rna7621, rna7621 (mRNA) Nannochloropsis gaditana

Overview
Namerna7621
Unique Namerna7621
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length498
Alignment locationCM002472.1:402918..404323 -

Link to JBrowse

Properties
Property NameValue
Productputative 39s ribosomal protein mitochondrial precursor
Orig transcript idgnl|cribi|Naga_100598g2.10411.mrna
Orig protein idgnl|cribi|Naga_100598g2.10411
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:402918..404323 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100598g2gene7380Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7621rna7621-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23073.1cds7601Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7621 ID=rna7621|Name=rna7621|organism=Nannochloropsis gaditana|type=mRNA|length=498bp
AGGTGGCAGCATGTCAGCGCCACGCTGCCGCTGCGTCCTTCCTCTTCTGC
GTCACTTTCTCCTTGTCCTCCTCCTTTCCCGGGTCGCCCTCCCCTTCGTC
CTTCCCTGCCTCCATCGTCCCCTTTCCGCGCCTTCCACTCGCGTATTCCT
CTCATCTGATGGCAGCACGGCCACGAACCTCCAAGCCTCTCCAACTCCTG
CATTGGCGGTTGATGCCCGCGGACGGTCCCGGCTCCCGTGGAGGAAGGAA
GGTTACAGCTACTGGAGTTGGCAGGGGCATCACATCCATTACGTGGCGTT
GGAAGGAGAAGACAGCCGGCAGGCGAACAAGCCTCCCATCGTCTTGATCC
ACGGGTTTGGGGCCTCGGCATTTCACTGGCGGTACAACATTCCTGCCCTG
GCCCGCACCCACCGGGTGTTTGCCCTCGACCTCCTCGGTTTCGGCCTCAG
CGACAAGCCTCTCACAGAGTACAACGCCGAGGTGGGGAAGGAGGGAGG
back to top

protein sequence of rna7621

>rna7621-protein ID=rna7621-protein|Name=rna7621|organism=Nannochloropsis gaditana|type=polypeptide|length=189bp
MSTMNAAMKGMKMLEKRLPHKKKMLEPIKPSRWTIFKGDKVEVINGPETG
KQGTIIKVLRAQNRVIIDGVNVRRRTQQPSGSGQPGKIITYPAALHVSNV
SLLDPESHEPTRVARRYLESGVKVRVSASSQKILPKPEYRREKIRRAAVS
PKDTLPEDVYEVTYEGYLAPSRPPKKDQGPRFVVETGKE
back to top

mRNA from alignment at CM002472.1:402918..404323-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7621 ID=rna7621|Name=rna7621|organism=Nannochloropsis gaditana|type=mRNA|length=1406bp|location=Sequence derived from alignment at CM002472.1:402918..404323- (Nannochloropsis gaditana)
TCTGACTTTCTCTATCAGGATATTGCTGGGACAGGGGTATTAATTCATCA
GACGGACGCCCCCCCACCCAAGCCGTCATATCCTCCTCGAGGCGCCTCTC
TGAGCTCGCTTCTTCTTTCTCCTTCGCTTGCTTCCTAGAGGAGCCCATTG
TGACCATTGGGAGTCATGTCAACCATGAATGCTGCCATGAAAGGGATGAA
GATGCTGGAAAAACGTCTCCCGCATAAAAAGAAGATGTTGGAGCCGATCA
AGCCGTCAAGGTAAGCCCGGGAGAAAGAGAGCCAATGGATGACAGCAAAC
AAAAGACAGAAAGATAGACCCAAGGTGAAAACAGCGCATCGAAATGGGGC
GAGGGTGCGGTCGTGGGCTAAAAAATTCGAGCTTTTGCACCGAGAGGGGT
GATGAGAAATGGTTATTTGAAAGGGAGGCACGCCGCCGCGTTAGATGATA
CCCAGCAGGACAGTATTTGAGGTTGAAAACTCAAAGGACGACTGAGCATT
TGTATTTCTTTGTTTAGTGTTTGTGTTACAAATGCCTGGAAGACATGAAC
ATTCGCATTTCCACCCCCCGGGGAACCGGTGGTGCGAACGAACGTCCCTC
TTGGGAAAGGTTTTCGGGGTGTTGGAAAGCTCGCAGGGTACCCTCATGTA
CAAGGACGGAAACTTCCTCGGACACATTCCTGACATTGATACAGGCACAA
GGACTGATCAATCCACGGCACACATTTGACTTAAGCTCCTCCCCCTTTCC
ATTTCCCTTTCCCCCCCCCGTCCCTGGCACGCCAGATGGACCATTTTCAA
AGGGGACAAAGTGGAGGTCATCAACGGACCGGAGACAGGGAAGCAAGGCA
CTATCATCAAGGTCCTCCGGGCGCAGAACCGCGTGATTATCGACGGCGTG
AACGTGCGGCGGCGGACCCAGCAACCTTCGGGGAGCGGGCAGCCGGGGAA
GATCATCACGTACCCAGCTGCCCTTCACGTCTCGAACGTCTCCCTCCTGG
ACCCCGAATCCCACGAGCCCACCAGGGTCGCCCGGCGGTACCTGGAAAGC
GGCGTCAAGGTCCGAGTCAGTGCATCGAGCCAGAAAATCCTGCCCAAGCC
GGAGTATAGGCGGGAAAAGATACGCCGGGCGGCGGTGAGCCCCAAGGACA
CGTTGCCTGAGGACGTGTACGAGGTCACCTACGAGGGCTACCTGGCCCCG
AGCCGGCCACCCAAGAAGGATCAAGGGCCCCGCTTTGTAGTGGAGACAGG
GAAAGAATGAGGCGGAGGGCGGGAGAGGACGCGAAAATGAAGAAAAAAAG
CTTTCGGCAAGAGCGCGTGTAGCCCGAACTTGAAAGAGAGGGAGGGAGGG
ACGGACGGAGGGAGGGACAGAGGATACTTGGCATCCTAAGTGCACGCTTG
GCGGTC
back to top

Coding sequence (CDS) from alignment at CM002472.1:402918..404323-

>rna7621 ID=rna7621|Name=rna7621|organism=Nannochloropsis gaditana|type=CDS|length=1140bp|location=Sequence derived from alignment at CM002472.1:402918..404323- (Nannochloropsis gaditana)
ATGGACCATTTTCAAAGGGGACAAAGTGGAGGTCATCAACGGACCGGAGA
CAGGGAAGCAAGGCACTATCATCAAGGTCCTCCGGGCGCAGAACCGCGTG
ATTATCGACGGCGTGAACGTGCGGCGGCGGACCCAGCAACCTTCGGGGAG
CGGGCAGCCGGGGAAGATCATCACGTACCCAGCTGCCCTTCACGTCTCGA
ACGTCTCCCTCCTGGACCCCGAATCCCACGAGCCCACCAGGGTCGCCCGG
CGGTACCTGGAAAGCGGCGTCAAGGTCCGAGTCAGTGCATCGAGCCAGAA
AATCCTGCCCAAGCCGGAGTATAGGCGGGAAAAGATACGCCGGGCGGCGG
TGAGCCCCAAGGACACGTTGCCTGAGGACGTGTACGAGGTCACCTACGAG
GGCTACCTGGCCCCGAGCCGGCCACCCAAGAAGGATCAAGGGCCCCGCTT
TGTAGTGGAGACAGGGAAAGAATGAATGTCAACCATGAATGCTGCCATGA
AAGGGATGAAGATGCTGGAAAAACGTCTCCCGCATAAAAAGAAGATGTTG
GAGCCGATCAAGCCGTCAAGATGGACCATTTTCAAAGGGGACAAAGTGGA
GGTCATCAACGGACCGGAGACAGGGAAGCAAGGCACTATCATCAAGGTCC
TCCGGGCGCAGAACCGCGTGATTATCGACGGCGTGAACGTGCGGCGGCGG
ACCCAGCAACCTTCGGGGAGCGGGCAGCCGGGGAAGATCATCACGTACCC
AGCTGCCCTTCACGTCTCGAACGTCTCCCTCCTGGACCCCGAATCCCACG
AGCCCACCAGGGTCGCCCGGCGGTACCTGGAAAGCGGCGTCAAGGTCCGA
GTCAGTGCATCGAGCCAGAAAATCCTGCCCAAGCCGGAGTATAGGCGGGA
AAAGATACGCCGGGCGGCGGTGAGCCCCAAGGACACGTTGCCTGAGGACG
TGTACGAGGTCACCTACGAGGGCTACCTGGCCCCGAGCCGGCCACCCAAG
AAGGATCAAGGGCCCCGCTTTGTAGTGGAGACAGGGAAAGAATGAATGTC
AACCATGAATGCTGCCATGAAAGGGATGAAGATGCTGGAAAAACGTCTCC
CGCATAAAAAGAAGATGTTGGAGCCGATCAAGCCGTCAAG
back to top
Synonyms
Publications