPWYVNPSYRDLLSTSINLTSGGVRATLESMQNVPSAFWIDVKSKI 79          
BLAST of EWM23017.1 vs. NCBI_GenBank
Match: gi|1129185624|gb|OLP91954.1| (Exoglucanase 3 [Symbiodinium microadriaticum])

HSP 1 Score: 58.9214 bits (141), Expect = 4.544e-8
Identity = 28/56 (50.00%), Postives = 38/56 (67.86%), Query Frame = 0
Query:   38 KPKGENIFKGAEMYVNPYFQEELDSSIKTASGEVKKTLQSIRGLSSAYWLDVKSKV 93
            KP G N F+    YVNP +Q  L SSI+TA G +K+TL+++  L SAYWLD + K+
Sbjct:  514 KPDG-NPFEDKVFYVNPSYQASLTSSIETAEGPIKETLEAMMDLPSAYWLDKRDKI 568          

HSP 2 Score: 56.6102 bits (135), Expect = 3.101e-7
Identity = 25/51 (49.02%), Postives = 35/51 (68.63%), Query Frame = 0
Query:   43 NIFKGAEMYVNPYFQEELDSSIKTASGEVKKTLQSIRGLSSAYWLDVKSKV 93
            N F+    YVNP +Q  L SSI+TA G +K+TL+++  L SAYWLD + K+
Sbjct:   85 NPFEDKVFYVNPSYQASLTSSIETAEGPIKETLEAMMDLPSAYWLDKRDKI 135          
BLAST of EWM23017.1 vs. NCBI_GenBank
Match: gi|1129190621|gb|OLP95804.1| (Endoglucanase [Symbiodinium microadriaticum])

HSP 1 Score: 56.6102 bits (135), Expect = 2.485e-7
Identity = 25/53 (47.17%), Postives = 38/53 (71.70%), Query Frame = 0
Query:   41 GENIFKGAEMYVNPYFQEELDSSIKTASGEVKKTLQSIRGLSSAYWLDVKSKV 93
            G N F+G   YVNP +++ L +SI   SG V+ TL+S++ + SA+W+DVKSK+
Sbjct: 1606 GSNPFEGHPWYVNPSYRDLLSTSINLTSGGVRATLESMQNVPSAFWIDVKSKI 1658          
The following BLAST results are available for this feature:
BLAST of EWM23017.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585103807|gb|EWM23017.1|5.160e-62100.001, 4-beta cellobiohydrolase [Nannochloropsis gadit... [more]
gi|1129152537|gb|OLP73243.1|9.571e-947.27Exoglucanase 3, partial [Symbiodinium microadriati... [more]
gi|1129185624|gb|OLP91954.1|4.544e-850.00Exoglucanase 3 [Symbiodinium microadriaticum][more]
gi|1129190621|gb|OLP95804.1|2.485e-747.17Endoglucanase [Symbiodinium microadriaticum][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7677rna7677Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications