EWM23042.1, cds7632 (CDS) Nannochloropsis gaditana

Overview
NameEWM23042.1
Unique Namecds7632
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:479802..480395 +
Alignment locationCM002472.1:480620..480739 +
Alignment locationCM002472.1:480944..481060 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23042.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100620g3.3336.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:479802..480395 +
CM002472.1supercontigCM002472.1:480620..480739 +
CM002472.1supercontigCM002472.1:480944..481060 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM23042.1 vs. NCBI_GenBank
Match: gi|585103849|gb|EWM23042.1| (hypothetical protein Naga_100620g3 [Nannochloropsis gaditana])

HSP 1 Score: 566.229 bits (1458), Expect = 0.000e+0
Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 0 
Query:    1 MGRPPPYPSSTVSLSLIFKFLRLDAPSRAVASKPDSPPYYISMYSILADMERCGISTPHRRECEGGIRRQKTTCSISLCLLFLLVDPASVYSWQPRLCPTMKAKGARKQHLEPSQSAPREAFRHRGGALLQQAAAVSSVLFSLSSSVFLPPAPALAADDKIVAIEEARAKLEAELKEEKNIQRLETAIENADWETLKQTSRQFDAYLRGDLMGTARKGLVDKKSANSIREATMYSLIKVNKGARASDVTQAVEGVRELRSNLQAFMSLEWEKPQQE 276
            MGRPPPYPSSTVSLSLIFKFLRLDAPSRAVASKPDSPPYYISMYSILADMERCGISTPHRRECEGGIRRQKTTCSISLCLLFLLVDPASVYSWQPRLCPTMKAKGARKQHLEPSQSAPREAFRHRGGALLQQAAAVSSVLFSLSSSVFLPPAPALAADDKIVAIEEARAKLEAELKEEKNIQRLETAIENADWETLKQTSRQFDAYLRGDLMGTARKGLVDKKSANSIREATMYSLIKVNKGARASDVTQAVEGVRELRSNLQAFMSLEWEKPQQE
Sbjct:    1 MGRPPPYPSSTVSLSLIFKFLRLDAPSRAVASKPDSPPYYISMYSILADMERCGISTPHRRECEGGIRRQKTTCSISLCLLFLLVDPASVYSWQPRLCPTMKAKGARKQHLEPSQSAPREAFRHRGGALLQQAAAVSSVLFSLSSSVFLPPAPALAADDKIVAIEEARAKLEAELKEEKNIQRLETAIENADWETLKQTSRQFDAYLRGDLMGTARKGLVDKKSANSIREATMYSLIKVNKGARASDVTQAVEGVRELRSNLQAFMSLEWEKPQQE 276
[Close]
BLAST of EWM23042.1 vs. NCBI_GenBank
Match: gi|553194333|ref|XP_005855932.1| (hypothetical protein NGA_0560000 [Nannochloropsis gaditana CCMP526] >gi|422293133|gb|EKU20433.1| hypothetical protein NGA_0560000 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 465.692 bits (1197), Expect = 3.679e-165
Identity = 226/227 (99.56%), Postives = 227/227 (100.00%), Query Frame = 0 
Query:   50 MERCGISTPHRRECEGGIRRQKTTCSISLCLLFLLVDPASVYSWQPRLCPTMKAKGARKQHLEPSQSAPREAFRHRGGALLQQAAAVSSVLFSLSSSVFLPPAPALAADDKIVAIEEARAKLEAELKEEKNIQRLETAIENADWETLKQTSRQFDAYLRGDLMGTARKGLVDKKSANSIREATMYSLIKVNKGARASDVTQAVEGVRELRSNLQAFMSLEWEKPQQE 276
            ME+CGISTPHRRECEGGIRRQKTTCSISLCLLFLLVDPASVYSWQPRLCPTMKAKGARKQHLEPSQSAPREAFRHRGGALLQQAAAVSSVLFSLSSSVFLPPAPALAADDKIVAIEEARAKLEAELKEEKNIQRLETAIENADWETLKQTSRQFDAYLRGDLMGTARKGLVDKKSANSIREATMYSLIKVNKGARASDVTQAVEGVRELRSNLQAFMSLEWEKPQQE
Sbjct:    1 MEKCGISTPHRRECEGGIRRQKTTCSISLCLLFLLVDPASVYSWQPRLCPTMKAKGARKQHLEPSQSAPREAFRHRGGALLQQAAAVSSVLFSLSSSVFLPPAPALAADDKIVAIEEARAKLEAELKEEKNIQRLETAIENADWETLKQTSRQFDAYLRGDLMGTARKGLVDKKSANSIREATMYSLIKVNKGARASDVTQAVEGVRELRSNLQAFMSLEWEKPQQE 227
The following BLAST results are available for this feature:
BLAST of EWM23042.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585103849|gb|EWM23042.1|0.000e+0100.00hypothetical protein Naga_100620g3 [Nannochloropsi... [more]
gi|553194333|ref|XP_005855932.1|3.679e-16599.56hypothetical protein NGA_0560000 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7652rna7652Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications