rna7645, rna7645 (mRNA) Nannochloropsis gaditana

Overview
Namerna7645
Unique Namerna7645
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length624
Alignment locationCM002472.1:464151..464735 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100245g1.7077.mrna
Orig protein idgnl|cribi|Naga_100245g1.7077
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:464151..464735 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100245g1gene7404Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23048.1cds7625Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7645rna7645-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7645 ID=rna7645|Name=rna7645|organism=Nannochloropsis gaditana|type=mRNA|length=624bp
ATGGAGGGAGGGAAGGAGGTCCGCCTCTTTGTGGGGGGCCTCCCCGAGGG
ATGCACTGACAAGGATTTAATGCACAAATTTCGCAGGTCAGATCCCGTGG
AGGCCTTCCTGCCCCCGCGCCAGTCCGTGGCGCCTCTCTACGGCTTTGTG
GTCGTGCGAGACGAGGGAAGGAATTTGAAGGAGGCGTTTGCCCTGGAGGG
AGACTACTTCGACGATCGCAGCCCGCACCGGATGGCCGTTACATTCTCCA
AGCCACGAGGAGGGGGAGGGGGAGGGGGAGGAGGGGGAGGAGATCGATAC
GCCGGGAGTTCTGGGGGGTATAGCCGGGGCCGAAGTCCGTCTCCCGTGTA
CTCGCGTCGGCGAGGCCGGTCTCCCTCGCCCTCCGACCGTGAGGCACTAT
CGTCGCGGTCGGTCGCGTTCCCGCTCTCCCTACCGCTCTCGGTCTCGGGG
CCGACGACGCTCGCCGTACTAAGAAGAAAGGAGGCGGGAAGGGAGGTTTG
CATGGGCCCTAGATGTTGGAAGGGTGTGAAGAAGGAGAAAGAGGTGAGGG
CAAAGCTCGCGGGAAGAGGGCAAGAAGGAGACCGGTTCGCTTTCTCAGCC
CTGCAGGGCCCGTGCAAGGCGTGA
back to top

protein sequence of rna7645

>rna7645-protein ID=rna7645-protein|Name=rna7645|organism=Nannochloropsis gaditana|type=polypeptide|length=194bp
SLPPSRPSFLSPPFPFSFCPRLHLSLLPSLPPFFVRSLSSFGRHLTPYSF
ICDNLVEGADSRDAGPPLRFPLLTPAPPSAPPTPPLRHLLQGLKVAPGRQ
SKEARRPETGERRDRALMSAVPFSWPLSLLQLANPRLHTPPSFSPLSTRL
SPLLGGQAREGARGKRSQSQPSSRTRWGRRAGEESICPVESFLH
back to top

mRNA from alignment at CM002472.1:464151..464735-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7645 ID=rna7645|Name=rna7645|organism=Nannochloropsis gaditana|type=mRNA|length=585bp|location=Sequence derived from alignment at CM002472.1:464151..464735- (Nannochloropsis gaditana)
TCCCTCCCTCCCTCCCGGCCTTCCTTTCTTTCACCCCCGTTCCCTTTCTC
CTTCTGTCCCCGTCTTCACCTGTCGCTCCTCCCCTCTCTCCCTCCTTTCT
TCGTGCGAAGTCTCTCTTCCTTCGGTAGACACCTTACCCCTTACTCCTTC
ATATGCGACAACCTCGTCGAGGGTGCGGACTCTCGGGATGCTGGCCCGCC
TCTTCGTTTCCCTCTTCTCACCCCCGCCCCTCCCTCTGCCCCTCCCACCC
CACCCCTCAGGCATCTACTTCAAGGACTCAAAGTGGCGCCTGGCCGTCAA
AGTAAGGAGGCGCGAAGGCCAGAGACGGGGGAGAGGAGGGACAGGGCTCT
GATGTCGGCAGTACCCTTCTCTTGGCCCCTTTCCCTTCTTCAGTTAGCCA
ACCCCCGTTTGCATACCCCTCCCTCTTTCTCTCCTCTTTCCACCCGTCTG
TCTCCCCTCCTAGGCGGCCAAGCCCGTGAAGGAGCGCGAGGAAAGAGGTC
GCAGTCGCAGCCCTCCTCGCGGACGAGGTGGGGAAGGAGGGCAGGAGAAG
AGAGTATCTGCCCGGTCGAGTCATTTTTACATTGA
back to top

Coding sequence (CDS) from alignment at CM002472.1:464151..464735-

>rna7645 ID=rna7645|Name=rna7645|organism=Nannochloropsis gaditana|type=CDS|length=585bp|location=Sequence derived from alignment at CM002472.1:464151..464735- (Nannochloropsis gaditana)
TCCCTCCCTCCCTCCCGGCCTTCCTTTCTTTCACCCCCGTTCCCTTTCTC
CTTCTGTCCCCGTCTTCACCTGTCGCTCCTCCCCTCTCTCCCTCCTTTCT
TCGTGCGAAGTCTCTCTTCCTTCGGTAGACACCTTACCCCTTACTCCTTC
ATATGCGACAACCTCGTCGAGGGTGCGGACTCTCGGGATGCTGGCCCGCC
TCTTCGTTTCCCTCTTCTCACCCCCGCCCCTCCCTCTGCCCCTCCCACCC
CACCCCTCAGGCATCTACTTCAAGGACTCAAAGTGGCGCCTGGCCGTCAA
AGTAAGGAGGCGCGAAGGCCAGAGACGGGGGAGAGGAGGGACAGGGCTCT
GATGTCGGCAGTACCCTTCTCTTGGCCCCTTTCCCTTCTTCAGTTAGCCA
ACCCCCGTTTGCATACCCCTCCCTCTTTCTCTCCTCTTTCCACCCGTCTG
TCTCCCCTCCTAGGCGGCCAAGCCCGTGAAGGAGCGCGAGGAAAGAGGTC
GCAGTCGCAGCCCTCCTCGCGGACGAGGTGGGGAAGGAGGGCAGGAGAAG
AGAGTATCTGCCCGGTCGAGTCATTTTTACATTGA
back to top
Synonyms
Publications