EWM23073.1, cds7601 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23073.1 vs. NCBI_GenBank
Match: gi|585103902|gb|EWM23073.1| (putative 39s ribosomal protein mitochondrial precursor [Nannochloropsis gaditana]) HSP 1 Score: 382.489 bits (981), Expect = 2.210e-134 Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0
Query: 1 MSTMNAAMKGMKMLEKRLPHKKKMLEPIKPSRWTIFKGDKVEVINGPETGKQGTIIKVLRAQNRVIIDGVNVRRRTQQPSGSGQPGKIITYPAALHVSNVSLLDPESHEPTRVARRYLESGVKVRVSASSQKILPKPEYRREKIRRAAVSPKDTLPEDVYEVTYEGYLAPSRPPKKDQGPRFVVETGKE 189
MSTMNAAMKGMKMLEKRLPHKKKMLEPIKPSRWTIFKGDKVEVINGPETGKQGTIIKVLRAQNRVIIDGVNVRRRTQQPSGSGQPGKIITYPAALHVSNVSLLDPESHEPTRVARRYLESGVKVRVSASSQKILPKPEYRREKIRRAAVSPKDTLPEDVYEVTYEGYLAPSRPPKKDQGPRFVVETGKE
Sbjct: 1 MSTMNAAMKGMKMLEKRLPHKKKMLEPIKPSRWTIFKGDKVEVINGPETGKQGTIIKVLRAQNRVIIDGVNVRRRTQQPSGSGQPGKIITYPAALHVSNVSLLDPESHEPTRVARRYLESGVKVRVSASSQKILPKPEYRREKIRRAAVSPKDTLPEDVYEVTYEGYLAPSRPPKKDQGPRFVVETGKE 189
BLAST of EWM23073.1 vs. NCBI_GenBank
Match: gi|553191013|ref|XP_005855310.1| (50s ribosomal protein l24 [Nannochloropsis gaditana CCMP526] >gi|422293752|gb|EKU21052.1| 50s ribosomal protein l24 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 301.982 bits (772), Expect = 7.018e-100 Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0
Query: 39 DKVEVINGPETGKQGTIIKVLRAQNRVIIDGVNVRRRTQQPSGSGQPGKIITYPAALHVSNVSLLDPESHEPTRVARRYLESGVKVRVSASSQKILPKPEYRREKIRRAAVSPKDTLPEDVYEVTYEGYLAPSRPPKKDQGPRFVVETGKE 189
DKVEVINGPETGKQGTIIKVLRAQNRVIIDGVNVRRRTQQPSGSGQPGKIITYPAALHVSNVSLLDPESHEPTRVARRYLESGVKVRVSASSQKILPKPEYRREKIRRAAVSPKDTLPEDVYEVTYEGYLAPSRPPKKDQGPRFVVETGKE
Sbjct: 217 DKVEVINGPETGKQGTIIKVLRAQNRVIIDGVNVRRRTQQPSGSGQPGKIITYPAALHVSNVSLLDPESHEPTRVARRYLESGVKVRVSASSQKILPKPEYRREKIRRAAVSPKDTLPEDVYEVTYEGYLAPSRPPKKDQGPRFVVETGKE 367 HSP 2 Score: 67.781 bits (164), Expect = 4.871e-10 Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0
Query: 1 MSTMNAAMKGMKMLEKRLPHKKKMLEPIKPSR 32
MSTMNAAMKGMKMLEKRLPHKKKMLEPIKPSR
Sbjct: 1 MSTMNAAMKGMKMLEKRLPHKKKMLEPIKPSR 32
BLAST of EWM23073.1 vs. NCBI_GenBank
Match: gi|298711641|emb|CBJ32696.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 131.724 bits (330), Expect = 1.609e-35 Identity = 72/170 (42.35%), Postives = 109/170 (64.12%), Query Frame = 0
Query: 2 STMNAAMKGMKMLEKRLPHKKKMLEP---IKPSRWTIFKGDKVEVINGPETGKQGTIIKVLRAQNRVIIDGVNVRRRTQQPSGSGQPGKIITYPAALHVSNVSLLDPESHEPTRVARRYLESGVKVRVSASSQKILPKPEYR--REKIRRAAVSPKDTLPEDVYEVTYEG 166
++ N + MK L K K L P I ++WTI +GDKV V+NG TG+ G + V+R QNR+I++GVN+R+ +++P G G+ G +T AA+HV+NV+L+ PE+ PT+V+ ++LE G +VRV+ S ++P+PE R K R PKDT+ EDV E+T+ G
Sbjct: 3 ASSNFLIPAMKRLMKPTQKLKPGLLPKNIIPKNKWTILRGDKVHVVNGHHTGEVGIVQAVIRKQNRIIVEGVNMRKYSKKPEGGGR-GTTVTREAAIHVTNVNLVCPETGFPTKVSYKFLEDGTRVRVAKRSGAVIPRPEILTVRRKPRSNLTGPKDTVKEDVEEITFRG 171
