EWM23073.1, cds7601 (CDS) Nannochloropsis gaditana

Overview
NameEWM23073.1
Unique Namecds7601
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:404064..404158 -
Alignment locationCM002472.1:403064..403538 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23073.1
Productputative 39s ribosomal protein mitochondrial precursor
Orig transcript idgnl|cribi|Naga_100598g2.10411.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:404064..404158 -
CM002472.1supercontigCM002472.1:403064..403538 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR008991Translation_prot_SH3-like
IPR014722Rib_L2_dom2
IPR003256Ribosomal_L24
IPR005824KOW
Homology
BLAST of EWM23073.1 vs. NCBI_GenBank
Match: gi|585103902|gb|EWM23073.1| (putative 39s ribosomal protein mitochondrial precursor [Nannochloropsis gaditana])

HSP 1 Score: 382.489 bits (981), Expect = 2.210e-134
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0
Query:    1 MSTMNAAMKGMKMLEKRLPHKKKMLEPIKPSRWTIFKGDKVEVINGPETGKQGTIIKVLRAQNRVIIDGVNVRRRTQQPSGSGQPGKIITYPAALHVSNVSLLDPESHEPTRVARRYLESGVKVRVSASSQKILPKPEYRREKIRRAAVSPKDTLPEDVYEVTYEGYLAPSRPPKKDQGPRFVVETGKE 189
            MSTMNAAMKGMKMLEKRLPHKKKMLEPIKPSRWTIFKGDKVEVINGPETGKQGTIIKVLRAQNRVIIDGVNVRRRTQQPSGSGQPGKIITYPAALHVSNVSLLDPESHEPTRVARRYLESGVKVRVSASSQKILPKPEYRREKIRRAAVSPKDTLPEDVYEVTYEGYLAPSRPPKKDQGPRFVVETGKE
Sbjct:    1 MSTMNAAMKGMKMLEKRLPHKKKMLEPIKPSRWTIFKGDKVEVINGPETGKQGTIIKVLRAQNRVIIDGVNVRRRTQQPSGSGQPGKIITYPAALHVSNVSLLDPESHEPTRVARRYLESGVKVRVSASSQKILPKPEYRREKIRRAAVSPKDTLPEDVYEVTYEGYLAPSRPPKKDQGPRFVVETGKE 189          
BLAST of EWM23073.1 vs. NCBI_GenBank
Match: gi|553191013|ref|XP_005855310.1| (50s ribosomal protein l24 [Nannochloropsis gaditana CCMP526] >gi|422293752|gb|EKU21052.1| 50s ribosomal protein l24 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 301.982 bits (772), Expect = 7.018e-100
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0
Query:   39 DKVEVINGPETGKQGTIIKVLRAQNRVIIDGVNVRRRTQQPSGSGQPGKIITYPAALHVSNVSLLDPESHEPTRVARRYLESGVKVRVSASSQKILPKPEYRREKIRRAAVSPKDTLPEDVYEVTYEGYLAPSRPPKKDQGPRFVVETGKE 189
            DKVEVINGPETGKQGTIIKVLRAQNRVIIDGVNVRRRTQQPSGSGQPGKIITYPAALHVSNVSLLDPESHEPTRVARRYLESGVKVRVSASSQKILPKPEYRREKIRRAAVSPKDTLPEDVYEVTYEGYLAPSRPPKKDQGPRFVVETGKE
Sbjct:  217 DKVEVINGPETGKQGTIIKVLRAQNRVIIDGVNVRRRTQQPSGSGQPGKIITYPAALHVSNVSLLDPESHEPTRVARRYLESGVKVRVSASSQKILPKPEYRREKIRRAAVSPKDTLPEDVYEVTYEGYLAPSRPPKKDQGPRFVVETGKE 367          

HSP 2 Score: 67.781 bits (164), Expect = 4.871e-10
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0
Query:    1 MSTMNAAMKGMKMLEKRLPHKKKMLEPIKPSR 32
            MSTMNAAMKGMKMLEKRLPHKKKMLEPIKPSR
Sbjct:    1 MSTMNAAMKGMKMLEKRLPHKKKMLEPIKPSR 32          
BLAST of EWM23073.1 vs. NCBI_GenBank
Match: gi|298711641|emb|CBJ32696.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 131.724 bits (330), Expect = 1.609e-35
Identity = 72/170 (42.35%), Postives = 109/170 (64.12%), Query Frame = 0
Query:    2 STMNAAMKGMKMLEKRLPHKKKMLEP---IKPSRWTIFKGDKVEVINGPETGKQGTIIKVLRAQNRVIIDGVNVRRRTQQPSGSGQPGKIITYPAALHVSNVSLLDPESHEPTRVARRYLESGVKVRVSASSQKILPKPEYR--REKIRRAAVSPKDTLPEDVYEVTYEG 166
            ++ N  +  MK L K     K  L P   I  ++WTI +GDKV V+NG  TG+ G +  V+R QNR+I++GVN+R+ +++P G G+ G  +T  AA+HV+NV+L+ PE+  PT+V+ ++LE G +VRV+  S  ++P+PE    R K R     PKDT+ EDV E+T+ G
Sbjct:    3 ASSNFLIPAMKRLMKPTQKLKPGLLPKNIIPKNKWTILRGDKVHVVNGHHTGEVGIVQAVIRKQNRIIVEGVNMRKYSKKPEGGGR-GTTVTREAAIHVTNVNLVCPETGFPTKVSYKFLEDGTRVRVAKRSGAVIPRPEILTVRRKPRSNLTGPKDTVKEDVEEITFRG 171          
BLAST of EWM23073.1 vs. NCBI_GenBank
Match: gi|673041913|ref|XP_008874917.1| (ribosomal protein L24 [Aphanomyces invadans] >gi|574469640|gb|ETV96654.1| ribosomal protein L24 [Aphanomyces invadans])

HSP 1 Score: 124.405 bits (311), Expect = 9.555e-33
Identity = 62/154 (40.26%), Postives = 98/154 (63.64%), Query Frame = 0
Query:   16 KRLPHKKKMLEPIKPSRWTIFKGDKVEVINGPETGKQGTIIKVLRAQNRVIIDGVNVRRRTQQPSGSGQPGKIITYPAALHVSNVSLLDPESHEPTRVARRYLESGVKVRVSASSQKILPKPEYRREKI--RRAAVSPKDTLPEDVYEVTYEGY 167
            +++P ++K++ PI    W IF+GD VEVI+GP  GKQG + +V+RA+N V+++ +N+R R  +      PG+I   P  +H SNV+L+DP   +PTR+  R+ E G ++R+S  +  ++PKP+  +E+   RR    P DT PEDV E T E +
Sbjct:   10 RKMPKREKLIAPI--PTWNIFRGDLVEVISGPHRGKQGEVKEVIRAKNAVVLNDINMRHRYVKAKPGVAPGRIYLAPGPIHYSNVNLVDPSIGKPTRIGIRFAEDGERLRISKKTGTVIPKPDVLKERQAPRRTETGPLDTAPEDVLERTVEDW 161          
BLAST of EWM23073.1 vs. NCBI_GenBank
Match: gi|1173941880|gb|OQR90964.1| (39S ribosomal protein L24, mitochondrial [Achlya hypogyna])

HSP 1 Score: 121.709 bits (304), Expect = 1.069e-31
Identity = 65/150 (43.33%), Postives = 96/150 (64.00%), Query Frame = 0
Query:   16 KRLPHKKKMLEPIKPSRWTIFKGDKVEVINGPETGKQGTIIKVLRAQNRVIIDGVNVRRRTQQPSGSGQPGKIITYPAALHVSNVSLLDPESHEPTRVARRYLESGVKVRVSASSQKILPKPEYRREKI--RRAAVSPKDTLPEDVYEVT 163
            +++P ++K++  I  S+W IF+GDKVEV+ GP  GKQG + +V+RA+N VI+D +N+R R  +      PG+I   P  +H SNV+L+D    +PTR+A R+ E G ++RVS  +  I+ KPE  +E+   RR    P DT PEDV E T
Sbjct:   10 RKVPKREKLIPEI--SKWHIFRGDKVEVVAGPHKGKQGVVKEVVRAKNSVILDDINMRHRYVKAKPGVAPGRIYLAPGPIHYSNVNLIDETIGKPTRIAVRFSEEGERLRVSKKTGTIIAKPEVLKERHTPRRTETGPLDTAPEDVLERT 157          
BLAST of EWM23073.1 vs. NCBI_GenBank
Match: gi|698800198|ref|XP_009833128.1| (ribosomal protein L24 [Aphanomyces astaci] >gi|574111847|gb|ETV77341.1| ribosomal protein L24 [Aphanomyces astaci])

HSP 1 Score: 120.939 bits (302), Expect = 2.114e-31
Identity = 64/152 (42.11%), Postives = 97/152 (63.82%), Query Frame = 0
Query:   16 KRLPHKKKMLEPIKPSRWTIFKGDKVEVINGPETGKQGTIIKVLRAQNRVIIDGVNVRRRTQQPSGSGQPGKIITYPAALHVSNVSLLDPESHEPTRVARRYLESGVKVRVSASSQKILPKPEYRREKI--RRAAVSPKDTLPEDVYEVTYE 165
            +++P ++K + P  PS W IF+GD VEVI+GP  GKQG + +V+R +N V+++ +N+R R  +      PG+I   P A+H SNV+L+DP   +PTR+  R+ E G ++R+S  S  I+PKP+  +E+   RR    P DT PEDV E T +
Sbjct:   10 RKMPKREKFI-PSFPS-WNIFRGDLVEVISGPHRGKQGEVKEVIREKNAVVLNDINMRHRYVKAKPGVAPGRIYLAPGAIHYSNVNLIDPSIGKPTRIGIRFGEDGERLRISKKSGTIIPKPDVLKERQSPRRTETGPLDTAPEDVLERTVD 159          
BLAST of EWM23073.1 vs. NCBI_GenBank
Match: gi|669147290|ref|XP_008609207.1| (hypothetical protein SDRG_05274 [Saprolegnia diclina VS20] >gi|530738803|gb|EQC37045.1| hypothetical protein SDRG_05274 [Saprolegnia diclina VS20])

HSP 1 Score: 120.553 bits (301), Expect = 3.021e-31
Identity = 68/162 (41.98%), Postives = 99/162 (61.11%), Query Frame = 0
Query:    4 MNAAMKGMKMLEKRLPHKKKMLEPIKPSRWTIFKGDKVEVINGPETGKQGTIIKVLRAQNRVIIDGVNVRRRTQQPSGSGQPGKIITYPAALHVSNVSLLDPESHEPTRVARRYLESGVKVRVSASSQKILPKPEYRREKI--RRAAVSPKDTLPEDVYEVT 163
            M AAM+ M       P ++K++  I   +W IF+GDKVEV+ GP  GKQG + +V+RA+N +I++ +N+R R  +      PG+I   P  +H SNV+L+D    +PTR+A R+ E G ++RVS  +  I+PKPE  +E+   RR    P DT PEDV E T
Sbjct:    5 MPAAMRKM-------PKREKLIAEI--PKWNIFRGDKVEVVAGPHKGKQGVVKEVVRAKNSLILEDINMRHRYVKAKPGVAPGRIYLAPGPIHYSNVNLVDETIGKPTRIAIRFSEEGERLRVSKKTGTIIPKPEVLKERHTPRRTETGPLDTAPEDVLERT 157          
BLAST of EWM23073.1 vs. NCBI_GenBank
Match: gi|1173960693|gb|OQS06796.1| (39S ribosomal protein L24, mitochondrial [Thraustotheca clavata])

HSP 1 Score: 119.013 bits (297), Expect = 1.119e-30
Identity = 62/150 (41.33%), Postives = 95/150 (63.33%), Query Frame = 0
Query:   16 KRLPHKKKMLEPIKPSRWTIFKGDKVEVINGPETGKQGTIIKVLRAQNRVIIDGVNVRRRTQQPSGSGQPGKIITYPAALHVSNVSLLDPESHEPTRVARRYLESGVKVRVSASSQKILPKPEYRREKI--RRAAVSPKDTLPEDVYEVT 163
            +++P ++K++  I   +W IF+GDKVEV+ GP  GKQG + +V+RA+N VI++ +N+R R  +      PG+I   P  +H SN++L+D    +PTR+A R+ E G ++RVS  +  I+ KPE  +E+   RR    P DT PEDV E T
Sbjct:   10 RKMPKREKLIAEI--PKWNIFRGDKVEVVTGPHKGKQGVVKEVVRAKNSVILEDINMRHRYVKAKPGVAPGRIYLAPGPIHYSNINLIDETIGKPTRIAIRFSEEGERLRVSKKTGTIIAKPEILKERHTPRRTETGPLDTAPEDVLERT 157          
BLAST of EWM23073.1 vs. NCBI_GenBank
Match: gi|567985648|gb|ETL35987.1| (ribosomal protein L24 [Phytophthora parasitica])

HSP 1 Score: 115.161 bits (287), Expect = 3.879e-29
Identity = 65/149 (43.62%), Postives = 92/149 (61.74%), Query Frame = 0
Query:   21 KKKMLEPIKPSRWTIFKGDKVEVINGPETGKQGTIIKVLRAQNRVIIDGVNVRRRTQQPSGSGQPGKIITYPAALHVSNVSLLDPESHEPTRVARRYLESGVKVRVSASSQKILPKPEYRREKI--RRAAVSPKDTLPEDVYEVTYEGY 167
            KKK ++ IK   W IF+GDKVE+I GP  G QG ++KV+R  N+VI++ VN+  R  + + +   G+    P+ +H SNV+LLDP   +PTR+A R+ + G KVRVS  +  I+PKP   +E+   RR    P DT PED  E T E +
Sbjct:   16 KKKPIDLIK--TWHIFRGDKVEIIAGPHKGTQGEVVKVVRDLNKVIVENVNMSHRYVKATPAAA-GRSYLSPSPIHYSNVNLLDPSIGKPTRIAIRFTDEGEKVRVSKKTGTIIPKPAILKERHNPRRTETGPFDTAPEDALERTVEDW 161          
BLAST of EWM23073.1 vs. NCBI_GenBank
Match: gi|325188020|emb|CCA22563.1| (39S ribosomal protein L24 putative [Albugo laibachii Nc14])

HSP 1 Score: 114.005 bits (284), Expect = 1.011e-28
Identity = 66/149 (44.30%), Postives = 91/149 (61.07%), Query Frame = 0
Query:   21 KKKMLEPIKPSRWTIFKGDKVEVINGPETGKQGTIIKVLRAQNRVIIDGVNVRRRTQQPSGSGQPGKIITYPAALHVSNVSLLDPESHEPTRVARRYLESGVKVRVSASSQKILPKPEYRREKI--RRAAVSPKDTLPEDVYEVTYEGY 167
            KKK +E IK   W I +GD VEVINGP  GKQG I+ V+R QN+VI++ +N+  R  + +    PG+    P  LH SNV+L+DP   +PTR+  R+ E G K+RVS  +  I+PKP+  +E+   R A   P DT PED  + T E +
Sbjct:   16 KKKAIELIK--NWHIVRGDFVEVINGPHKGKQGEIVGVIRDQNKVIVENINMHHRYVKKT-PMTPGRSYLAPGPLHYSNVNLVDPSVGKPTRIGIRFSEDGDKLRVSKKTGTIIPKPDKLKERKTPRGAETGPFDTPPEDALKRTVEDW 161          
The following BLAST results are available for this feature:
BLAST of EWM23073.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103902|gb|EWM23073.1|2.210e-134100.00putative 39s ribosomal protein mitochondrial precu... [more]
gi|553191013|ref|XP_005855310.1|7.018e-100100.0050s ribosomal protein l24 [Nannochloropsis gaditan... [more]
gi|298711641|emb|CBJ32696.1|1.609e-3542.35conserved unknown protein [Ectocarpus siliculosus][more]
gi|673041913|ref|XP_008874917.1|9.555e-3340.26ribosomal protein L24 [Aphanomyces invadans] >gi|5... [more]
gi|1173941880|gb|OQR90964.1|1.069e-3143.3339S ribosomal protein L24, mitochondrial [Achlya h... [more]
gi|698800198|ref|XP_009833128.1|2.114e-3142.11ribosomal protein L24 [Aphanomyces astaci] >gi|574... [more]
gi|669147290|ref|XP_008609207.1|3.021e-3141.98hypothetical protein SDRG_05274 [Saprolegnia dicli... [more]
gi|1173960693|gb|OQS06796.1|1.119e-3041.3339S ribosomal protein L24, mitochondrial [Thrausto... [more]
gi|567985648|gb|ETL35987.1|3.879e-2943.62ribosomal protein L24 [Phytophthora parasitica][more]
gi|325188020|emb|CCA22563.1|1.011e-2844.3039S ribosomal protein L24 putative [Albugo laibach... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7621rna7621Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications