rna7652, rna7652 (mRNA) Nannochloropsis gaditana

Overview
Namerna7652
Unique Namerna7652
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1179
Alignment locationCM002472.1:479697..481128 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100620g3.3336.mrna
Orig protein idgnl|cribi|Naga_100620g3.3336
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:479697..481128 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100620g3gene7411Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7652rna7652-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23042.1cds7632Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7652 ID=rna7652|Name=rna7652|organism=Nannochloropsis gaditana|type=mRNA|length=1179bp
ATGGCTTCGCAAGTCGAGCGTATCAAATGGATTGAGGGCACGTCATTCCT
TGTCGACGGCTTTAACTTCCTCTCTCCCAAGTGCTCGGCCTACTTTCTCA
CCCACTTCCACAGCGACCACTACTGGGGCCTCCGACCCTCGTTCTGCCAC
GGCACTATCTACTGCAGCGACGTGACCGGCGCCCTCCTCGTCGGCAAGCT
CGGGGTCAAGCCTCAATTCGTCCACACCCTCCCCCTTGAGAAGCCCACTA
CCATTCAGGGCGTAGAGGTCACGCTCTTAGATGCTAATCACTGTCCAGGG
GCGGTCATGCTGCTCTTTCACAACAAGAAAACCAAATCTACCATCCTCCA
CACCGGCGATTTTCGGGCAAGCGAGGCGTTGACCGAGAGGACGGCGTCCT
GGATCCGGGACCGGGACCTGCGTGTGCGCATCCTCTACCTGGACACCACC
TACTGCAATGCCAAGTACACCTTTCCCTCCCAGCCGTCCGTCCTAGCAGC
TCTCAGCCGCATCGCCGAGCGCGAAAAGGCCGAGCGTCCCTCCACCGTCT
TCTACGTCGGCACCTACTCCATCGGGAAGGAGAGGGCGGTGCGGGCCGTG
GCCGCGGGCATTGGATGGAGCTACCTGCGGAATAGGAAGACGGCTCGGGA
CGCTTGCCCCTCCTCCCCCTCCTCCTACACCCCCTGGGTGAACCCCCAAA
ATGGCGCGAAGCTCTACTGGGTACCCTATTCAGAGCACTCCTCCTACACG
GAGCTGAGAAGCTTTGTGCGGGCGATTCGTCCCAGGAAAATTATACCAAC
CGTGGGCGCAGGGGACGAGAAAGGGGTTGAGCGACAACTCAAGCATTTCC
TGGCTGACATGGACCTGTCCCACGATAGATCGCGCCTCGATCGCTACTTG
GGAAGGGGGGAAGAGAAGCGCCTCAAGATTCTTCCTCCAAATAAAAGACG
CTTGGAGGGAGGGGTGGGAGGCAAGCGTAAAACTTTTGACTTCGAAAAGA
TCGACGTAGAGGAGCAGGTCCTGAGGTGGGAGGAGCTTTCCAAAGGGTTG
AACAGCGATGGGAAAGCGCAGGAAAGAGGAAGAGGATGGGACGAGCGTGA
ATTTACCTCTGACACTAAGGAGAAAGGGCTTGGGAGGAAGACGGTCGAAG
TAATTGTACTGGATGATGATGACAACTGA
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protein sequence of rna7652

>rna7652-protein ID=rna7652-protein|Name=rna7652|organism=Nannochloropsis gaditana|type=polypeptide|length=276bp
MGRPPPYPSSTVSLSLIFKFLRLDAPSRAVASKPDSPPYYISMYSILADM
ERCGISTPHRRECEGGIRRQKTTCSISLCLLFLLVDPASVYSWQPRLCPT
MKAKGARKQHLEPSQSAPREAFRHRGGALLQQAAAVSSVLFSLSSSVFLP
PAPALAADDKIVAIEEARAKLEAELKEEKNIQRLETAIENADWETLKQTS
RQFDAYLRGDLMGTARKGLVDKKSANSIREATMYSLIKVNKGARASDVTQ
AVEGVRELRSNLQAFMSLEWEKPQQE
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mRNA from alignment at CM002472.1:479697..481128+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7652 ID=rna7652|Name=rna7652|organism=Nannochloropsis gaditana|type=mRNA|length=1432bp|location=Sequence derived from alignment at CM002472.1:479697..481128+ (Nannochloropsis gaditana)
CAGCATCAAGATCCGCAACGCACCGTACAATTTTTGATATCAGGGCGTTT
CAGAGGaaccaagggaaggaaggacgctCCTTGGTGTCGCACGGGAAAGC
CAGGCATGGGCCGACCTCCCCCGTATCCAAGCAGCACcgtgtccttgtcc
ttgatcTTCAAGTTCCTCCGTCTCGATGCCCCTTCCCGCGCAGTTGCCTC
AAAACCTGACTCTCCCCCATACTACATTTCGATGTACTCGATACTTGCAG
ACATGGAGAGGTGTGGGATATCGACGCCGCATCGACGAGAATGTGAAGGA
GGGATCCGACGACAAAAAACGACCTGCAGCATCTCTCTCTGCctactctt
cctcctcgtcgatcCTGCTTCCGTATATTCATGGCAACCGCGCCTTTGTC
CCACCATGAAAGCAAAGGGAGCCAGAAAACAACATTTGGAGCCTTCGCAA
AGCGCTCCAAGGGAAGCCTTCAGACACAGAGGAGGCGCTCTCCTTCAACA
AGCTGCCGCCGTTTCGAgtgtcctcttctctttgtcctcctcggtaTTTC
TACCTCCTGCACCCGCGTTAGCAGCTGATGACAAGATCGTTGCGATTGAG
GAGGCGAGAGCCAAACTGGAGGCGGAGttgaaagaagaaaagaatatTCA
GCGGTTAGAGACGGCAATCGAGAATGCTGACTGGGAGACACTAAAACAGG
TAATAAGGTGTTGGCAAGTAATCGGAGAGGATCGAGGGTGACAACGAATG
GGATGTAGGTAGGGAAAAGATGAGTATGGACGCTGAGTCTTACACAATGG
CAGAACTTGTGCAGAGATATgtgtgccctccctcgtaaATGATCGACTCC
TTCGTATCCTTGTCTTCCCACCTCGCAACctacccccctcctgcccgtgA
ACTATCCTCCCTAATCGTTCCAGACCTCGAGGCAATTTGACGCCTACTTG
CGAGGAGACTTGATGGGGACGGCCCGGAAGGGTCTGGTGGACAAGAAGTC
CGCGAACTCGATCCGGGAAGCGACCATGTACAGCCTCATCAAGGTCCGTA
cccccctcttccgtccATGGGAGTCCCTCCGCGGGCTGGGAGGTAtcgaa
gagatggaaggcaGGCGCAAGGCGTTTATTTTGTGCCGCCGGTTTCAAAG
CCTTGGCCCCTCaaccttcccctgcctctctcctcgttttcttcctcctt
ttccccctcccaccccccctctcgGCCCTGTCTCCGCGTGGATTCAGGTA
AACAAAGGCGCCCGTGCCTCCGACGTGACACAAGCTGTAGAGGGTGTGAG
AGAACTGCGGAGCAACCTCCAGGCTTTTATGAGCCTGGAGTGGGAAAAGC
CACAGCAAGAGTAATAATAAGAGCAATCAGAGTAAGATGGAACGCTAAAG
AAAGTGAAATGAGAAATGGCATTGGTGCGAGC
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Coding sequence (CDS) from alignment at CM002472.1:479697..481128+

>rna7652 ID=rna7652|Name=rna7652|organism=Nannochloropsis gaditana|type=CDS|length=2493bp|location=Sequence derived from alignment at CM002472.1:479697..481128+ (Nannochloropsis gaditana)
ATGGGCCGACCTCCCCCGTATCCAAGCAGCACcgtgtccttgtccttgat
cTTCAAGTTCCTCCGTCTCGATGCCCCTTCCCGCGCAGTTGCCTCAAAAC
CTGACTCTCCCCCATACTACATTTCGATGTACTCGATACTTGCAGACATG
GAGAGGTGTGGGATATCGACGCCGCATCGACGAGAATGTGAAGGAGGGAT
CCGACGACAAAAAACGACCTGCAGCATCTCTCTCTGCctactcttcctcc
tcgtcgatcCTGCTTCCGTATATTCATGGCAACCGCGCCTTTGTCCCACC
ATGAAAGCAAAGGGAGCCAGAAAACAACATTTGGAGCCTTCGCAAAGCGC
TCCAAGGGAAGCCTTCAGACACAGAGGAGGCGCTCTCCTTCAACAAGCTG
CCGCCGTTTCGAgtgtcctcttctctttgtcctcctcggtaTTTCTACCT
CCTGCACCCGCGTTAGCAGCTGATGACAAGATCGTTGCGATTGAGGAGGC
GAGAGCCAAACTGGAGGCGGAGttgaaagaagaaaagaatatTCAGCGGT
TAGAGACGGCAATCGAGAATGCTGACTGGGAGACACTAAAACAGACCTCG
AGGCAATTTGACGCCTACTTGCGAGGAGACTTGATGGGGACGGCCCGGAA
GGGTCTGGTGGACAAGAAGTCCGCGAACTCGATCCGGGAAGCGACCATGT
ACAGCCTCATCAAGGTAAACAAAGGCGCCCGTGCCTCCGACGTGACACAA
GCTGTAGAGGGTGTGAGAGAACTGCGGAGCAACCTCCAGGCTTTTATGAG
CCTGGAGTGGGAAAAGCCACAGCAAGAGTAAATGGGCCGACCTCCCCCGT
ATCCAAGCAGCACcgtgtccttgtccttgatcTTCAAGTTCCTCCGTCTC
GATGCCCCTTCCCGCGCAGTTGCCTCAAAACCTGACTCTCCCCCATACTA
CATTTCGATGTACTCGATACTTGCAGACATGGAGAGGTGTGGGATATCGA
CGCCGCATCGACGAGAATGTGAAGGAGGGATCCGACGACAAAAAACGACC
TGCAGCATCTCTCTCTGCctactcttcctcctcgtcgatcCTGCTTCCGT
ATATTCATGGCAACCGCGCCTTTGTCCCACCATGAAAGCAAAGGGAGCCA
GAAAACAACATTTGGAGCCTTCGCAAAGCGCTCCAAGGGAAGCCTTCAGA
CACAGAGGAGGCGCTCTCCTTCAACAAGCTGCCGCCGTTTCGAgtgtcct
cttctctttgtcctcctcggtaTTTCTACCTCCTGCACCCGCGTTAGCAG
CTGATGACAAGATCGTTGCGATTGAGGAGGCGAGAGCCAAACTGGAGGCG
GAGttgaaagaagaaaagaatatTCAGCGGTTAGAGACGGCAATCGAGAA
TGCTGACTGGGAGACACTAAAACAGACCTCGAGGCAATTTGACGCCTACT
TGCGAGGAGACTTGATGGGGACGGCCCGGAAGGGTCTGGTGGACAAGAAG
TCCGCGAACTCGATCCGGGAAGCGACCATGTACAGCCTCATCAAGGTAAA
CAAAGGCGCCCGTGCCTCCGACGTGACACAAGCTGTAGAGGGTGTGAGAG
AACTGCGGAGCAACCTCCAGGCTTTTATGAGCCTGGAGTGGGAAAAGCCA
CAGCAAGAGTAAATGGGCCGACCTCCCCCGTATCCAAGCAGCACcgtgtc
cttgtccttgatcTTCAAGTTCCTCCGTCTCGATGCCCCTTCCCGCGCAG
TTGCCTCAAAACCTGACTCTCCCCCATACTACATTTCGATGTACTCGATA
CTTGCAGACATGGAGAGGTGTGGGATATCGACGCCGCATCGACGAGAATG
TGAAGGAGGGATCCGACGACAAAAAACGACCTGCAGCATCTCTCTCTGCc
tactcttcctcctcgtcgatcCTGCTTCCGTATATTCATGGCAACCGCGC
CTTTGTCCCACCATGAAAGCAAAGGGAGCCAGAAAACAACATTTGGAGCC
TTCGCAAAGCGCTCCAAGGGAAGCCTTCAGACACAGAGGAGGCGCTCTCC
TTCAACAAGCTGCCGCCGTTTCGAgtgtcctcttctctttgtcctcctcg
gtaTTTCTACCTCCTGCACCCGCGTTAGCAGCTGATGACAAGATCGTTGC
GATTGAGGAGGCGAGAGCCAAACTGGAGGCGGAGttgaaagaagaaaaga
atatTCAGCGGTTAGAGACGGCAATCGAGAATGCTGACTGGGAGACACTA
AAACAGACCTCGAGGCAATTTGACGCCTACTTGCGAGGAGACTTGATGGG
GACGGCCCGGAAGGGTCTGGTGGACAAGAAGTCCGCGAACTCGATCCGGG
AAGCGACCATGTACAGCCTCATCAAGGTAAACAAAGGCGCCCGTGCCTCC
GACGTGACACAAGCTGTAGAGGGTGTGAGAGAACTGCGGAGCAACCTCCA
GGCTTTTATGAGCCTGGAGTGGGAAAAGCCACAGCAAGAGTAA
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Synonyms
Publications