EWM23061.1, cds7613 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23061.1 vs. NCBI_GenBank
Match: gi|585103876|gb|EWM23061.1| (Nucleic acid-binding, OB-fold-like protein [Nannochloropsis gaditana]) HSP 1 Score: 487.649 bits (1254), Expect = 1.666e-174 Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 0
Query: 1 MAAPLPPNTSRLSAAAYPPSAVHVSTAPPSRPARYTKVDLLTPASVGHNLVLRVLRILATFEKARVDGSTTKIAEIVVGDETGVITLRARNSQVEFFLKKVQKEEEEEEKPCVIVLRNAGVSMYKGHMRLIVNKWGKISSYPDEVASTPPPPADVLGTNDKSSVEYELVEQMAAKEGGESEEEGEGTEAHDLFNQLCHHQTSTIRSCISETIRCKNYLTGDQLNCRVVRINRRHW 235
MAAPLPPNTSRLSAAAYPPSAVHVSTAPPSRPARYTKVDLLTPASVGHNLVLRVLRILATFEKARVDGSTTKIAEIVVGDETGVITLRARNSQVEFFLKKVQKEEEEEEKPCVIVLRNAGVSMYKGHMRLIVNKWGKISSYPDEVASTPPPPADVLGTNDKSSVEYELVEQMAAKEGGESEEEGEGTEAHDLFNQLCHHQTSTIRSCISETIRCKNYLTGDQLNCRVVRINRRHW
Sbjct: 1 MAAPLPPNTSRLSAAAYPPSAVHVSTAPPSRPARYTKVDLLTPASVGHNLVLRVLRILATFEKARVDGSTTKIAEIVVGDETGVITLRARNSQVEFFLKKVQKEEEEEEKPCVIVLRNAGVSMYKGHMRLIVNKWGKISSYPDEVASTPPPPADVLGTNDKSSVEYELVEQMAAKEGGESEEEGEGTEAHDLFNQLCHHQTSTIRSCISETIRCKNYLTGDQLNCRVVRINRRHW 235
BLAST of EWM23061.1 vs. NCBI_GenBank
Match: gi|695429703|ref|XP_009530258.1| (hypothetical protein PHYSODRAFT_546681 [Phytophthora sojae] >gi|348673010|gb|EGZ12829.1| hypothetical protein PHYSODRAFT_546681 [Phytophthora sojae]) HSP 1 Score: 134.42 bits (337), Expect = 2.480e-36 Identity = 72/146 (49.32%), Postives = 93/146 (63.70%), Query Frame = 0
Query: 31 RPARYTKVDLLTPASVGHNLVLRVLRILATFEKARVDGSTTKIAEIVVGDETGVITLRARNSQVEFFLKKVQKEEEEEEKPCVIVLRNAGVSMYKGHMRLIVNKWGKISSYPDEVASTPPPPADVLGTNDKSSVEYELVEQMAAKE 176
R A Y KV LTP S GHNLVL+V+ I T EK R DG+ ++IAE V+ DETG +T ARN Q++ KEE V+V+RN+ ++ G MRL V +WGK+S +PD +ASTPPPP V N+ S+VEYELV A+E
Sbjct: 12 RRATYVKVQDLTPGSQGHNLVLQVVSIAPTVEKKRYDGTISRIAEAVMADETGCVTFTARNDQIDML-----KEE------LVVVVRNSNADIFNGFMRLNVTQWGKLSLHPDGIASTPPPPPSVNTDNNISAVEYELVTVDDAEE 146
BLAST of EWM23061.1 vs. NCBI_GenBank
Match: gi|675181231|ref|XP_008899500.1| (hypothetical protein PPTG_07086 [Phytophthora parasitica INRA-310] >gi|566032115|gb|ETI55026.1| hypothetical protein F443_02260 [Phytophthora parasitica P1569] >gi|567969784|gb|ETK94853.1| hypothetical protein L915_02168 [Phytophthora parasitica] >gi|567998169|gb|ETL48246.1| hypothetical protein L916_02131 [Phytophthora parasitica] >gi|568027392|gb|ETM01347.1| hypothetical protein L917_02059 [Phytophthora parasitica] >gi|568057886|gb|ETM54534.1| hypothetical protein L914_02152 [Phytophthora parasitica] >gi|568100130|gb|ETN14829.1| hypothetical protein PPTG_07086 [Phytophthora parasitica INRA-310] >gi|570335817|gb|ETO83765.1| hypothetical protein F444_02265 [Phytophthora parasitica P1976] >gi|570959849|gb|ETP24828.1| hypothetical protein F441_02235 [Phytophthora parasitica CJ01A1] >gi|570996163|gb|ETP52829.1| hypothetical protein F442_02215 [Phytophthora parasitica P10297] >gi|970616914|gb|KUF65048.1| hypothetical protein AM587_10008382 [Phytophthora nicotianae]) HSP 1 Score: 132.494 bits (332), Expect = 1.611e-35 Identity = 69/146 (47.26%), Postives = 91/146 (62.33%), Query Frame = 0
Query: 31 RPARYTKVDLLTPASVGHNLVLRVLRILATFEKARVDGSTTKIAEIVVGDETGVITLRARNSQVEFFLKKVQKEEEEEEKPCVIVLRNAGVSMYKGHMRLIVNKWGKISSYPDEVASTPPPPADVLGTNDKSSVEYELVEQMAAKE 176
R A Y KV LTP S GHNLVL+V+ I T EK R DG+ ++IAE V+ DETG +T ARN Q++ ++ V+V+RN+ ++ G MRL V +WGK+S +PD VASTPPPP + N+ S+VEYELV A E
Sbjct: 12 RRATYVKVQDLTPGSQGHNLVLQVVSIAPTVEKKRYDGTISRIAEAVLADETGCVTFTARNDQIDML-----------KEGLVVVVRNSNADIFNGFMRLNVTQWGKLSPHPDGVASTPPPPPSINTDNNISAVEYELVTVDDADE 146
BLAST of EWM23061.1 vs. NCBI_GenBank
Match: gi|953490690|emb|CEG46344.1| (RFA1, RPA1, rpa [Plasmopara halstedii]) HSP 1 Score: 132.109 bits (331), Expect = 1.978e-35 Identity = 67/144 (46.53%), Postives = 89/144 (61.81%), Query Frame = 0
Query: 33 ARYTKVDLLTPASVGHNLVLRVLRILATFEKARVDGSTTKIAEIVVGDETGVITLRARNSQVEFFLKKVQKEEEEEEKPCVIVLRNAGVSMYKGHMRLIVNKWGKISSYPDEVASTPPPPADVLGTNDKSSVEYELVEQMAAKE 176
A Y K LTP S GHNLVL+V+ + AT EK R DGS ++IAE+V+ DETG +T ARN Q++ ++ V+VLRN+ +Y G MRL V WGK+S +PD + STPPPP + N+ S++EYELV A E
Sbjct: 14 ANYVKAKDLTPGSHGHNLVLQVVSVAATVEKKRYDGSVSRIAEVVLADETGCVTFTARNDQIDML-----------KEGLVVVLRNSNADIYNGFMRLNVTLWGKLSLHPDGIESTPPPPPSINTDNNISAIEYELVTVNDADE 146
BLAST of EWM23061.1 vs. NCBI_GenBank
Match: gi|325183338|emb|CCA17796.1| (conserved hypothetical protein [Albugo laibachii Nc14]) HSP 1 Score: 129.028 bits (323), Expect = 3.422e-34 Identity = 66/146 (45.21%), Postives = 93/146 (63.70%), Query Frame = 0
Query: 31 RPARYTKVDLLTPASVGHNLVLRVLRILATFEKARVDGSTTKIAEIVVGDETGVITLRARNSQVEFFLKKVQKEEEEEEKPCVIVLRNAGVSMYKGHMRLIVNKWGKISSYPDEVASTPPPPADVLGTNDKSSVEYELVEQMAAKE 176
RPA Y KV+ +TP + GHNLVLR++ + K R DG+ ++AE VVGDETG++TL ARN Q++ KE + +V+RN +Y G++RL V +WGKI+ YPD V STP PP ++ ND S++EYELV ++E
Sbjct: 11 RPASYVKVEDVTPGTHGHNLVLRIVSVTPLVAKKRQDGNAPRMAEAVVGDETGIVTLTARNEQIDSL-----KEGGD------VVIRNCNADVYNGYLRLNVTRWGKITPYPDGVDSTPNPPTEINMENDFSAIEYELVTVEGSEE 145
BLAST of EWM23061.1 vs. NCBI_GenBank
Match: gi|301102097|ref|XP_002900136.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262102288|gb|EEY60340.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 126.716 bits (317), Expect = 2.176e-33 Identity = 68/146 (46.58%), Postives = 91/146 (62.33%), Query Frame = 0
Query: 31 RPARYTKVDLLTPASVGHNLVLRVLRILATFEKARVDGSTTKIAEIVVGDETGVITLRARNSQVEFFLKKVQKEEEEEEKPCVIVLRNAGVSMYKGHMRLIVNKWGKISSYPDEVASTPPPPADVLGTNDKSSVEYELVEQMAAKE 176
R A Y KV LTP S GHNLVL+V+ I T EK R DG+ ++IAE V+ DETG +TL ARN Q++ + + +V+RN+ ++ G MRL V +WGK+S +PD VASTPP P V ++ S+VEYELV A+E
Sbjct: 12 RRATYVKVQDLTPGSQGHNLVLQVVSIAPTVEKKRYDGTISRIAEAVLADETGCVTLTARNDQIDMLKEGLD-----------VVVRNSNADIFNGFMRLNVTQWGKLSPHPDGVASTPPAPPKVNTDSNISAVEYELVTVDDAEE 146
BLAST of EWM23061.1 vs. NCBI_GenBank
Match: gi|669169201|ref|XP_008619949.1| (hypothetical protein SDRG_15551 [Saprolegnia diclina VS20] >gi|530728369|gb|EQC26611.1| hypothetical protein SDRG_15551 [Saprolegnia diclina VS20]) HSP 1 Score: 122.865 bits (307), Expect = 6.728e-32 Identity = 64/141 (45.39%), Postives = 90/141 (63.83%), Query Frame = 0
Query: 29 PSRPARYTKVDLLTPASVGHNLVLRVLRILATFEKARVDGSTTKIAEIVVGDETGVITLRARNSQVEFFLKKVQKEEEEEEKPCVIVLRNAGVSMYKGHMRLIVNKWGKISSYPDEVASTPPPPADVLGTNDKSSVEYELV 169
P R A Y KV L P + GHNLV RVL EK + DG+T++IAE+++GDETG I + A N Q++ F+ V + +V+RNA V +++G RL V+KWGK++S+PD + STP P VL N+ S++EYELV
Sbjct: 4 PLRTATYVKVKDLVPGTHGHNLVARVLSAEIISEKVQADGTTSRIAEVLIGDETGTIIVSAWNEQIDLFI--VGRN---------VVVRNADVGVHRGFARLRVSKWGKLASHPDGIKSTPKVPGKVLTENNMSAIEYELV 133
BLAST of EWM23061.1 vs. NCBI_GenBank
Match: gi|635369432|emb|CCI42363.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 132.494 bits (332), Expect = 6.808e-32 Identity = 71/152 (46.71%), Postives = 96/152 (63.16%), Query Frame = 0
Query: 31 RPARYTKVDLLTPASVGHNLVLRVLRILATFEKARVDGSTTKIAEIVVGDETGVITLRARNSQVEFFLKKVQKEEEEEEKPCVIVLRNAGVSMYKGHMRLIVNKWGKISSYPDEVASTPPPPADVLGTNDKSSVEYELVEQMAAKEGGESEE 182
RPA Y KV+ +TP + GHNLVLR++ + K R DG+ ++AE VVGDETG++TL ARN Q++ KE + IV+RN +Y G++RL V +WGKI+ YPD VASTP PP ++ ND S++EYELV EG E E+
Sbjct: 531 RPASYVKVEDVTPGTHGHNLVLRIVSVTPLEAKKRQDGNAPRMAEAVVGDETGIVTLTARNEQIDSL-----KEGSD------IVIRNCNADVYNGYLRLNVTRWGKITPYPDGVASTPKPPTEIKMENDFSAIEYELV----TVEGSEEED 667
BLAST of EWM23061.1 vs. NCBI_GenBank
Match: gi|698795772|ref|XP_009830915.1| (hypothetical protein H257_07175 [Aphanomyces astaci] >gi|574114491|gb|ETV79979.1| hypothetical protein H257_07175 [Aphanomyces astaci]) HSP 1 Score: 120.939 bits (302), Expect = 5.988e-31 Identity = 66/146 (45.21%), Postives = 87/146 (59.59%), Query Frame = 0
Query: 24 VSTAPPSRPARYTKVDLLTPASVGHNLVLRVLRILATFEKARVDGSTTKIAEIVVGDETGVITLRARNSQVEFFLKKVQKEEEEEEKPCVIVLRNAGVSMYKGHMRLIVNKWGKISSYPDEVASTPPPPADVLGTNDKSSVEYELV 169
V+T P R A Y KV LTPA+ GH LV++V + EK R DGS +I E VGDETG + L ARN Q++ + V+V+RNA +Y G +RL V +WGKI+ +PD +ASTP P+ + N+ SSVEYELV
Sbjct: 4 VNTKKPLRRATYVKVKDLTPATKGHCLVVQVYALGHVTEKPRYDGSVVRIVEATVGDETGTVVLSARNGQIQLL-----------DVGRVLVIRNANADVYNGFLRLNVTQWGKIAPHPDGIASTPNAPSSINTVNNISSVEYELV 138
BLAST of EWM23061.1 vs. NCBI_GenBank
Match: gi|673045115|ref|XP_008876518.1| (hypothetical protein H310_11573 [Aphanomyces invadans] >gi|574467906|gb|ETV94927.1| hypothetical protein H310_11573 [Aphanomyces invadans]) HSP 1 Score: 120.168 bits (300), Expect = 9.312e-31 Identity = 69/156 (44.23%), Postives = 91/156 (58.33%), Query Frame = 0
Query: 24 VSTAPPSRPARYTKVDLLTPASVGHNLVLRVLRILATFEKARVDGSTTKIAEIVVGDETGVITLRARNSQVEFFLKKVQKEEEEEEKPCVIVLRNAGVSMYKGHMRLIVNKWGKISSYPDEVASTPPPPADVLGTNDKSSVEYELV--EQMAAKEG 177
V+T P R A Y KV L PA+ GH LV++V I EK R+DGS +I E VGDETG + L ARN Q++ E V+V+RNA +Y G +RL V +WGKI+ +PD +ASTP P V +N+ S +EYELV E + +EG
Sbjct: 4 VNTKKPLRRATYVKVKDLAPATKGHCLVVQVHAIDPATEKTRIDGSIVRIVEATVGDETGTVVLNARNEQIKLV-----------EVGRVLVIRNASADVYNGFLRLNVTQWGKIAPHPDGIASTPHAPQSVNTSNNVSGIEYELVPAEDVDHEEG 148 The following BLAST results are available for this feature:
BLAST of EWM23061.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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