EWM23019.1, cds7654 (CDS) Nannochloropsis gaditana

Overview
NameEWM23019.1
Unique Namecds7654
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002473.1:26821..27037 -
Alignment locationCM002473.1:26474..26655 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23019.1
Productcytochrome b5
Orig transcript idgnl|cribi|Naga_101010g1.9448.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:26821..27037 -
CM002473.1supercontigCM002473.1:26474..26655 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0020037heme binding
Vocabulary: INTERPRO
TermDefinition
IPR018506Cyt_B5_heme-BS
IPR001199Cyt_B5-like_heme/steroid-bd
Homology
BLAST of EWM23019.1 vs. NCBI_GenBank
Match: gi|585103811|gb|EWM23019.1| (cytochrome b5 [Nannochloropsis gaditana])

HSP 1 Score: 272.322 bits (695), Expect = 1.370e-92
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0
Query:    1 MDIRIEVFTLVPLYLGRSATERLLPVAQTMFSKLFKSHKKDEPLKPFQGDLEGLWYLEGKAYDLTKFVKMHPGGSDVLLELKGKDGTAAFRDAHGNNPTSTPRKKLGRMEVKGISAEVLSSRFSGDRDQCPP 132
            MDIRIEVFTLVPLYLGRSATERLLPVAQTMFSKLFKSHKKDEPLKPFQGDLEGLWYLEGKAYDLTKFVKMHPGGSDVLLELKGKDGTAAFRDAHGNNPTSTPRKKLGRMEVKGISAEVLSSRFSGDRDQCPP
Sbjct:    1 MDIRIEVFTLVPLYLGRSATERLLPVAQTMFSKLFKSHKKDEPLKPFQGDLEGLWYLEGKAYDLTKFVKMHPGGSDVLLELKGKDGTAAFRDAHGNNPTSTPRKKLGRMEVKGISAEVLSSRFSGDRDQCPP 132          
BLAST of EWM23019.1 vs. NCBI_GenBank
Match: gi|585111941|gb|EWM29412.1| (Cytochrome b5, heme-binding site [Nannochloropsis gaditana])

HSP 1 Score: 63.1586 bits (152), Expect = 4.096e-9
Identity = 31/70 (44.29%), Postives = 43/70 (61.43%), Query Frame = 0
Query:   54 LWYLEGKAYDLTKFVKMHPGGSDVLLELKGKDGTAAFRDAHGNNP-TSTPRKKLGRMEVKGISAEVLSSR 122
            LWY+ G+AYDLT F+  HPGG  VLL  +G+D TA F   H   P T  P K L +M+   +S ++L+ +
Sbjct:   67 LWYIHGRAYDLTDFINKHPGGPTVLLNTQGRDCTALFEAFH---PFTDRPAKLLAKMKEVKVSPDILAEK 133          
BLAST of EWM23019.1 vs. NCBI_GenBank
Match: gi|599359820|ref|XP_007393095.1| (hypothetical protein PHACADRAFT_251577 [Phanerochaete carnosa HHB-10118-sp] >gi|409048272|gb|EKM57750.1| hypothetical protein PHACADRAFT_251577 [Phanerochaete carnosa HHB-10118-sp])

HSP 1 Score: 58.5362 bits (140), Expect = 1.888e-7
Identity = 37/107 (34.58%), Postives = 58/107 (54.21%), Query Frame = 0
Query:   30 MFSKLFKSHKKDEPLKPFQGDLEGLWYL-EGKAYDLTKFVKMHPGGSDVLL--ELKGKDGTAAFRDAHGNNPTSTPRKKLGRMEVKGISAE--VLSSRFSGDRDQCP 131
            M SK  + + +DE  K  + D   LW + +GK YD+T+F  MHPGGS V L  E+ G+D T AF   H +     P  +  R+++  ++ E  V+ +R +G   + P
Sbjct:    1 MASKQLREYTRDEVAKHNKAD--DLWIIIDGKVYDVTRFKGMHPGGSSVFLDEEIPGQDATEAFYALHRHEVLQRP--QYARLQIGTVTGEESVVVARVAGALSKVP 103          
BLAST of EWM23019.1 vs. NCBI_GenBank
Match: gi|742075604|gb|KIA75575.1| (cytochrome b5 [Aspergillus ustus])

HSP 1 Score: 55.8398 bits (133), Expect = 2.439e-7
Identity = 35/85 (41.18%), Postives = 46/85 (54.12%), Query Frame = 0
Query:   28 QTMFSKLFKSHKKDEPLKPFQGDLEGLWYLEGKAYDLTKFVKMHPGGSDVLLELKGKDGTAAFRDA-HGNNPTSTPRKKLGRMEV 111
            +T  +    SHK        +GDL     +  K YD+T FV  HPGG +VLLE+ G+DGT AF D  H +N     R+ L R+EV
Sbjct:    3 KTFTTAEVASHKT-------KGDL--YIVIHDKIYDVTSFVDEHPGGEEVLLEVSGQDGTEAFEDVGHSDN----AREALARLEV 74          
BLAST of EWM23019.1 vs. NCBI_GenBank
Match: gi|749765292|gb|KII89884.1| (hypothetical protein PLICRDRAFT_159111 [Plicaturopsis crispa FD-325 SS-3])

HSP 1 Score: 57.3806 bits (137), Expect = 5.412e-7
Identity = 39/106 (36.79%), Postives = 58/106 (54.72%), Query Frame = 0
Query:   30 MFSKLFKSHKKDEPLKPFQ-GDLEGLWYL-EGKAYDLTKFVKMHPGGSDVLLELKGKDGTAAFRDAHGNNPTSTPRKKLGRMEVKGISAE--VLSSRFSGDRDQCP 131
            M  KL K   +DE  K  + GDL   W + + K +DLT+F  +HPGGS VL+++ G+D T AF   H +     P+ +  R+++  I+ E   LSS   G+  Q P
Sbjct:    1 MSDKLLKQFSRDEVAKHNKDGDL---WVIVDTKVFDLTRFKNLHPGGSFVLVDIAGQDATEAFYSLHRHEILEKPQYQ--RLQIGTIAEEQSSLSSTLPGELSQVP 101          
BLAST of EWM23019.1 vs. NCBI_GenBank
Match: gi|607367739|gb|EZA61871.1| (Cytochrome b5 [Ooceraea biroi])

HSP 1 Score: 53.5286 bits (127), Expect = 5.499e-7
Identity = 25/47 (53.19%), Postives = 34/47 (72.34%), Query Frame = 0
Query:   60 KAYDLTKFVKMHPGGSDVLLELKGKDGTAAFRDAHGNNPTSTPRKKL 106
            K YDLT+FVK HPGG +VLLE+ G DGT  F D+ G++  +  R+K+
Sbjct:    4 KVYDLTRFVKEHPGGEEVLLEVAGSDGTKCF-DSIGHSEEAKLRRKI 49          
BLAST of EWM23019.1 vs. NCBI_GenBank
Match: gi|759035775|ref|XP_011341138.1| (PREDICTED: cytochrome b5 [Ooceraea biroi])

HSP 1 Score: 55.0694 bits (131), Expect = 6.161e-7
Identity = 27/58 (46.55%), Postives = 39/58 (67.24%), Query Frame = 0
Query:   50 DLEGLWY-LEGKAYDLTKFVKMHPGGSDVLLELKGKDGTAAFRDAHGNNPTSTPRKKL 106
            ++  LW  +  K YDLT+FVK HPGG +VLLE+ G DGT  F D+ G++  +  R+K+
Sbjct:   16 NINDLWVVMNRKVYDLTRFVKEHPGGEEVLLEVAGSDGTKCF-DSIGHSEEAKLRRKI 72          
The following BLAST results are available for this feature:
BLAST of EWM23019.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 7
Match NameE-valueIdentityDescription
gi|585103811|gb|EWM23019.1|1.370e-92100.00cytochrome b5 [Nannochloropsis gaditana][more]
gi|585111941|gb|EWM29412.1|4.096e-944.29Cytochrome b5, heme-binding site [Nannochloropsis ... [more]
gi|599359820|ref|XP_007393095.1|1.888e-734.58hypothetical protein PHACADRAFT_251577 [Phanerocha... [more]
gi|742075604|gb|KIA75575.1|2.439e-741.18cytochrome b5 [Aspergillus ustus][more]
gi|749765292|gb|KII89884.1|5.412e-736.79hypothetical protein PLICRDRAFT_159111 [Plicaturop... [more]
gi|607367739|gb|EZA61871.1|5.499e-753.19Cytochrome b5 [Ooceraea biroi][more]
gi|759035775|ref|XP_011341138.1|6.161e-746.55PREDICTED: cytochrome b5 [Ooceraea biroi][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7674rna7674Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications