rna7633, rna7633 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7633
Unique Name	rna7633
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	537
Alignment location	CM002472.1:431894..433170 -

Link to JBrowse

Properties


Property Name	Value
Product	Nucleic acid-binding, OB-fold-like protein
Orig transcript id	gnl\|cribi\|Naga_100847g3.9575.mrna
Orig protein id	gnl\|cribi\|Naga_100847g3.9575
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002472.1	supercontig	CM002472.1:431894..433170 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100847g3	gene7392	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7633	rna7633-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23061.1	cds7613	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002472.1:431894..433170-
coding sequence from alignment at CM002472.1:431894..433170-

mRNA sequence

>rna7633 ID=rna7633|Name=rna7633|organism=Nannochloropsis gaditana|type=mRNA|length=537bp
ATGGAGAAGAGGGCGAGAGGGAGGGCGGCGGAGGAAAACGCAAGAAAAAC
GAAGAAAAACTCGTGGCTTCCGCCCTCCAACAGTTGCAAGACACGAATCT
GCCCACGGTCCGGCCACGAGAGCAGGAGTAGTGCCGGCGGGAGCAGCACG
AGCAGCAGCCGGACGACGGAAGACGAAGGGGAGAAGGAGATGGGCAGAGG
GCAAGGACTGGAAGGGGCGAGTCTCTGCCAGGCGGGGTCGGAGGAGAGTC
CTCTGAAGCGACGGCGTGGGAGTGTGCCCGGGCTGGGCCAAGCGCATCAA
AGTATCTCGGACCTCTCTGCGGTTACCTCGATTTCGGCGGCGACGTTTGC
GTCCTCTGTCCCCAAGACGTCGATCACACCCATGTCCTCCGTGGTGTACC
CAGAAAGCCCCGACAAAGCGGCCGGGAACGGGCTTTACCCAGGAAGGAGC
CAGCCCTTCGTGGCCCTTCCCTCCCCCGTCCCTCCCTTCCGGGGGACGGC
GGGGCCGGAGCCCATGGTAGAGGTGACGGGTTTGTAG

protein sequence of rna7633

>rna7633-protein ID=rna7633-protein|Name=rna7633|organism=Nannochloropsis gaditana|type=polypeptide|length=235bp
MAAPLPPNTSRLSAAAYPPSAVHVSTAPPSRPARYTKVDLLTPASVGHNL
VLRVLRILATFEKARVDGSTTKIAEIVVGDETGVITLRARNSQVEFFLKK
VQKEEEEEEKPCVIVLRNAGVSMYKGHMRLIVNKWGKISSYPDEVASTPP
PPADVLGTNDKSSVEYELVEQMAAKEGGESEEEGEGTEAHDLFNQLCHHQ
TSTIRSCISETIRCKNYLTGDQLNCRVVRINRRHW

mRNA from alignment at CM002472.1:431894..433170-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7633 ID=rna7633|Name=rna7633|organism=Nannochloropsis gaditana|type=mRNA|length=1277bp|location=Sequence derived from alignment at CM002472.1:431894..433170- (Nannochloropsis gaditana)
ATGGCCGCTCCTCTTCCTCCTAATACTTCTCGTCTCTCTGCAGCAGCTTA
TCCACCGTCTGCTGTGCATGTTTCAACCGCGCCACCTTCACGTCCCGCCC
GCTACACAAAGGTAGATATTCACTCCGCCCACCTTGCGAAGACGGAGTGG
CTGGCGTTACTCCACTTTTCGAATACTTTTATTATTACCATTTATTGCGC
AACGTTATTTTAAAGCTCGTCTTCTCTTTTTTACCTTTCACTATCAGGTT
GACCTCCTGACGCCTGCCAGTGTAGGACACAACTTGGTTTTGAGGGTTTT
GCGGATTTTAGCCACCTTCGAGAAGGCCCGCGTGGATGGAAGCACAACGA
AGTAATGAAAAAAAATCTAACTAACCGGGGAATAAGGTGTAAATGCAGCC
GACTTCCACCCAACCCTGTTCTTTGTTTCTTGTTCCCCGCCTCCTTTCCT
CGCTCCTTCAGAATTGCCGAGATAGTCGTCGGAGACGAGACCGGGGTGAT
CACTCTTCGAGCACGGAACAGCCAAGTAGAGTTCTTCCTGAAAAAAGTGC
AGAAAGAAGAGGAAGAGGAGGAGAAGCCCTGTGTCATTGTCCTGCGCAAT
GCCGGCGTCTCCATGTACAAAGGACACATGCGTCTCATCGTCAACAAATG
GGGCAAAATCTCCAGGTCCCTGTCTCTCCTCCCGCCATTGATCCTACCTT
CACCTCTCCTTCGCCTTGATCCAAATTACCACCTTCTTCTCCCCGCTTTT
CCTTTTCTCATGATTTTCCCCTCTCAACCGCTCTCCCCCACCTTAGCTAC
CCGGACGAGGTTGCGTCGACGCCTCCACCTCCTGCGGACGTCCTAGGCAC
CAATGACAAGTCCAGCGTAGAATACGAGCTTGTGGAACAGATGGCGGCAA
AGGAAGGGGGAGAAAGCGAGGAAGAGGGGGAGGGAACAGAAGCGTAAGCA
AGCTTGTACTTTTGAAGGCCCATGCCTGGTAAGGAAGAGGAAAGGGTAGG
AAACAGGAGAGGAAGAGGTGGGACGACGGAAGTGGAACGGAATCGACAGA
CAGGCAAAGCAGGGAAAATGACAGCAAACGGATAGGAAGGAAAGAAAAGA
GGGGGAGGGTATTCTCAACCGAGATGATACAAGAGACACGATCTTTTTAA
TCAGCTTTGTCATCATCAGACCAGTACTATCAGGAGCTGTATCAGTGAAA
CAATCCGATGCAAAAATTACTTGACAGGGGATCAGCTTAATTGCAGGGTC
GTCAGAATCAACAGAAGACATTGGTAG

Coding sequence (CDS) from alignment at CM002472.1:431894..433170-

>rna7633 ID=rna7633|Name=rna7633|organism=Nannochloropsis gaditana|type=CDS|length=3540bp|location=Sequence derived from alignment at CM002472.1:431894..433170- (Nannochloropsis gaditana)
ACACGATCTTTTTAATCAGCTTTGTCATCATCAGACCAGTACTATCAGGA
GCTGTATCAGTGAAACAATCCGATGCAAAAATTACTTGACAGGGGATCAG
CTTAATTGCAGGGTCGTCAGAATCAACAGAAGACATTGGTAGCTACCCGG
ACGAGGTTGCGTCGACGCCTCCACCTCCTGCGGACGTCCTAGGCACCAAT
GACAAGTCCAGCGTAGAATACGAGCTTGTGGAACAGATGGCGGCAAAGGA
AGGGGGAGAAAGCGAGGAAGAGGGGGAGGGAACAGAAGCAATTGCCGAGA
TAGTCGTCGGAGACGAGACCGGGGTGATCACTCTTCGAGCACGGAACAGC
CAAGTAGAGTTCTTCCTGAAAAAAGTGCAGAAAGAAGAGGAAGAGGAGGA
GAAGCCCTGTGTCATTGTCCTGCGCAATGCCGGCGTCTCCATGTACAAAG
GACACATGCGTCTCATCGTCAACAAATGGGGCAAAATCTCCAGGTTGACC
TCCTGACGCCTGCCAGTGTAGGACACAACTTGGTTTTGAGGGTTTTGCGG
ATTTTAGCCACCTTCGAGAAGGCCCGCGTGGATGGAAGCACAACGAAATG
GCCGCTCCTCTTCCTCCTAATACTTCTCGTCTCTCTGCAGCAGCTTATCC
ACCGTCTGCTGTGCATGTTTCAACCGCGCCACCTTCACGTCCCGCCCGCT
ACACAAAGACACGATCTTTTTAATCAGCTTTGTCATCATCAGACCAGTAC
TATCAGGAGCTGTATCAGTGAAACAATCCGATGCAAAAATTACTTGACAG
GGGATCAGCTTAATTGCAGGGTCGTCAGAATCAACAGAAGACATTGGTAG
CTACCCGGACGAGGTTGCGTCGACGCCTCCACCTCCTGCGGACGTCCTAG
GCACCAATGACAAGTCCAGCGTAGAATACGAGCTTGTGGAACAGATGGCG
GCAAAGGAAGGGGGAGAAAGCGAGGAAGAGGGGGAGGGAACAGAAGCAAT
TGCCGAGATAGTCGTCGGAGACGAGACCGGGGTGATCACTCTTCGAGCAC
GGAACAGCCAAGTAGAGTTCTTCCTGAAAAAAGTGCAGAAAGAAGAGGAA
GAGGAGGAGAAGCCCTGTGTCATTGTCCTGCGCAATGCCGGCGTCTCCAT
GTACAAAGGACACATGCGTCTCATCGTCAACAAATGGGGCAAAATCTCCA
GGTTGACCTCCTGACGCCTGCCAGTGTAGGACACAACTTGGTTTTGAGGG
TTTTGCGGATTTTAGCCACCTTCGAGAAGGCCCGCGTGGATGGAAGCACA
ACGAAATGGCCGCTCCTCTTCCTCCTAATACTTCTCGTCTCTCTGCAGCA
GCTTATCCACCGTCTGCTGTGCATGTTTCAACCGCGCCACCTTCACGTCC
CGCCCGCTACACAAAGACACGATCTTTTTAATCAGCTTTGTCATCATCAG
ACCAGTACTATCAGGAGCTGTATCAGTGAAACAATCCGATGCAAAAATTA
CTTGACAGGGGATCAGCTTAATTGCAGGGTCGTCAGAATCAACAGAAGAC
ATTGGTAGCTACCCGGACGAGGTTGCGTCGACGCCTCCACCTCCTGCGGA
CGTCCTAGGCACCAATGACAAGTCCAGCGTAGAATACGAGCTTGTGGAAC
AGATGGCGGCAAAGGAAGGGGGAGAAAGCGAGGAAGAGGGGGAGGGAACA
GAAGCAATTGCCGAGATAGTCGTCGGAGACGAGACCGGGGTGATCACTCT
TCGAGCACGGAACAGCCAAGTAGAGTTCTTCCTGAAAAAAGTGCAGAAAG
AAGAGGAAGAGGAGGAGAAGCCCTGTGTCATTGTCCTGCGCAATGCCGGC
GTCTCCATGTACAAAGGACACATGCGTCTCATCGTCAACAAATGGGGCAA
AATCTCCAGGTTGACCTCCTGACGCCTGCCAGTGTAGGACACAACTTGGT
TTTGAGGGTTTTGCGGATTTTAGCCACCTTCGAGAAGGCCCGCGTGGATG
GAAGCACAACGAAATGGCCGCTCCTCTTCCTCCTAATACTTCTCGTCTCT
CTGCAGCAGCTTATCCACCGTCTGCTGTGCATGTTTCAACCGCGCCACCT
TCACGTCCCGCCCGCTACACAAAGACACGATCTTTTTAATCAGCTTTGTC
ATCATCAGACCAGTACTATCAGGAGCTGTATCAGTGAAACAATCCGATGC
AAAAATTACTTGACAGGGGATCAGCTTAATTGCAGGGTCGTCAGAATCAA
CAGAAGACATTGGTAGCTACCCGGACGAGGTTGCGTCGACGCCTCCACCT
CCTGCGGACGTCCTAGGCACCAATGACAAGTCCAGCGTAGAATACGAGCT
TGTGGAACAGATGGCGGCAAAGGAAGGGGGAGAAAGCGAGGAAGAGGGGG
AGGGAACAGAAGCAATTGCCGAGATAGTCGTCGGAGACGAGACCGGGGTG
ATCACTCTTCGAGCACGGAACAGCCAAGTAGAGTTCTTCCTGAAAAAAGT
GCAGAAAGAAGAGGAAGAGGAGGAGAAGCCCTGTGTCATTGTCCTGCGCA
ATGCCGGCGTCTCCATGTACAAAGGACACATGCGTCTCATCGTCAACAAA
TGGGGCAAAATCTCCAGGTTGACCTCCTGACGCCTGCCAGTGTAGGACAC
AACTTGGTTTTGAGGGTTTTGCGGATTTTAGCCACCTTCGAGAAGGCCCG
CGTGGATGGAAGCACAACGAAATGGCCGCTCCTCTTCCTCCTAATACTTC
TCGTCTCTCTGCAGCAGCTTATCCACCGTCTGCTGTGCATGTTTCAACCG
CGCCACCTTCACGTCCCGCCCGCTACACAAAGACACGATCTTTTTAATCA
GCTTTGTCATCATCAGACCAGTACTATCAGGAGCTGTATCAGTGAAACAA
TCCGATGCAAAAATTACTTGACAGGGGATCAGCTTAATTGCAGGGTCGTC
AGAATCAACAGAAGACATTGGTAGCTACCCGGACGAGGTTGCGTCGACGC
CTCCACCTCCTGCGGACGTCCTAGGCACCAATGACAAGTCCAGCGTAGAA
TACGAGCTTGTGGAACAGATGGCGGCAAAGGAAGGGGGAGAAAGCGAGGA
AGAGGGGGAGGGAACAGAAGCAATTGCCGAGATAGTCGTCGGAGACGAGA
CCGGGGTGATCACTCTTCGAGCACGGAACAGCCAAGTAGAGTTCTTCCTG
AAAAAAGTGCAGAAAGAAGAGGAAGAGGAGGAGAAGCCCTGTGTCATTGT
CCTGCGCAATGCCGGCGTCTCCATGTACAAAGGACACATGCGTCTCATCG
TCAACAAATGGGGCAAAATCTCCAGGTTGACCTCCTGACGCCTGCCAGTG
TAGGACACAACTTGGTTTTGAGGGTTTTGCGGATTTTAGCCACCTTCGAG
AAGGCCCGCGTGGATGGAAGCACAACGAAATGGCCGCTCCTCTTCCTCCT
AATACTTCTCGTCTCTCTGCAGCAGCTTATCCACCGTCTGCTGTGCATGT
TTCAACCGCGCCACCTTCACGTCCCGCCCGCTACACAAAG

Synonyms

Publications