EWM23072.1, cds7600 (CDS) Nannochloropsis gaditana

Overview
NameEWM23072.1
Unique Namecds7600
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:399327..399618 -
Alignment locationCM002472.1:399062..399126 -
Alignment locationCM002472.1:398642..398772 -

Link to JBrowse

Properties
Property NameValue
Start range398642
Start range.
Protein idEWM23072.1
Productalpha beta fold family protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100598g1.10410.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:399327..399618 -
CM002472.1supercontigCM002472.1:399062..399126 -
CM002472.1supercontigCM002472.1:398642..398772 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR000073AB_hydrolase_1
IPR029058AB_hydrolase
Homology
BLAST of EWM23072.1 vs. NCBI_GenBank
Match: gi|585103901|gb|EWM23072.1| (alpha beta fold family protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 333.183 bits (853), Expect = 1.193e-115
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0
Query:    1 MSAPRCRCVLPLLRHFLLVLLLSRVALPFVLPCLHRPLSAPSTRVFLSSDGSTATNLQASPTPALAVDARGRSRLPWRKEGYSYWSWQGHHIHYVALEGEDSRQANKPPIVLIHGFGASAFHWRYNIPALARTHRVFALDLLGFGLSDKPLTEYNAEVGKEGG 163
            MSAPRCRCVLPLLRHFLLVLLLSRVALPFVLPCLHRPLSAPSTRVFLSSDGSTATNLQASPTPALAVDARGRSRLPWRKEGYSYWSWQGHHIHYVALEGEDSRQANKPPIVLIHGFGASAFHWRYNIPALARTHRVFALDLLGFGLSDKPLTEYNAEVGKEGG
Sbjct:    1 MSAPRCRCVLPLLRHFLLVLLLSRVALPFVLPCLHRPLSAPSTRVFLSSDGSTATNLQASPTPALAVDARGRSRLPWRKEGYSYWSWQGHHIHYVALEGEDSRQANKPPIVLIHGFGASAFHWRYNIPALARTHRVFALDLLGFGLSDKPLTEYNAEVGKEGG 163          
BLAST of EWM23072.1 vs. NCBI_GenBank
Match: gi|1117456878|ref|XP_019423428.1| (PREDICTED: pheophytinase, chloroplastic isoform X2 [Lupinus angustifolius] >gi|1102694068|gb|OIV93594.1| hypothetical protein TanjilG_04826 [Lupinus angustifolius])

HSP 1 Score: 134.035 bits (336), Expect = 3.183e-35
Identity = 66/108 (61.11%), Postives = 80/108 (74.07%), Query Frame = 0
Query:   54 ATNLQASPTPALAVDARGRSRLPWRKEGYSYWSWQGHHIHYVALEGEDSRQANKPPIVLIHGFGASAFHWRYNIPALARTHRVFALDLLGFGLSDKPLTEYNAEVGKE 161
            A+ L   P P+     +G  RLP++ +GY+YW+W+GH IHYV ++GE S      PIVLIHGFGASAFHWRYNIP LA+TH+V+ALDLLGFG SDK L EYNA V KE
Sbjct:    2 ASTLTVEPEPS-----QGLERLPYKPDGYNYWTWRGHKIHYV-VQGEGS------PIVLIHGFGASAFHWRYNIPELAKTHKVYALDLLGFGWSDKALVEYNAMVWKE 97          
BLAST of EWM23072.1 vs. NCBI_GenBank
Match: gi|1117456876|ref|XP_019423427.1| (PREDICTED: pheophytinase, chloroplastic isoform X1 [Lupinus angustifolius])

HSP 1 Score: 134.035 bits (336), Expect = 7.134e-35
Identity = 66/108 (61.11%), Postives = 80/108 (74.07%), Query Frame = 0
Query:   54 ATNLQASPTPALAVDARGRSRLPWRKEGYSYWSWQGHHIHYVALEGEDSRQANKPPIVLIHGFGASAFHWRYNIPALARTHRVFALDLLGFGLSDKPLTEYNAEVGKE 161
            A+ L   P P+     +G  RLP++ +GY+YW+W+GH IHYV ++GE S      PIVLIHGFGASAFHWRYNIP LA+TH+V+ALDLLGFG SDK L EYNA V KE
Sbjct:   52 ASTLTVEPEPS-----QGLERLPYKPDGYNYWTWRGHKIHYV-VQGEGS------PIVLIHGFGASAFHWRYNIPELAKTHKVYALDLLGFGWSDKALVEYNAMVWKE 147          
BLAST of EWM23072.1 vs. NCBI_GenBank
Match: gi|1021469117|ref|XP_016183943.1| (pheophytinase, chloroplastic [Arachis ipaensis])

HSP 1 Score: 131.339 bits (329), Expect = 8.873e-34
Identity = 70/132 (53.03%), Postives = 88/132 (66.67%), Query Frame = 0
Query:   31 LPCLHRPLSAPSTRVF-LSSDGSTATNLQASPTPALAVDARGRSRLPWRKEGYSYWSWQGHHIHYVALEGEDSRQANKPPIVLIHGFGASAFHWRYNIPALARTHRVFALDLLGFGLSDKPLTEYNAEVGKE 161
             P  HR     S R F L    ++  +  AS   A A  ++G  RLP++ EGY+YW+W+GH IHYV ++GE S      PIVLIHGFGASAFHWRYNIP LA+ H+V+ALDLLGFG SDK L EY+A V ++
Sbjct:   25 FPYYHRSKCEMSRRSFALKGIVASGVSSMASTLTAEAQPSQGVGRLPYKPEGYNYWTWRGHKIHYV-VQGEGS------PIVLIHGFGASAFHWRYNIPELAKRHKVYALDLLGFGWSDKALIEYDAMVWRD 149          
BLAST of EWM23072.1 vs. NCBI_GenBank
Match: gi|1011992499|ref|XP_015950979.1| (pheophytinase, chloroplastic [Arachis duranensis])

HSP 1 Score: 131.339 bits (329), Expect = 9.159e-34
Identity = 70/132 (53.03%), Postives = 88/132 (66.67%), Query Frame = 0
Query:   31 LPCLHRPLSAPSTRVF-LSSDGSTATNLQASPTPALAVDARGRSRLPWRKEGYSYWSWQGHHIHYVALEGEDSRQANKPPIVLIHGFGASAFHWRYNIPALARTHRVFALDLLGFGLSDKPLTEYNAEVGKE 161
             P  HR     S R F L    ++  +  AS   A A  ++G  RLP++ EGY+YW+W+GH IHYV ++GE S      PIVLIHGFGASAFHWRYNIP LA+ H+V+ALDLLGFG SDK L EY+A V ++
Sbjct:   25 FPYYHRSKCEMSRRSFALKGIVASGVSSMASTLTAEAQPSQGVGRLPYKPEGYNYWTWRGHKIHYV-VQGEGS------PIVLIHGFGASAFHWRYNIPELAKRHKVYALDLLGFGWSDKALIEYDAMVWRD 149          
BLAST of EWM23072.1 vs. NCBI_GenBank
Match: gi|1150087819|ref|XP_020229554.1| (pheophytinase, chloroplastic isoform X1 [Cajanus cajan])

HSP 1 Score: 128.257 bits (321), Expect = 1.128e-32
Identity = 68/143 (47.55%), Postives = 92/143 (64.34%), Query Frame = 0
Query:   22 LSRVALPFVLPCLHRPLSAPSTRVFLSSDGSTATNLQASPTPALA---VDARGRSRLPWRKEGYSYWSWQGHHIHYVALEGEDSRQANKPPIVLIHGFGASAFHWRYNIPALARTHRVFALDLLGFGLSDKPLTEYNAEVGKE 161
            L++  L   LP   R     S R F +  G  A+ +  + +   A     ++G  RLP++ EGY+YW+W+GH IHYV ++GE S      P+VLIHGFGASAFHWRYNIP LA+ H+V+ALDL+GFG SDK L EY+A V ++
Sbjct:   16 LTKTTLVAPLPLYQRSKCEMSRRAF-AVKGIVASGVSVAASTLTAEAESSSKGFERLPYKPEGYNYWTWRGHKIHYV-VQGEGS------PLVLIHGFGASAFHWRYNIPELAKKHKVYALDLIGFGWSDKALIEYDAMVWRD 150          
BLAST of EWM23072.1 vs. NCBI_GenBank
Match: gi|356559384|ref|XP_003547979.1| (PREDICTED: pheophytinase, chloroplastic isoform X1 [Glycine max] >gi|947058830|gb|KRH08236.1| hypothetical protein GLYMA_16G138000 [Glycine max] >gi|947058831|gb|KRH08237.1| hypothetical protein GLYMA_16G138000 [Glycine max])

HSP 1 Score: 128.257 bits (321), Expect = 1.201e-32
Identity = 70/146 (47.95%), Postives = 91/146 (62.33%), Query Frame = 0
Query:   22 LSRVALPFVLPCLHRPLSAPSTRVFL------SSDGSTATNLQASPTPALAVDARGRSRLPWRKEGYSYWSWQGHHIHYVALEGEDSRQANKPPIVLIHGFGASAFHWRYNIPALARTHRVFALDLLGFGLSDKPLTEYNAEVGKE 161
            L++  L   +P   R     S R F       S     A+ L A   P+    ++G  RLP++ EGY+YW+W+GH IHYV ++GE S      PIVLIHGFGASAFHWRYNIP LA+ H+V+ALDLLGFG SDK L +Y+A V ++
Sbjct:   16 LTKTTLVAPIPLYQRSKCEMSRRSFAFKGIVASGVSVAASTLTAEAEPS----SKGFERLPYKPEGYNYWTWRGHKIHYV-VQGEGS------PIVLIHGFGASAFHWRYNIPELAKKHKVYALDLLGFGWSDKALIDYDAMVWRD 150          
BLAST of EWM23072.1 vs. NCBI_GenBank
Match: gi|571528213|ref|XP_006599374.1| (PREDICTED: pheophytinase, chloroplastic isoform X2 [Glycine max] >gi|947058832|gb|KRH08238.1| hypothetical protein GLYMA_16G138000 [Glycine max])

