rna7635, rna7635 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7635
Unique Name	rna7635
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	974
Alignment location	CM002472.1:435559..436640 +

Link to JBrowse

Properties


Property Name	Value
Product	yrinic acid -diamide mitochondrial precursor
Orig transcript id	gnl\|cribi\|Naga_101947g2.8857.mrna
Orig protein id	gnl\|cribi\|Naga_101947g2.8857
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002472.1	supercontig	CM002472.1:435559..436640 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101947g2	gene7394	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7635	rna7635-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23057.1	cds7615	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002472.1:435559..436640+
coding sequence from alignment at CM002472.1:435559..436640+

mRNA sequence

>rna7635 ID=rna7635|Name=rna7635|organism=Nannochloropsis gaditana|type=mRNA|length=974bp
ATGGAAAACAAGCCGTTGGTTGGAAGATGCGTGATTTGGCCTGGAGGAAT
GTGTGTGGGTGGAAACTGTGGGGGGATTTCGAGATCCTTGCCTCTGTTTT
GGTGCGGGCGACCTCCCGTCCCCCTTTGTCAGGACTGCCATGCCAAATGG
TTTAAGCTCCAGCCATCCTGTTTCTGCTTTATACTGCCTCTTACACCCTC
TCTCACAACATTTACAATTCATTCGTTCAATATTGTTGTCAGGCATTCTC
CGCAACTAGGCAAGTGTAGAAGGCACAATGCAATGTTGAGATTTGTGCCT
TCTCATACAACAAATAGTCAAGTTCGCGTCGCACTTAACAACAGCTTTAG
AACAAACCGGCTCATTTTAGGGTCCACTTGCCTGTCATTGTCCTCTCGAA
CTCCTTCAGCATCTCTCAAGACTATGGCTCCCTCCATCCTGGCCCTCGCA
GCGTCGGCCGGGAGCAATGTATTGGGGAATGAGAGGACCTTGCAGAAATT
GCAGGGCGCCCAGCTTTTCGTGGGAAGCGGGGTGGCTTTCCTCTGGTCCA
TGCGTCGATGGCAGGTAAAGAAAGTAGACATCTCAGAGGGCAGGAGGAGG
TTGCAGGGGAAGCGAGGAGGATGGAGTGAAGGGGAAGGAAGGAGAGATGC
TGAGCGGTCTTGCGGGCATGATAGCTGATGTGTGAGGTGCAGAAGATTGA
GACAACAATATATGACGACTAATATTTTCTGGACGGAGGCATGAACTCGC
GTGTAAATCTCGCGTGACTGCGATAGACAAGCCGGTCGTGCTTTCCAACG
ATTCCCACGTCCATCTTGGCTTACGCGTCCCTACGGAATGGCAGCGAGGG
CTTAGCGGGAAGGCTGGGTCGGGAGGGCAGGGAAGGGAGAGGAAAGAGAC
GAAGAAGAGTGGGATCTACACCCGTACCGGCGACAAGGGGACCTCGTCCC
TCTACAATGGCGAGGTAAAGGGAG

protein sequence of rna7635

>rna7635-protein ID=rna7635-protein|Name=rna7635|organism=Nannochloropsis gaditana|type=polypeptide|length=82bp
MDSRLTALKNFILPSGGLCSAHLHLARTICRRAERSVIPLVNSEQVDPEV
GIYLNRLSDFLFVAARWAAKSEGHEETVWVKG

mRNA from alignment at CM002472.1:435559..436640+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7635 ID=rna7635|Name=rna7635|organism=Nannochloropsis gaditana|type=mRNA|length=1082bp|location=Sequence derived from alignment at CM002472.1:435559..436640+ (Nannochloropsis gaditana)
CTCCCTCGTGCTTGCACCTCgctcgccccctctccccccccccatgaCCT
TGTTGTTTCGTGTATGATGGTCGTCGGGCTCCTCGCGAAGCTCTGAGGCA
CCCTGagcctccctgcttcccgccctcccttgctcccccccctcccgccc
gccagGTGGAGGAGTGGATCGATGACATGGACAGCCGTCTGACCGCTTTG
AAGAACTTCATACTCCCCTCGGGCGGACTGTGCAGCGCTCATCTTCACCT
GGcacggtgagggagggagggagggaaagacggagagggggaaggtggaa
gaaaaggagggagcaaagcCTGGCTGATTCCGTATTGTGACAGGACAATA
TGCCgaagggcggaaaggagcGTCATTCCGCTTGTGAACTCTGAGCAGGT
GGACCCTGAGGtaaggcctccctccctccctccttccttcattctgtccc
gccctttctccctccttccctctgtcccttcctggATCCCCCTTTGCTTC
CTTGGTAGCTTCCTCCGtatcatcttctcctccttttcatgccATGATTT
ATTTGAATGACGCTGCAGACGAGTCTTGACTGTCAAGGGCTGCCCGCTCG
ctacccctccttccgccctccctccctccctccctccccaggtGGGGATT
TATCTGAACCGCCTCTCGGATTTCTTGTTCGTGGCCGCCCGGTGGGCGGC
CAAGAGCGAGGGCCACGAGGAAACCGTGTGGGTGAAAGGCTGAGAAGAGG
cgccagggagggcgggagggagggcggggaggggagagagggcgcgTCGC
GGGTGTGAGTCGTacgggaaaaagagggagaggggaggaagagaggggtt
catggaaaaaaaatgcatgAAAGAcgcagaagaagggggacgggccacag
agggagagaggaagaagagagagcTTAAAGCAACGGAGTGTTAgagcaca
gggaggggaaatatCCATGTCGGGAGCACGATCATCCGGAAATTCGACGG
TTTTCTTTTCATGTTTAGAGGATGGCTTGCGGCAGTGCCTTTGTCTCAGA
CATCTCTCTTGTCCACcgaccgtcctcccttc

Coding sequence (CDS) from alignment at CM002472.1:435559..436640+

>rna7635 ID=rna7635|Name=rna7635|organism=Nannochloropsis gaditana|type=CDS|length=747bp|location=Sequence derived from alignment at CM002472.1:435559..436640+ (Nannochloropsis gaditana)
ATGGACAGCCGTCTGACCGCTTTGAAGAACTTCATACTCCCCTCGGGCGG
ACTGTGCAGCGCTCATCTTCACCTGGcacgGACAATATGCCgaagggcgg
aaaggagcGTCATTCCGCTTGTGAACTCTGAGCAGGTGGACCCTGAGgtG
GGGATTTATCTGAACCGCCTCTCGGATTTCTTGTTCGTGGCCGCCCGGTG
GGCGGCCAAGAGCGAGGGCCACGAGGAAACCGTGTGGGTGAAAGGCTGAA
TGGACAGCCGTCTGACCGCTTTGAAGAACTTCATACTCCCCTCGGGCGGA
CTGTGCAGCGCTCATCTTCACCTGGcacgGACAATATGCCgaagggcgga
aaggagcGTCATTCCGCTTGTGAACTCTGAGCAGGTGGACCCTGAGgtGG
GGATTTATCTGAACCGCCTCTCGGATTTCTTGTTCGTGGCCGCCCGGTGG
GCGGCCAAGAGCGAGGGCCACGAGGAAACCGTGTGGGTGAAAGGCTGAAT
GGACAGCCGTCTGACCGCTTTGAAGAACTTCATACTCCCCTCGGGCGGAC
TGTGCAGCGCTCATCTTCACCTGGcacgGACAATATGCCgaagggcggaa
aggagcGTCATTCCGCTTGTGAACTCTGAGCAGGTGGACCCTGAGgtGGG
GATTTATCTGAACCGCCTCTCGGATTTCTTGTTCGTGGCCGCCCGGTGGG
CGGCCAAGAGCGAGGGCCACGAGGAAACCGTGTGGGTGAAAGGCTGA

Synonyms

Publications