BLAST of EWM23073.1 vs. NCBI_GenBank
Match: gi|673041913|ref|XP_008874917.1| (ribosomal protein L24 [Aphanomyces invadans] >gi|574469640|gb|ETV96654.1| ribosomal protein L24 [Aphanomyces invadans]) HSP 1 Score: 124.405 bits (311), Expect = 9.555e-33 Identity = 62/154 (40.26%), Postives = 98/154 (63.64%), Query Frame = 0
Query: 16 KRLPHKKKMLEPIKPSRWTIFKGDKVEVINGPETGKQGTIIKVLRAQNRVIIDGVNVRRRTQQPSGSGQPGKIITYPAALHVSNVSLLDPESHEPTRVARRYLESGVKVRVSASSQKILPKPEYRREKI--RRAAVSPKDTLPEDVYEVTYEGY 167
+++P ++K++ PI W IF+GD VEVI+GP GKQG + +V+RA+N V+++ +N+R R + PG+I P +H SNV+L+DP +PTR+ R+ E G ++R+S + ++PKP+ +E+ RR P DT PEDV E T E +
Sbjct: 10 RKMPKREKLIAPI--PTWNIFRGDLVEVISGPHRGKQGEVKEVIRAKNAVVLNDINMRHRYVKAKPGVAPGRIYLAPGPIHYSNVNLVDPSIGKPTRIGIRFAEDGERLRISKKTGTVIPKPDVLKERQAPRRTETGPLDTAPEDVLERTVEDW 161
BLAST of EWM23073.1 vs. NCBI_GenBank
Match: gi|1173941880|gb|OQR90964.1| (39S ribosomal protein L24, mitochondrial [Achlya hypogyna]) HSP 1 Score: 121.709 bits (304), Expect = 1.069e-31 Identity = 65/150 (43.33%), Postives = 96/150 (64.00%), Query Frame = 0
Query: 16 KRLPHKKKMLEPIKPSRWTIFKGDKVEVINGPETGKQGTIIKVLRAQNRVIIDGVNVRRRTQQPSGSGQPGKIITYPAALHVSNVSLLDPESHEPTRVARRYLESGVKVRVSASSQKILPKPEYRREKI--RRAAVSPKDTLPEDVYEVT 163
+++P ++K++ I S+W IF+GDKVEV+ GP GKQG + +V+RA+N VI+D +N+R R + PG+I P +H SNV+L+D +PTR+A R+ E G ++RVS + I+ KPE +E+ RR P DT PEDV E T
Sbjct: 10 RKVPKREKLIPEI--SKWHIFRGDKVEVVAGPHKGKQGVVKEVVRAKNSVILDDINMRHRYVKAKPGVAPGRIYLAPGPIHYSNVNLIDETIGKPTRIAVRFSEEGERLRVSKKTGTIIAKPEVLKERHTPRRTETGPLDTAPEDVLERT 157
BLAST of EWM23073.1 vs. NCBI_GenBank
Match: gi|698800198|ref|XP_009833128.1| (ribosomal protein L24 [Aphanomyces astaci] >gi|574111847|gb|ETV77341.1| ribosomal protein L24 [Aphanomyces astaci]) HSP 1 Score: 120.939 bits (302), Expect = 2.114e-31 Identity = 64/152 (42.11%), Postives = 97/152 (63.82%), Query Frame = 0
Query: 16 KRLPHKKKMLEPIKPSRWTIFKGDKVEVINGPETGKQGTIIKVLRAQNRVIIDGVNVRRRTQQPSGSGQPGKIITYPAALHVSNVSLLDPESHEPTRVARRYLESGVKVRVSASSQKILPKPEYRREKI--RRAAVSPKDTLPEDVYEVTYE 165
+++P ++K + P PS W IF+GD VEVI+GP GKQG + +V+R +N V+++ +N+R R + PG+I P A+H SNV+L+DP +PTR+ R+ E G ++R+S S I+PKP+ +E+ RR P DT PEDV E T +
Sbjct: 10 RKMPKREKFI-PSFPS-WNIFRGDLVEVISGPHRGKQGEVKEVIREKNAVVLNDINMRHRYVKAKPGVAPGRIYLAPGAIHYSNVNLIDPSIGKPTRIGIRFGEDGERLRISKKSGTIIPKPDVLKERQSPRRTETGPLDTAPEDVLERTVD 159
BLAST of EWM23073.1 vs. NCBI_GenBank
Match: gi|669147290|ref|XP_008609207.1| (hypothetical protein SDRG_05274 [Saprolegnia diclina VS20] >gi|530738803|gb|EQC37045.1| hypothetical protein SDRG_05274 [Saprolegnia diclina VS20]) HSP 1 Score: 120.553 bits (301), Expect = 3.021e-31 Identity = 68/162 (41.98%), Postives = 99/162 (61.11%), Query Frame = 0
Query: 4 MNAAMKGMKMLEKRLPHKKKMLEPIKPSRWTIFKGDKVEVINGPETGKQGTIIKVLRAQNRVIIDGVNVRRRTQQPSGSGQPGKIITYPAALHVSNVSLLDPESHEPTRVARRYLESGVKVRVSASSQKILPKPEYRREKI--RRAAVSPKDTLPEDVYEVT 163
M AAM+ M P ++K++ I +W IF+GDKVEV+ GP GKQG + +V+RA+N +I++ +N+R R + PG+I P +H SNV+L+D +PTR+A R+ E G ++RVS + I+PKPE +E+ RR P DT PEDV E T
Sbjct: 5 MPAAMRKM-------PKREKLIAEI--PKWNIFRGDKVEVVAGPHKGKQGVVKEVVRAKNSLILEDINMRHRYVKAKPGVAPGRIYLAPGPIHYSNVNLVDETIGKPTRIAIRFSEEGERLRVSKKTGTIIPKPEVLKERHTPRRTETGPLDTAPEDVLERT 157
BLAST of EWM23073.1 vs. NCBI_GenBank
Match: gi|1173960693|gb|OQS06796.1| (39S ribosomal protein L24, mitochondrial [Thraustotheca clavata]) HSP 1 Score: 119.013 bits (297), Expect = 1.119e-30 Identity = 62/150 (41.33%), Postives = 95/150 (63.33%), Query Frame = 0
Query: 16 KRLPHKKKMLEPIKPSRWTIFKGDKVEVINGPETGKQGTIIKVLRAQNRVIIDGVNVRRRTQQPSGSGQPGKIITYPAALHVSNVSLLDPESHEPTRVARRYLESGVKVRVSASSQKILPKPEYRREKI--RRAAVSPKDTLPEDVYEVT 163
+++P ++K++ I +W IF+GDKVEV+ GP GKQG + +V+RA+N VI++ +N+R R + PG+I P +H SN++L+D +PTR+A R+ E G ++RVS + I+ KPE +E+ RR P DT PEDV E T
Sbjct: 10 RKMPKREKLIAEI--PKWNIFRGDKVEVVTGPHKGKQGVVKEVVRAKNSVILEDINMRHRYVKAKPGVAPGRIYLAPGPIHYSNINLIDETIGKPTRIAIRFSEEGERLRVSKKTGTIIAKPEILKERHTPRRTETGPLDTAPEDVLERT 157
BLAST of EWM23073.1 vs. NCBI_GenBank
Match: gi|567985648|gb|ETL35987.1| (ribosomal protein L24 [Phytophthora parasitica]) HSP 1 Score: 115.161 bits (287), Expect = 3.879e-29 Identity = 65/149 (43.62%), Postives = 92/149 (61.74%), Query Frame = 0
Query: 21 KKKMLEPIKPSRWTIFKGDKVEVINGPETGKQGTIIKVLRAQNRVIIDGVNVRRRTQQPSGSGQPGKIITYPAALHVSNVSLLDPESHEPTRVARRYLESGVKVRVSASSQKILPKPEYRREKI--RRAAVSPKDTLPEDVYEVTYEGY 167
KKK ++ IK W IF+GDKVE+I GP G QG ++KV+R N+VI++ VN+ R + + + G+ P+ +H SNV+LLDP +PTR+A R+ + G KVRVS + I+PKP +E+ RR P DT PED E T E +
Sbjct: 16 KKKPIDLIK--TWHIFRGDKVEIIAGPHKGTQGEVVKVVRDLNKVIVENVNMSHRYVKATPAAA-GRSYLSPSPIHYSNVNLLDPSIGKPTRIAIRFTDEGEKVRVSKKTGTIIPKPAILKERHNPRRTETGPFDTAPEDALERTVEDW 161
BLAST of EWM23073.1 vs. NCBI_GenBank
Match: gi|325188020|emb|CCA22563.1| (39S ribosomal protein L24 putative [Albugo laibachii Nc14]) HSP 1 Score: 114.005 bits (284), Expect = 1.011e-28 Identity = 66/149 (44.30%), Postives = 91/149 (61.07%), Query Frame = 0
Query: 21 KKKMLEPIKPSRWTIFKGDKVEVINGPETGKQGTIIKVLRAQNRVIIDGVNVRRRTQQPSGSGQPGKIITYPAALHVSNVSLLDPESHEPTRVARRYLESGVKVRVSASSQKILPKPEYRREKI--RRAAVSPKDTLPEDVYEVTYEGY 167
KKK +E IK W I +GD VEVINGP GKQG I+ V+R QN+VI++ +N+ R + + PG+ P LH SNV+L+DP +PTR+ R+ E G K+RVS + I+PKP+ +E+ R A P DT PED + T E +
Sbjct: 16 KKKAIELIK--NWHIVRGDFVEVINGPHKGKQGEIVGVIRDQNKVIVENINMHHRYVKKT-PMTPGRSYLAPGPLHYSNVNLVDPSVGKPTRIGIRFSEDGDKLRVSKKTGTIIPKPDKLKERKTPRGAETGPFDTPPEDALKRTVEDW 161 The following BLAST results are available for this feature:
BLAST of EWM23073.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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