EWM23072.1, cds7600 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23072.1 vs. NCBI_GenBank
Match: gi|585103901|gb|EWM23072.1| (alpha beta fold family protein, partial [Nannochloropsis gaditana]) HSP 1 Score: 333.183 bits (853), Expect = 1.193e-115 Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0
Query: 1 MSAPRCRCVLPLLRHFLLVLLLSRVALPFVLPCLHRPLSAPSTRVFLSSDGSTATNLQASPTPALAVDARGRSRLPWRKEGYSYWSWQGHHIHYVALEGEDSRQANKPPIVLIHGFGASAFHWRYNIPALARTHRVFALDLLGFGLSDKPLTEYNAEVGKEGG 163
MSAPRCRCVLPLLRHFLLVLLLSRVALPFVLPCLHRPLSAPSTRVFLSSDGSTATNLQASPTPALAVDARGRSRLPWRKEGYSYWSWQGHHIHYVALEGEDSRQANKPPIVLIHGFGASAFHWRYNIPALARTHRVFALDLLGFGLSDKPLTEYNAEVGKEGG
Sbjct: 1 MSAPRCRCVLPLLRHFLLVLLLSRVALPFVLPCLHRPLSAPSTRVFLSSDGSTATNLQASPTPALAVDARGRSRLPWRKEGYSYWSWQGHHIHYVALEGEDSRQANKPPIVLIHGFGASAFHWRYNIPALARTHRVFALDLLGFGLSDKPLTEYNAEVGKEGG 163
BLAST of EWM23072.1 vs. NCBI_GenBank
Match: gi|1117456878|ref|XP_019423428.1| (PREDICTED: pheophytinase, chloroplastic isoform X2 [Lupinus angustifolius] >gi|1102694068|gb|OIV93594.1| hypothetical protein TanjilG_04826 [Lupinus angustifolius]) HSP 1 Score: 134.035 bits (336), Expect = 3.183e-35 Identity = 66/108 (61.11%), Postives = 80/108 (74.07%), Query Frame = 0
Query: 54 ATNLQASPTPALAVDARGRSRLPWRKEGYSYWSWQGHHIHYVALEGEDSRQANKPPIVLIHGFGASAFHWRYNIPALARTHRVFALDLLGFGLSDKPLTEYNAEVGKE 161
A+ L P P+ +G RLP++ +GY+YW+W+GH IHYV ++GE S PIVLIHGFGASAFHWRYNIP LA+TH+V+ALDLLGFG SDK L EYNA V KE
Sbjct: 2 ASTLTVEPEPS-----QGLERLPYKPDGYNYWTWRGHKIHYV-VQGEGS------PIVLIHGFGASAFHWRYNIPELAKTHKVYALDLLGFGWSDKALVEYNAMVWKE 97
BLAST of EWM23072.1 vs. NCBI_GenBank
Match: gi|1117456876|ref|XP_019423427.1| (PREDICTED: pheophytinase, chloroplastic isoform X1 [Lupinus angustifolius]) HSP 1 Score: 134.035 bits (336), Expect = 7.134e-35 Identity = 66/108 (61.11%), Postives = 80/108 (74.07%), Query Frame = 0
Query: 54 ATNLQASPTPALAVDARGRSRLPWRKEGYSYWSWQGHHIHYVALEGEDSRQANKPPIVLIHGFGASAFHWRYNIPALARTHRVFALDLLGFGLSDKPLTEYNAEVGKE 161
A+ L P P+ +G RLP++ +GY+YW+W+GH IHYV ++GE S PIVLIHGFGASAFHWRYNIP LA+TH+V+ALDLLGFG SDK L EYNA V KE
Sbjct: 52 ASTLTVEPEPS-----QGLERLPYKPDGYNYWTWRGHKIHYV-VQGEGS------PIVLIHGFGASAFHWRYNIPELAKTHKVYALDLLGFGWSDKALVEYNAMVWKE 147
BLAST of EWM23072.1 vs. NCBI_GenBank
Match: gi|1021469117|ref|XP_016183943.1| (pheophytinase, chloroplastic [Arachis ipaensis]) HSP 1 Score: 131.339 bits (329), Expect = 8.873e-34 Identity = 70/132 (53.03%), Postives = 88/132 (66.67%), Query Frame = 0
Query: 31 LPCLHRPLSAPSTRVF-LSSDGSTATNLQASPTPALAVDARGRSRLPWRKEGYSYWSWQGHHIHYVALEGEDSRQANKPPIVLIHGFGASAFHWRYNIPALARTHRVFALDLLGFGLSDKPLTEYNAEVGKE 161
P HR S R F L ++ + AS A A ++G RLP++ EGY+YW+W+GH IHYV ++GE S PIVLIHGFGASAFHWRYNIP LA+ H+V+ALDLLGFG SDK L EY+A V ++
Sbjct: 25 FPYYHRSKCEMSRRSFALKGIVASGVSSMASTLTAEAQPSQGVGRLPYKPEGYNYWTWRGHKIHYV-VQGEGS------PIVLIHGFGASAFHWRYNIPELAKRHKVYALDLLGFGWSDKALIEYDAMVWRD 149
BLAST of EWM23072.1 vs. NCBI_GenBank
Match: gi|1011992499|ref|XP_015950979.1| (pheophytinase, chloroplastic [Arachis duranensis]) HSP 1 Score: 131.339 bits (329), Expect = 9.159e-34 Identity = 70/132 (53.03%), Postives = 88/132 (66.67%), Query Frame = 0
Query: 31 LPCLHRPLSAPSTRVF-LSSDGSTATNLQASPTPALAVDARGRSRLPWRKEGYSYWSWQGHHIHYVALEGEDSRQANKPPIVLIHGFGASAFHWRYNIPALARTHRVFALDLLGFGLSDKPLTEYNAEVGKE 161
P HR S R F L ++ + AS A A ++G RLP++ EGY+YW+W+GH IHYV ++GE S PIVLIHGFGASAFHWRYNIP LA+ H+V+ALDLLGFG SDK L EY+A V ++
Sbjct: 25 FPYYHRSKCEMSRRSFALKGIVASGVSSMASTLTAEAQPSQGVGRLPYKPEGYNYWTWRGHKIHYV-VQGEGS------PIVLIHGFGASAFHWRYNIPELAKRHKVYALDLLGFGWSDKALIEYDAMVWRD 149
BLAST of EWM23072.1 vs. NCBI_GenBank
Match: gi|1150087819|ref|XP_020229554.1| (pheophytinase, chloroplastic isoform X1 [Cajanus cajan]) HSP 1 Score: 128.257 bits (321), Expect = 1.128e-32 Identity = 68/143 (47.55%), Postives = 92/143 (64.34%), Query Frame = 0
Query: 22 LSRVALPFVLPCLHRPLSAPSTRVFLSSDGSTATNLQASPTPALA---VDARGRSRLPWRKEGYSYWSWQGHHIHYVALEGEDSRQANKPPIVLIHGFGASAFHWRYNIPALARTHRVFALDLLGFGLSDKPLTEYNAEVGKE 161
L++ L LP R S R F + G A+ + + + A ++G RLP++ EGY+YW+W+GH IHYV ++GE S P+VLIHGFGASAFHWRYNIP LA+ H+V+ALDL+GFG SDK L EY+A V ++
Sbjct: 16 LTKTTLVAPLPLYQRSKCEMSRRAF-AVKGIVASGVSVAASTLTAEAESSSKGFERLPYKPEGYNYWTWRGHKIHYV-VQGEGS------PLVLIHGFGASAFHWRYNIPELAKKHKVYALDLIGFGWSDKALIEYDAMVWRD 150
BLAST of EWM23072.1 vs. NCBI_GenBank
Match: gi|356559384|ref|XP_003547979.1| (PREDICTED: pheophytinase, chloroplastic isoform X1 [Glycine max] >gi|947058830|gb|KRH08236.1| hypothetical protein GLYMA_16G138000 [Glycine max] >gi|947058831|gb|KRH08237.1| hypothetical protein GLYMA_16G138000 [Glycine max]) HSP 1 Score: 128.257 bits (321), Expect = 1.201e-32 Identity = 70/146 (47.95%), Postives = 91/146 (62.33%), Query Frame = 0
Query: 22 LSRVALPFVLPCLHRPLSAPSTRVFL------SSDGSTATNLQASPTPALAVDARGRSRLPWRKEGYSYWSWQGHHIHYVALEGEDSRQANKPPIVLIHGFGASAFHWRYNIPALARTHRVFALDLLGFGLSDKPLTEYNAEVGKE 161
L++ L +P R S R F S A+ L A P+ ++G RLP++ EGY+YW+W+GH IHYV ++GE S PIVLIHGFGASAFHWRYNIP LA+ H+V+ALDLLGFG SDK L +Y+A V ++
Sbjct: 16 LTKTTLVAPIPLYQRSKCEMSRRSFAFKGIVASGVSVAASTLTAEAEPS----SKGFERLPYKPEGYNYWTWRGHKIHYV-VQGEGS------PIVLIHGFGASAFHWRYNIPELAKKHKVYALDLLGFGWSDKALIDYDAMVWRD 150
BLAST of EWM23072.1 vs. NCBI_GenBank
Match: gi|571528213|ref|XP_006599374.1| (PREDICTED: pheophytinase, chloroplastic isoform X2 [Glycine max] >gi|947058832|gb|KRH08238.1| hypothetical protein GLYMA_16G138000 [Glycine max]) HSP 1 Score: 127.102 bits (318), Expect = 1.822e-32 Identity = 62/108 (57.41%), Postives = 80/108 (74.07%), Query Frame = 0
Query: 54 ATNLQASPTPALAVDARGRSRLPWRKEGYSYWSWQGHHIHYVALEGEDSRQANKPPIVLIHGFGASAFHWRYNIPALARTHRVFALDLLGFGLSDKPLTEYNAEVGKE 161
A+ L A P+ ++G RLP++ EGY+YW+W+GH IHYV ++GE S PIVLIHGFGASAFHWRYNIP LA+ H+V+ALDLLGFG SDK L +Y+A V ++
Sbjct: 20 ASTLTAEAEPS----SKGFERLPYKPEGYNYWTWRGHKIHYV-VQGEGS------PIVLIHGFGASAFHWRYNIPELAKKHKVYALDLLGFGWSDKALIDYDAMVWRD 116
BLAST of EWM23072.1 vs. NCBI_GenBank
Match: gi|950995912|ref|XP_014505552.1| (PREDICTED: pheophytinase, chloroplastic [Vigna radiata var. radiata]) HSP 1 Score: 127.487 bits (319), Expect = 2.174e-32 Identity = 61/106 (57.55%), Postives = 79/106 (74.53%), Query Frame = 0
Query: 56 NLQASPTPALAVDARGRSRLPWRKEGYSYWSWQGHHIHYVALEGEDSRQANKPPIVLIHGFGASAFHWRYNIPALARTHRVFALDLLGFGLSDKPLTEYNAEVGKE 161
L A P P+ ++G RLP++ EGY+YW+W+GH IHYV ++GE S PIVLIHGFGASAFHWRYNIP LA+ H+V+A+DLLGFG SDK L +Y+A V ++
Sbjct: 52 TLTAEPLPS----SKGFERLPYKAEGYNYWTWRGHKIHYV-VQGEGS------PIVLIHGFGASAFHWRYNIPELAKKHKVYAIDLLGFGWSDKALIDYDAMVWRD 146
BLAST of EWM23072.1 vs. NCBI_GenBank
Match: gi|388507222|gb|AFK41677.1| (unknown [Lotus japonicus]) HSP 1 Score: 127.487 bits (319), Expect = 2.175e-32 Identity = 62/108 (57.41%), Postives = 79/108 (73.15%), Query Frame = 0
Query: 54 ATNLQASPTPALAVDARGRSRLPWRKEGYSYWSWQGHHIHYVALEGEDSRQANKPPIVLIHGFGASAFHWRYNIPALARTHRVFALDLLGFGLSDKPLTEYNAEVGKE 161
A+ L A P PA +G RLP++ EGY+YW+W+GH IHYV ++GE S PIVLIHGFGAS FHWRYNIP LA+ H+V+A+DLLGFG S+K L +Y+A V K+
Sbjct: 54 ASTLTAEPEPA-----QGSERLPFKPEGYNYWTWRGHKIHYV-VQGEGS------PIVLIHGFGASLFHWRYNIPELAKKHKVYAIDLLGFGWSEKALVDYDAMVWKD 149 The following BLAST results are available for this feature:
BLAST of EWM23072.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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