HSP 1 Score: 127.102 bits (318), Expect = 1.822e-32
Identity = 62/108 (57.41%), Postives = 80/108 (74.07%), Query Frame = 0
Query:   54 ATNLQASPTPALAVDARGRSRLPWRKEGYSYWSWQGHHIHYVALEGEDSRQANKPPIVLIHGFGASAFHWRYNIPALARTHRVFALDLLGFGLSDKPLTEYNAEVGKE 161
            A+ L A   P+    ++G  RLP++ EGY+YW+W+GH IHYV ++GE S      PIVLIHGFGASAFHWRYNIP LA+ H+V+ALDLLGFG SDK L +Y+A V ++
Sbjct:   20 ASTLTAEAEPS----SKGFERLPYKPEGYNYWTWRGHKIHYV-VQGEGS------PIVLIHGFGASAFHWRYNIPELAKKHKVYALDLLGFGWSDKALIDYDAMVWRD 116          
BLAST of EWM23072.1 vs. NCBI_GenBank
Match: gi|950995912|ref|XP_014505552.1| (PREDICTED: pheophytinase, chloroplastic [Vigna radiata var. radiata])

HSP 1 Score: 127.487 bits (319), Expect = 2.174e-32
Identity = 61/106 (57.55%), Postives = 79/106 (74.53%), Query Frame = 0
Query:   56 NLQASPTPALAVDARGRSRLPWRKEGYSYWSWQGHHIHYVALEGEDSRQANKPPIVLIHGFGASAFHWRYNIPALARTHRVFALDLLGFGLSDKPLTEYNAEVGKE 161
             L A P P+    ++G  RLP++ EGY+YW+W+GH IHYV ++GE S      PIVLIHGFGASAFHWRYNIP LA+ H+V+A+DLLGFG SDK L +Y+A V ++
Sbjct:   52 TLTAEPLPS----SKGFERLPYKAEGYNYWTWRGHKIHYV-VQGEGS------PIVLIHGFGASAFHWRYNIPELAKKHKVYAIDLLGFGWSDKALIDYDAMVWRD 146          
BLAST of EWM23072.1 vs. NCBI_GenBank
Match: gi|388507222|gb|AFK41677.1| (unknown [Lotus japonicus])

HSP 1 Score: 127.487 bits (319), Expect = 2.175e-32
Identity = 62/108 (57.41%), Postives = 79/108 (73.15%), Query Frame = 0
Query:   54 ATNLQASPTPALAVDARGRSRLPWRKEGYSYWSWQGHHIHYVALEGEDSRQANKPPIVLIHGFGASAFHWRYNIPALARTHRVFALDLLGFGLSDKPLTEYNAEVGKE 161
            A+ L A P PA     +G  RLP++ EGY+YW+W+GH IHYV ++GE S      PIVLIHGFGAS FHWRYNIP LA+ H+V+A+DLLGFG S+K L +Y+A V K+
Sbjct:   54 ASTLTAEPEPA-----QGSERLPFKPEGYNYWTWRGHKIHYV-VQGEGS------PIVLIHGFGASLFHWRYNIPELAKKHKVYAIDLLGFGWSEKALVDYDAMVWKD 149          
The following BLAST results are available for this feature:
BLAST of EWM23072.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103901|gb|EWM23072.1|1.193e-115100.00alpha beta fold family protein, partial [Nannochlo... [more]
gi|1117456878|ref|XP_019423428.1|3.183e-3561.11PREDICTED: pheophytinase, chloroplastic isoform X2... [more]
gi|1117456876|ref|XP_019423427.1|7.134e-3561.11PREDICTED: pheophytinase, chloroplastic isoform X1... [more]
gi|1021469117|ref|XP_016183943.1|8.873e-3453.03pheophytinase, chloroplastic [Arachis ipaensis][more]
gi|1011992499|ref|XP_015950979.1|9.159e-3453.03pheophytinase, chloroplastic [Arachis duranensis][more]
gi|1150087819|ref|XP_020229554.1|1.128e-3247.55pheophytinase, chloroplastic isoform X1 [Cajanus c... [more]
gi|356559384|ref|XP_003547979.1|1.201e-3247.95PREDICTED: pheophytinase, chloroplastic isoform X1... [more]
gi|571528213|ref|XP_006599374.1|1.822e-3257.41PREDICTED: pheophytinase, chloroplastic isoform X2... [more]
gi|950995912|ref|XP_014505552.1|2.174e-3257.55PREDICTED: pheophytinase, chloroplastic [Vigna rad... [more]
gi|388507222|gb|AFK41677.1|2.175e-3257.41unknown [Lotus japonicus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7620rna7620Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications