EWM23061.1, cds7613 (CDS) Nannochloropsis gaditana

Overview
NameEWM23061.1
Unique Namecds7613
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:433060..433170 -
Alignment locationCM002472.1:432820..432923 -
Alignment locationCM002472.1:432506..432709 -
Alignment locationCM002472.1:432228..432374 -
Alignment locationCM002472.1:431894..432035 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23061.1
ProductNucleic acid-binding, OB-fold-like protein
Orig transcript idgnl|cribi|Naga_100847g3.9575.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:433060..433170 -
CM002472.1supercontigCM002472.1:432820..432923 -
CM002472.1supercontigCM002472.1:432506..432709 -
CM002472.1supercontigCM002472.1:432228..432374 -
CM002472.1supercontigCM002472.1:431894..432035 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
Homology
BLAST of EWM23061.1 vs. NCBI_GenBank
Match: gi|585103876|gb|EWM23061.1| (Nucleic acid-binding, OB-fold-like protein [Nannochloropsis gaditana])

HSP 1 Score: 487.649 bits (1254), Expect = 1.666e-174
Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 0
Query:    1 MAAPLPPNTSRLSAAAYPPSAVHVSTAPPSRPARYTKVDLLTPASVGHNLVLRVLRILATFEKARVDGSTTKIAEIVVGDETGVITLRARNSQVEFFLKKVQKEEEEEEKPCVIVLRNAGVSMYKGHMRLIVNKWGKISSYPDEVASTPPPPADVLGTNDKSSVEYELVEQMAAKEGGESEEEGEGTEAHDLFNQLCHHQTSTIRSCISETIRCKNYLTGDQLNCRVVRINRRHW 235
            MAAPLPPNTSRLSAAAYPPSAVHVSTAPPSRPARYTKVDLLTPASVGHNLVLRVLRILATFEKARVDGSTTKIAEIVVGDETGVITLRARNSQVEFFLKKVQKEEEEEEKPCVIVLRNAGVSMYKGHMRLIVNKWGKISSYPDEVASTPPPPADVLGTNDKSSVEYELVEQMAAKEGGESEEEGEGTEAHDLFNQLCHHQTSTIRSCISETIRCKNYLTGDQLNCRVVRINRRHW
Sbjct:    1 MAAPLPPNTSRLSAAAYPPSAVHVSTAPPSRPARYTKVDLLTPASVGHNLVLRVLRILATFEKARVDGSTTKIAEIVVGDETGVITLRARNSQVEFFLKKVQKEEEEEEKPCVIVLRNAGVSMYKGHMRLIVNKWGKISSYPDEVASTPPPPADVLGTNDKSSVEYELVEQMAAKEGGESEEEGEGTEAHDLFNQLCHHQTSTIRSCISETIRCKNYLTGDQLNCRVVRINRRHW 235          
BLAST of EWM23061.1 vs. NCBI_GenBank
Match: gi|695429703|ref|XP_009530258.1| (hypothetical protein PHYSODRAFT_546681 [Phytophthora sojae] >gi|348673010|gb|EGZ12829.1| hypothetical protein PHYSODRAFT_546681 [Phytophthora sojae])

HSP 1 Score: 134.42 bits (337), Expect = 2.480e-36
Identity = 72/146 (49.32%), Postives = 93/146 (63.70%), Query Frame = 0
Query:   31 RPARYTKVDLLTPASVGHNLVLRVLRILATFEKARVDGSTTKIAEIVVGDETGVITLRARNSQVEFFLKKVQKEEEEEEKPCVIVLRNAGVSMYKGHMRLIVNKWGKISSYPDEVASTPPPPADVLGTNDKSSVEYELVEQMAAKE 176
            R A Y KV  LTP S GHNLVL+V+ I  T EK R DG+ ++IAE V+ DETG +T  ARN Q++       KEE       V+V+RN+   ++ G MRL V +WGK+S +PD +ASTPPPP  V   N+ S+VEYELV    A+E
Sbjct:   12 RRATYVKVQDLTPGSQGHNLVLQVVSIAPTVEKKRYDGTISRIAEAVMADETGCVTFTARNDQIDML-----KEE------LVVVVRNSNADIFNGFMRLNVTQWGKLSLHPDGIASTPPPPPSVNTDNNISAVEYELVTVDDAEE 146          
BLAST of EWM23061.1 vs. NCBI_GenBank
Match: gi|675181231|ref|XP_008899500.1| (hypothetical protein PPTG_07086 [Phytophthora parasitica INRA-310] >gi|566032115|gb|ETI55026.1| hypothetical protein F443_02260 [Phytophthora parasitica P1569] >gi|567969784|gb|ETK94853.1| hypothetical protein L915_02168 [Phytophthora parasitica] >gi|567998169|gb|ETL48246.1| hypothetical protein L916_02131 [Phytophthora parasitica] >gi|568027392|gb|ETM01347.1| hypothetical protein L917_02059 [Phytophthora parasitica] >gi|568057886|gb|ETM54534.1| hypothetical protein L914_02152 [Phytophthora parasitica] >gi|568100130|gb|ETN14829.1| hypothetical protein PPTG_07086 [Phytophthora parasitica INRA-310] >gi|570335817|gb|ETO83765.1| hypothetical protein F444_02265 [Phytophthora parasitica P1976] >gi|570959849|gb|ETP24828.1| hypothetical protein F441_02235 [Phytophthora parasitica CJ01A1] >gi|570996163|gb|ETP52829.1| hypothetical protein F442_02215 [Phytophthora parasitica P10297] >gi|970616914|gb|KUF65048.1| hypothetical protein AM587_10008382 [Phytophthora nicotianae])

HSP 1 Score: 132.494 bits (332), Expect = 1.611e-35
Identity = 69/146 (47.26%), Postives = 91/146 (62.33%), Query Frame = 0
Query:   31 RPARYTKVDLLTPASVGHNLVLRVLRILATFEKARVDGSTTKIAEIVVGDETGVITLRARNSQVEFFLKKVQKEEEEEEKPCVIVLRNAGVSMYKGHMRLIVNKWGKISSYPDEVASTPPPPADVLGTNDKSSVEYELVEQMAAKE 176
            R A Y KV  LTP S GHNLVL+V+ I  T EK R DG+ ++IAE V+ DETG +T  ARN Q++             ++  V+V+RN+   ++ G MRL V +WGK+S +PD VASTPPPP  +   N+ S+VEYELV    A E
Sbjct:   12 RRATYVKVQDLTPGSQGHNLVLQVVSIAPTVEKKRYDGTISRIAEAVLADETGCVTFTARNDQIDML-----------KEGLVVVVRNSNADIFNGFMRLNVTQWGKLSPHPDGVASTPPPPPSINTDNNISAVEYELVTVDDADE 146          
BLAST of EWM23061.1 vs. NCBI_GenBank
Match: gi|953490690|emb|CEG46344.1| (RFA1, RPA1, rpa [Plasmopara halstedii])

HSP 1 Score: 132.109 bits (331), Expect = 1.978e-35
Identity = 67/144 (46.53%), Postives = 89/144 (61.81%), Query Frame = 0
Query:   33 ARYTKVDLLTPASVGHNLVLRVLRILATFEKARVDGSTTKIAEIVVGDETGVITLRARNSQVEFFLKKVQKEEEEEEKPCVIVLRNAGVSMYKGHMRLIVNKWGKISSYPDEVASTPPPPADVLGTNDKSSVEYELVEQMAAKE 176
            A Y K   LTP S GHNLVL+V+ + AT EK R DGS ++IAE+V+ DETG +T  ARN Q++             ++  V+VLRN+   +Y G MRL V  WGK+S +PD + STPPPP  +   N+ S++EYELV    A E
Sbjct:   14 ANYVKAKDLTPGSHGHNLVLQVVSVAATVEKKRYDGSVSRIAEVVLADETGCVTFTARNDQIDML-----------KEGLVVVLRNSNADIYNGFMRLNVTLWGKLSLHPDGIESTPPPPPSINTDNNISAIEYELVTVNDADE 146          
BLAST of EWM23061.1 vs. NCBI_GenBank
Match: gi|325183338|emb|CCA17796.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 129.028 bits (323), Expect = 3.422e-34
Identity = 66/146 (45.21%), Postives = 93/146 (63.70%), Query Frame = 0
Query:   31 RPARYTKVDLLTPASVGHNLVLRVLRILATFEKARVDGSTTKIAEIVVGDETGVITLRARNSQVEFFLKKVQKEEEEEEKPCVIVLRNAGVSMYKGHMRLIVNKWGKISSYPDEVASTPPPPADVLGTNDKSSVEYELVEQMAAKE 176
            RPA Y KV+ +TP + GHNLVLR++ +     K R DG+  ++AE VVGDETG++TL ARN Q++       KE  +      +V+RN    +Y G++RL V +WGKI+ YPD V STP PP ++   ND S++EYELV    ++E
Sbjct:   11 RPASYVKVEDVTPGTHGHNLVLRIVSVTPLVAKKRQDGNAPRMAEAVVGDETGIVTLTARNEQIDSL-----KEGGD------VVIRNCNADVYNGYLRLNVTRWGKITPYPDGVDSTPNPPTEINMENDFSAIEYELVTVEGSEE 145          
BLAST of EWM23061.1 vs. NCBI_GenBank
Match: gi|301102097|ref|XP_002900136.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262102288|gb|EEY60340.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 126.716 bits (317), Expect = 2.176e-33
Identity = 68/146 (46.58%), Postives = 91/146 (62.33%), Query Frame = 0
Query:   31 RPARYTKVDLLTPASVGHNLVLRVLRILATFEKARVDGSTTKIAEIVVGDETGVITLRARNSQVEFFLKKVQKEEEEEEKPCVIVLRNAGVSMYKGHMRLIVNKWGKISSYPDEVASTPPPPADVLGTNDKSSVEYELVEQMAAKE 176
            R A Y KV  LTP S GHNLVL+V+ I  T EK R DG+ ++IAE V+ DETG +TL ARN Q++   + +            +V+RN+   ++ G MRL V +WGK+S +PD VASTPP P  V   ++ S+VEYELV    A+E
Sbjct:   12 RRATYVKVQDLTPGSQGHNLVLQVVSIAPTVEKKRYDGTISRIAEAVLADETGCVTLTARNDQIDMLKEGLD-----------VVVRNSNADIFNGFMRLNVTQWGKLSPHPDGVASTPPAPPKVNTDSNISAVEYELVTVDDAEE 146          
BLAST of EWM23061.1 vs. NCBI_GenBank
Match: gi|669169201|ref|XP_008619949.1| (hypothetical protein SDRG_15551 [Saprolegnia diclina VS20] >gi|530728369|gb|EQC26611.1| hypothetical protein SDRG_15551 [Saprolegnia diclina VS20])

HSP 1 Score: 122.865 bits (307), Expect = 6.728e-32
Identity = 64/141 (45.39%), Postives = 90/141 (63.83%), Query Frame = 0
Query:   29 PSRPARYTKVDLLTPASVGHNLVLRVLRILATFEKARVDGSTTKIAEIVVGDETGVITLRARNSQVEFFLKKVQKEEEEEEKPCVIVLRNAGVSMYKGHMRLIVNKWGKISSYPDEVASTPPPPADVLGTNDKSSVEYELV 169
            P R A Y KV  L P + GHNLV RVL      EK + DG+T++IAE+++GDETG I + A N Q++ F+  V +          +V+RNA V +++G  RL V+KWGK++S+PD + STP  P  VL  N+ S++EYELV
Sbjct:    4 PLRTATYVKVKDLVPGTHGHNLVARVLSAEIISEKVQADGTTSRIAEVLIGDETGTIIVSAWNEQIDLFI--VGRN---------VVVRNADVGVHRGFARLRVSKWGKLASHPDGIKSTPKVPGKVLTENNMSAIEYELV 133          
BLAST of EWM23061.1 vs. NCBI_GenBank
Match: gi|635369432|emb|CCI42363.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 132.494 bits (332), Expect = 6.808e-32
Identity = 71/152 (46.71%), Postives = 96/152 (63.16%), Query Frame = 0
Query:   31 RPARYTKVDLLTPASVGHNLVLRVLRILATFEKARVDGSTTKIAEIVVGDETGVITLRARNSQVEFFLKKVQKEEEEEEKPCVIVLRNAGVSMYKGHMRLIVNKWGKISSYPDEVASTPPPPADVLGTNDKSSVEYELVEQMAAKEGGESEE 182
            RPA Y KV+ +TP + GHNLVLR++ +     K R DG+  ++AE VVGDETG++TL ARN Q++       KE  +      IV+RN    +Y G++RL V +WGKI+ YPD VASTP PP ++   ND S++EYELV      EG E E+
Sbjct:  531 RPASYVKVEDVTPGTHGHNLVLRIVSVTPLEAKKRQDGNAPRMAEAVVGDETGIVTLTARNEQIDSL-----KEGSD------IVIRNCNADVYNGYLRLNVTRWGKITPYPDGVASTPKPPTEIKMENDFSAIEYELV----TVEGSEEED 667          
BLAST of EWM23061.1 vs. NCBI_GenBank
Match: gi|698795772|ref|XP_009830915.1| (hypothetical protein H257_07175 [Aphanomyces astaci] >gi|574114491|gb|ETV79979.1| hypothetical protein H257_07175 [Aphanomyces astaci])

HSP 1 Score: 120.939 bits (302), Expect = 5.988e-31
Identity = 66/146 (45.21%), Postives = 87/146 (59.59%), Query Frame = 0
Query:   24 VSTAPPSRPARYTKVDLLTPASVGHNLVLRVLRILATFEKARVDGSTTKIAEIVVGDETGVITLRARNSQVEFFLKKVQKEEEEEEKPCVIVLRNAGVSMYKGHMRLIVNKWGKISSYPDEVASTPPPPADVLGTNDKSSVEYELV 169
            V+T  P R A Y KV  LTPA+ GH LV++V  +    EK R DGS  +I E  VGDETG + L ARN Q++             +   V+V+RNA   +Y G +RL V +WGKI+ +PD +ASTP  P+ +   N+ SSVEYELV
Sbjct:    4 VNTKKPLRRATYVKVKDLTPATKGHCLVVQVYALGHVTEKPRYDGSVVRIVEATVGDETGTVVLSARNGQIQLL-----------DVGRVLVIRNANADVYNGFLRLNVTQWGKIAPHPDGIASTPNAPSSINTVNNISSVEYELV 138          
BLAST of EWM23061.1 vs. NCBI_GenBank
Match: gi|673045115|ref|XP_008876518.1| (hypothetical protein H310_11573 [Aphanomyces invadans] >gi|574467906|gb|ETV94927.1| hypothetical protein H310_11573 [Aphanomyces invadans])

HSP 1 Score: 120.168 bits (300), Expect = 9.312e-31
Identity = 69/156 (44.23%), Postives = 91/156 (58.33%), Query Frame = 0
Query:   24 VSTAPPSRPARYTKVDLLTPASVGHNLVLRVLRILATFEKARVDGSTTKIAEIVVGDETGVITLRARNSQVEFFLKKVQKEEEEEEKPCVIVLRNAGVSMYKGHMRLIVNKWGKISSYPDEVASTPPPPADVLGTNDKSSVEYELV--EQMAAKEG 177
            V+T  P R A Y KV  L PA+ GH LV++V  I    EK R+DGS  +I E  VGDETG + L ARN Q++             E   V+V+RNA   +Y G +RL V +WGKI+ +PD +ASTP  P  V  +N+ S +EYELV  E +  +EG
Sbjct:    4 VNTKKPLRRATYVKVKDLAPATKGHCLVVQVHAIDPATEKTRIDGSIVRIVEATVGDETGTVVLNARNEQIKLV-----------EVGRVLVIRNASADVYNGFLRLNVTQWGKIAPHPDGIASTPHAPQSVNTSNNVSGIEYELVPAEDVDHEEG 148          
The following BLAST results are available for this feature:
BLAST of EWM23061.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103876|gb|EWM23061.1|1.666e-174100.00Nucleic acid-binding, OB-fold-like protein [Nannoc... [more]
gi|695429703|ref|XP_009530258.1|2.480e-3649.32hypothetical protein PHYSODRAFT_546681 [Phytophtho... [more]
gi|675181231|ref|XP_008899500.1|1.611e-3547.26hypothetical protein PPTG_07086 [Phytophthora para... [more]
gi|953490690|emb|CEG46344.1|1.978e-3546.53RFA1, RPA1, rpa [Plasmopara halstedii][more]
gi|325183338|emb|CCA17796.1|3.422e-3445.21conserved hypothetical protein [Albugo laibachii N... [more]
gi|301102097|ref|XP_002900136.1|2.176e-3346.58conserved hypothetical protein [Phytophthora infes... [more]
gi|669169201|ref|XP_008619949.1|6.728e-3245.39hypothetical protein SDRG_15551 [Saprolegnia dicli... [more]
gi|635369432|emb|CCI42363.1|6.808e-3246.71unnamed protein product [Albugo candida][more]
gi|698795772|ref|XP_009830915.1|5.988e-3145.21hypothetical protein H257_07175 [Aphanomyces astac... [more]
gi|673045115|ref|XP_008876518.1|9.312e-3144.23hypothetical protein H310_11573 [Aphanomyces invad... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7633rna7633Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications