rna7620, rna7620 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7620
Unique Name	rna7620
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	809
Alignment location	CM002472.1:398642..399628 -

Link to JBrowse

Properties


Property Name	Value
Product	alpha beta fold family protein
Orig transcript id	gnl\|cribi\|Naga_100598g1.10410.mrna
Orig protein id	gnl\|cribi\|Naga_100598g1.10410
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002472.1	supercontig	CM002472.1:398642..399628 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100598g1	gene7379	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7620	rna7620-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23072.1	cds7600	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002472.1:398642..399628-
coding sequence from alignment at CM002472.1:398642..399628-

mRNA sequence

>rna7620 ID=rna7620|Name=rna7620|organism=Nannochloropsis gaditana|type=mRNA|length=809bp
ACGTGTCAACGTACATTATTTTTGGGTGTCAATCAACTCTTGGTATTCTC
ATTAAGTGTGTTTTGATTCAACCAAACTTGCCGGATTCTTTGTTGTTGAT
AACCTCCCCACCCCCTTGCCTCAAAGCCAATGCACCATTTTTTAAGCCTG
ACCTGTAGACCATCACCATTTATATTCCGCAAACGCAATTTAGGGGCTTA
CAATACTTCATATTCTCCGCAAAATGCGTCACCGATGCCTGGTTCGCTCT
TCTATTTCGTCCAGGAGGTGCCATGTTGCTTTCTGCCTCTTTGTGTCATG
CCCAGCGCTTGCTCCTTCTTGGGATCAGAGTCACCATCTCTCAAAGCTTC
TGCGTGCTCGAATGCGTAGCAATGGCGGAAAATATCTTGCCTTCTCCTCC
TTGCCGCCTTTTCCTGCCCGCCGGGGTCGGAAACGGGTGCTGATCGAAGG
GGCGGGCATAGCGGGGCTGTCCTTAGCATATTTTTTGAAGCGTTTCTTAC
CAGAAACATACGAACCGCTCATCGTGGAAAAGCGAAAGGAGGGAGAGGTA
AGCGTGCACAATGGAAGAGGAGAGCATGGCGGCAGGAAGAGAGGGTATAC
GGCATCCAAATGAGGAAGAGGCAAAGAGGGGGAGGGAAGGAGGAAAGTGT
ATCCATTTCGTATAATGCGTGGTGAGTGAATGAACGTCGTTTTCCCCGTA
GTCTTTCATCTTCTCTTTATTGAAGCCCTCTTTGCAATATACCCAGCCGC
GTATTTCATGATCACCGCAGCTCAGGCAGCGGTAGGCTGACGGACCTCCC
CTTCCCACC

protein sequence of rna7620

>rna7620-protein ID=rna7620-protein|Name=rna7620|organism=Nannochloropsis gaditana|type=polypeptide|length=163bp
MSAPRCRCVLPLLRHFLLVLLLSRVALPFVLPCLHRPLSAPSTRVFLSSD
GSTATNLQASPTPALAVDARGRSRLPWRKEGYSYWSWQGHHIHYVALEGE
DSRQANKPPIVLIHGFGASAFHWRYNIPALARTHRVFALDLLGFGLSDKP
LTEYNAEVGKEGG

mRNA from alignment at CM002472.1:398642..399628-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7620 ID=rna7620|Name=rna7620|organism=Nannochloropsis gaditana|type=mRNA|length=987bp|location=Sequence derived from alignment at CM002472.1:398642..399628- (Nannochloropsis gaditana)
AGGTGGCAGCATGTCAGCGCCACGCTGCCGCTGCGTCCTTCCTCTTCTGC
GTCACTTTCTCCTTGTCCTCCTCCTTTCCCGGGTCGCCCTCCCCTTCGTC
CTTCCCTGCCTCCATCGTCCCCTTTCCGCGCCTTCCACTCGCGTATTCCT
CTCATCTGATGGCAGCACGGCCACGAACCTCCAAGCCTCTCCAACTCCTG
CATTGGCGGTTGATGCCCGCGGACGGTCCCGGCTCCCGTGGAGGAAGGAA
GGTTACAGCTACTGGAGTTGGCAGGGGCATCACATCCATTACGTGGCGTT
GGGTACGGATTGTAGCATAGGGGAAGGGGAGAAGGGGTGTTCAGGACGAC
CGAACAGAGGTGGCCATATTGTTTATCATATTGCCTTCCTTTCCTGCTTG
CGGGCCGTAACAATGGCTGCGAGGCCCGATCCTTCCTCCCTCTCACGTCA
CAACCATCCCTCCCCGTCCATTTTTACGTGTCGATGTGCACACCTTGGCC
AGAAGGAGAAGACAGCCGGCAGGCGAACAAGCCTCCCATCGTCTTGATCC
ACGGGTTTGGGGCCTCGGTGCGTGCGACCCAGAGTTGGAGGGAGGAGGGG
GGGAGGAAGGGTGGAGGGAGAGGGGGGGAGGCGTGTGGGGTCTAGGAGGG
GATCAGGCCGCCTGGGCGTAGAGAAGGGAAATCTTCCAGACCTGGGAGAT
TTGGTGGGGGACGAAGGGGTGACGGAACCGGACGGAAGAGGACGCACGGG
GGGAAGAGGAAGGAAGGTAGAGGGAGGAGGACGAGGTAGAAAAGGAAGGT
AGGGGGAGGAGGACGATGCGGACCGACGGGCTCCCCTCCTCTTTCCTCTT
TCGCAGGCATTTCACTGGCGGTACAACATTCCTGCCCTGGCCCGCACCCA
CCGGGTGTTTGCCCTCGACCTCCTCGGTTTCGGCCTCAGCGACAAGCCTC
TCACAGAGTACAACGCCGAGGTGGGGAAGGAGGGAGG

Coding sequence (CDS) from alignment at CM002472.1:398642..399628-

>rna7620 ID=rna7620|Name=rna7620|organism=Nannochloropsis gaditana|type=CDS|length=1464bp|location=Sequence derived from alignment at CM002472.1:398642..399628- (Nannochloropsis gaditana)
GCATTTCACTGGCGGTACAACATTCCTGCCCTGGCCCGCACCCACCGGGT
GTTTGCCCTCGACCTCCTCGGTTTCGGCCTCAGCGACAAGCCTCTCACAG
AGTACAACGCCGAGGTGGGGAAGGAGGGAGGAAGGAGAAGACAGCCGGCA
GGCGAACAAGCCTCCCATCGTCTTGATCCACGGGTTTGGGGCCTCGATGT
CAGCGCCACGCTGCCGCTGCGTCCTTCCTCTTCTGCGTCACTTTCTCCTT
GTCCTCCTCCTTTCCCGGGTCGCCCTCCCCTTCGTCCTTCCCTGCCTCCA
TCGTCCCCTTTCCGCGCCTTCCACTCGCGTATTCCTCTCATCTGATGGCA
GCACGGCCACGAACCTCCAAGCCTCTCCAACTCCTGCATTGGCGGTTGAT
GCCCGCGGACGGTCCCGGCTCCCGTGGAGGAAGGAAGGTTACAGCTACTG
GAGTTGGCAGGGGCATCACATCCATTACGTGGCGTTGGGCATTTCACTGG
CGGTACAACATTCCTGCCCTGGCCCGCACCCACCGGGTGTTTGCCCTCGA
CCTCCTCGGTTTCGGCCTCAGCGACAAGCCTCTCACAGAGTACAACGCCG
AGGTGGGGAAGGAGGGAGGAAGGAGAAGACAGCCGGCAGGCGAACAAGCC
TCCCATCGTCTTGATCCACGGGTTTGGGGCCTCGATGTCAGCGCCACGCT
GCCGCTGCGTCCTTCCTCTTCTGCGTCACTTTCTCCTTGTCCTCCTCCTT
TCCCGGGTCGCCCTCCCCTTCGTCCTTCCCTGCCTCCATCGTCCCCTTTC
CGCGCCTTCCACTCGCGTATTCCTCTCATCTGATGGCAGCACGGCCACGA
ACCTCCAAGCCTCTCCAACTCCTGCATTGGCGGTTGATGCCCGCGGACGG
TCCCGGCTCCCGTGGAGGAAGGAAGGTTACAGCTACTGGAGTTGGCAGGG
GCATCACATCCATTACGTGGCGTTGGGCATTTCACTGGCGGTACAACATT
CCTGCCCTGGCCCGCACCCACCGGGTGTTTGCCCTCGACCTCCTCGGTTT
CGGCCTCAGCGACAAGCCTCTCACAGAGTACAACGCCGAGGTGGGGAAGG
AGGGAGGAAGGAGAAGACAGCCGGCAGGCGAACAAGCCTCCCATCGTCTT
GATCCACGGGTTTGGGGCCTCGATGTCAGCGCCACGCTGCCGCTGCGTCC
TTCCTCTTCTGCGTCACTTTCTCCTTGTCCTCCTCCTTTCCCGGGTCGCC
CTCCCCTTCGTCCTTCCCTGCCTCCATCGTCCCCTTTCCGCGCCTTCCAC
TCGCGTATTCCTCTCATCTGATGGCAGCACGGCCACGAACCTCCAAGCCT
CTCCAACTCCTGCATTGGCGGTTGATGCCCGCGGACGGTCCCGGCTCCCG
TGGAGGAAGGAAGGTTACAGCTACTGGAGTTGGCAGGGGCATCACATCCA
TTACGTGGCGTTGG

Synonyms

Publications