rna7674, rna7674 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7674
Unique Name	rna7674
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	607
Alignment location	CM002473.1:26135..27193 -

Link to JBrowse

Properties


Property Name	Value
Product	cytochrome b5
Orig transcript id	gnl\|cribi\|Naga_101010g1.9448.mrna
Orig protein id	gnl\|cribi\|Naga_101010g1.9448
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002473.1	supercontig	CM002473.1:26135..27193 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101010g1	gene7430	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7674	rna7674-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23019.1	cds7654	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002473.1:26135..27193-
coding sequence from alignment at CM002473.1:26135..27193-

mRNA sequence

>rna7674 ID=rna7674|Name=rna7674|organism=Nannochloropsis gaditana|type=mRNA|length=607bp
ACTGCCGCATTTTAAACCTTTTTTCTATCAATTGACACATCTCCATACAG
AGCAACCACACGTGGACTGTTGCAGAGACACAAGGCCGGAAGACTCAAGT
TGTTGTGGGTACTTTGGCTGGGTCACTAAAACGCCGTGAAGCGCTGTCAG
GAAAGCAGTCATCATGCTCTCCCCACTCGCCCCCGAGGCCCCGGAGAGAA
AGAGAAGAAGAGGCTACCCCCGTTCTTCTCAAGCCGGGCCCTCAGTCCTC
CCCCTCGCCCTACTTGCCCTCCTTTTCTTCCAGTGCAAGGCTTTCTTCCC
GATGTCCGCTCCATCCGCATCTTTTCTAGGGCGAGGCTTACTGGCTGGAC
TGCCCTCCTTGCGATCGGAGGGGCCGAGTCTGTGTTTCCCCTCCATTGGT
TTCCACAGCCGGCGTCGTCCGACCAGCTTGCATGCCTTGCTCAAGAATGA
GAGCAGCAGTGGCGTAGAGGGCAGGGGAGGAAGCAAAAGGTTGGAGGAAA
GATCGGACTTGGGAGGGTTGTTTGCGTGCGGGGAGCCTAGCGATGACAGC
ACCCTCCTGCCCTCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCT

protein sequence of rna7674

>rna7674-protein ID=rna7674-protein|Name=rna7674|organism=Nannochloropsis gaditana|type=polypeptide|length=132bp
MDIRIEVFTLVPLYLGRSATERLLPVAQTMFSKLFKSHKKDEPLKPFQGD
LEGLWYLEGKAYDLTKFVKMHPGGSDVLLELKGKDGTAAFRDAHGNNPTS
TPRKKLGRMEVKGISAEVLSSRFSGDRDQCPP

mRNA from alignment at CM002473.1:26135..27193-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7674 ID=rna7674|Name=rna7674|organism=Nannochloropsis gaditana|type=mRNA|length=1059bp|location=Sequence derived from alignment at CM002473.1:26135..27193- (Nannochloropsis gaditana)
ATCCGGAACCGTTGAGCAGGCCCGATCCCATGTCCAATTGGAGAAAGATT
TATGCCATCTTCATGCAGGATTTCTTAATTGTACTCTTTTGAAGCTACCA
ATATCGTATGCGTTACATTCTATGCAAATGACTGATGCACAGTGAGCACT
TTGAACATGGATATACGCATCGAAGTTTTCACTCTTGTACCGCTTTACCT
AGGCAGATCGGCTACCGAGCGTTTATTGCCTGTTGCCCAAACAATGTTTT
CAAAGTTGTTCAAGAGCCACAAAAAAGATGAACCTTTAAAGCCATTTCAA
GGGGATCTGGAGGGACTTTGGTATCTTGAGGGGAAAGCTTACGACTTGAC
GAAATTTGTCAAAATGCACCCAGGTAAGCATGGAGCATGATGGGATGCGA
GGAGGAAAAGCTAAAATTGTCGCGATTTCGACTGAAACATTAATGAATAA
TATAGGATGCCATATATTCGACAAGAATTTCGTATCGAAAAGTCTTGGAA
CTTCTTTCACCACCTTCCGCCTTCCCTATCCTGATCAGGTGGAAGCGACG
TGCTTCTGGAATTGAAAGGAAAGGACGGGACAGCTGCGTTTCGAGATGCT
CATGGCAACAATCCAACTTCTACTCCCCGTAAAAAATTGGGACGCATGGA
AGTGAAAGGGATAAGTGCAGAGGTCTTGTCCTCGAGATTTTCCGGGGATC
GAGATCAATGTCCGCCCTAAAAGGCATGAAAGGACCGGGTCATAGGCGGT
GGAGAAAATGAAATGGGCTGGCAATGAGGGTTTTGAATTCGAGAAGTAAG
TGTTGATTGAAAAAAGATGGGGGGGAAAGTGGAGTAAGGGGATGGAAGAT
TTGGGGAGGTGATTCCAGTTTGTAGATCTGTATGTACGGTTTGGGAGCTC
CTCAACACTCTGCGGTCATCGAAAGCCCACGTGACGTTCCTGCTTAAAAG
CAAGATGACGAGGACGTTGAGACGCTGGGCTCTTTAGTTTTCGAAGGAAA
CTGACCACCTTCATTGTTCTTTGCTTTATATTCAACGGATCCTTCCATAC
TATTCCTCC

Coding sequence (CDS) from alignment at CM002473.1:26135..27193-

>rna7674 ID=rna7674|Name=rna7674|organism=Nannochloropsis gaditana|type=CDS|length=798bp|location=Sequence derived from alignment at CM002473.1:26135..27193- (Nannochloropsis gaditana)
GTGGAAGCGACGTGCTTCTGGAATTGAAAGGAAAGGACGGGACAGCTGCG
TTTCGAGATGCTCATGGCAACAATCCAACTTCTACTCCCCGTAAAAAATT
GGGACGCATGGAAGTGAAAGGGATAAGTGCAGAGGTCTTGTCCTCGAGAT
TTTCCGGGGATCGAGATCAATGTCCGCCCTAAATGGATATACGCATCGAA
GTTTTCACTCTTGTACCGCTTTACCTAGGCAGATCGGCTACCGAGCGTTT
ATTGCCTGTTGCCCAAACAATGTTTTCAAAGTTGTTCAAGAGCCACAAAA
AAGATGAACCTTTAAAGCCATTTCAAGGGGATCTGGAGGGACTTTGGTAT
CTTGAGGGGAAAGCTTACGACTTGACGAAATTTGTCAAAATGCACCCAGG
TGGAAGCGACGTGCTTCTGGAATTGAAAGGAAAGGACGGGACAGCTGCGT
TTCGAGATGCTCATGGCAACAATCCAACTTCTACTCCCCGTAAAAAATTG
GGACGCATGGAAGTGAAAGGGATAAGTGCAGAGGTCTTGTCCTCGAGATT
TTCCGGGGATCGAGATCAATGTCCGCCCTAAATGGATATACGCATCGAAG
TTTTCACTCTTGTACCGCTTTACCTAGGCAGATCGGCTACCGAGCGTTTA
TTGCCTGTTGCCCAAACAATGTTTTCAAAGTTGTTCAAGAGCCACAAAAA
AGATGAACCTTTAAAGCCATTTCAAGGGGATCTGGAGGGACTTTGGTATC
TTGAGGGGAAAGCTTACGACTTGACGAAATTTGTCAAAATGCACCCAG

Synonyms

Publications