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Properties
| Property Name | Value |
|---|
| Product | histone deacetylase 6 |
| Orig transcript id | gnl|cribi|Naga_100035g26.3371.mrna |
| Orig protein id | gnl|cribi|Naga_100035g26.3371 |
| Gene | HDAC6 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002456.1 | supercontig | CM002456.1:366389..368617 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna762 ID=rna762|Name=rna762|organism=Nannochloropsis gaditana|type=mRNA|length=1827bp
TGCGTACATAGAATGCTCTCTTGCCGCGCCATTTGGATGTGGTTGGGCTT
GTCCATGTGGATGGTTGCCTGCGAAACATGAAAGTCGCGGGGACGGGCAT
GGTTGTGTCATGAGCTATCCTCTTCTGCTTGGTAAGGAGGTCATCCCTGC
CTTTATTCATCTTCGCATTACTTCACAAGGGCAAGACCAATTACTCATTA
CTCACTGCATTCTCATTGAAACACACCCCGATTGTTGTTGGCGACAACAA
AGCAAAAGATGCCTAAGTCTATGAGTGACCGGGCGGGGGATATGCTTCTG
GGCGCGACATTCGCAGCGAGCTTGGGTGCCATAGCTTTCTTGCTTAAATT
GCGCAAAGGAAATGGAAAGGGCACCGACGAATCGGTGAAGAAAGCCATTC
TTGAAGCGCTAGATGAAGCGCGGCACTCACACCCCAACATCAAGCTTCCG
CACCAGCATGAACGGAAGATGCAGGAGCGTATGCGCCTCCATGCTGTTGA
AGACGACTTGCACAGCGAGGGACCCGAACGCCGCAAGGTGACCGTGCGCG
TCCCGGCTACGTCCGCAAACCTTGGGCCAGGCTACGATACGATCGGGATG
GCGCTTGACATGTGGAGCGAGATCACGGTGGAGCGGGCGGACCGCTTTGA
GATCGTCGCCGAGGGGGAGGGGGCCGACGACGTGCCCAAGGACGAAAGCA
ACCTGGTGGTGACGGGGATGAAGGCTGCCTTTGCTGCGGCCAAAAAACCT
ATGCCTCTCCTAAAGTACCACTGCATCAATCGGATTCCGTACGCGAGAGG
GCTGGGATCCTCTTCCGCTGCCATTGTCGCAGGCTTGATCGCTGGGCTGG
TTTTGGCAGGGCATCAGCTTCCCTGCTGGGGCTCGGAGGAGTTGCTGCAG
CTAGCGGCCTGCATCGAAGGACACCCGGATAACGTCGCTCCAGCAATATA
TGGTGGCATTCAGCTGGGCATACACACGGGGGAGAGGTGGACGAGCGAGC
GCGTGAACACCCCCCCTGGGATCCAGCTTGTCCTCTTCATACCGGACTTT
ATCGGCAAGACGAGCGATGCCCGGGGCGTGCTCGACTCAAAGGTGGAACG
AAAGGACGCCGTGTATAATATTGGTCGCGTGGCTTGGTTGGTGAACGCGC
TTTCGACCTCGAACCTAGACAACTTGCGCTTTGGGGTCGAGGACGCCCTC
CACCAGCCTCAGCGCGGGAAGGCGGTTTATAAGCACCTGTACCCATTAAT
CGAGGCTGCCAATGCAGCAGGTGCCAACGGCTGCTTTCTTTCAGGGGCGG
GTCCCACAGTCATGGCCATCACAAGCGGGGCTTCAGGGGATATCTTTGCT
CAGCGGCTCAGTGAGCGCGTGGATTGGACGGTGGCCGAGGCCATGGTTCG
GACAGCAGAAGCGGTGGGGGTGAAAGGACAGGTGTATATCACTAGTCCAG
CCGAGCACGGCGCGCAGGTTGTGAGTGCCGAGCCGGCTTTTTCGAGTAAA
GTGGTGCGATTCAAAGGGGATGTTTGAGGAGTAGGCGAAAGGCGTGTCTC
ACGCAAGCGAAGGAGGATGAAGAACAGGCACAGACAGTGGGATGGCTGAA
TAGCCCAACGGTTTAGAAAGATAGATATGCTTGTGAACGGTGCGTGGATT
TGCGTGTATGATCGAGGACGTACTTTTTGGACAGCATGTGCGCGACCAGC
GGTGGATGGGGCACTTCCAACACCTAGAAAAATAATGGAGAGCATGGCAC
ACGCGCAAAATCGCCTCTATGAAGCTGAATTGGCGGACTAACTAATGAAA
TTTACGTATTTACGGACCCCCTTTAAT back to topprotein sequence of rna762 >rna762-protein ID=rna762-protein|Name=rna762|organism=Nannochloropsis gaditana|type=polypeptide|length=521bp
MAASGEIILERESPNTCAGGIEAATRNRCKIKLDAFTGPPACPRVLHISP
SVATSTTKAPASQLDAAEKCANPPALHRLHLLPDRPTIRSCQTGIKRPRS
PSSGHIQDVWASVTSGAPVKSSNLETGLYYDAIHRLHYHPDRKHPERPER
VETILAHLASRGVLDKLTVLGQANAVEYGVMAGVHNRHYLRRLRRWENRG
AAAVEGSQQDRDQLLTKLQDEAEQFDSVYLNASSVTCARRATGGLLLLVD
RVVGTVGSTRSPEGLCPASTLSDSARPHAFNKVSDSTIHERSTDVSHSPP
RLRNGLALIRPPGHHAESHSARGFCLVNSVAVAAKHAREHLGLSKVLICD
WDVHHGQGTQEMFWKDPSVLYFSVHRHDHGRFWPGSGSPERVGEGEGEGY
TINVAWNQGGMGDAEYRQVWKKILLPVARAFAPELILVSAGFDGAQGDPM
GGCEITPRAGFGTMARMLVEGVPSAEGRVVLALEGGYRLSILGECVEACL
EALTGPSEGGGGKRTCWERMT back to topmRNA from alignment at CM002456.1:366389..368617+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna762 ID=rna762|Name=rna762|organism=Nannochloropsis gaditana|type=mRNA|length=2229bp|location=Sequence derived from alignment at CM002456.1:366389..368617+ (Nannochloropsis gaditana)
TCTTTTCGAAATGTATGCACCCCCTTTTGTCTTTCCCTTTGTGTATTTAG
TAGCGATCGACGCGAAATCATGGGCGGTATCGCGCTCTCCTACTATAGTA
GTCCAGGTCATGGCCCGGCTGCTGGCGTCAACAGACCTTTCCAAGAAAAG
CATTCTACTTTCCCAAAACCTGTTTCATGGCAACAGATACTAACTTATAT
CATCAAAATGCTTCATGTGAAGCTGCTCAGGGGTAACGAGTATGGCGGCG
TCAGGGGAGATCATTCTTGAAAGAGAGAGCCCCAACACATGCGCCGGTGG
GATCGAAGCAGCCACGAGGAATCGCTGCAAAATCAAGCTCGATGCCTTCA
CAGGCCCACCTGCCTGCCCTCGAGTCCTGCACATATCGCCATCTGTTGCA
ACGTCAACCACTAAAGCCCCCGCCTCGCAACTGGACGCCGCCGAGAAGTG
CGCGAATCCGCCTGCGTTGCACCGCCTGCATCTACTTCCCGACCGACCTA
CCATCCGATCATGTCAAACTGGGATAAAGCGGCCACGCTCACCCAGCTCC
GGTCATATACAGGATGTATGGGCCTCAGTGACATCAGGTGCACCTGTGAA
AAGCAGCAATTTGGAGACAGGGTTGTACTACGACGCCATCCACCGGCTTC
ATTATCATCCAGACAGAAAGCACCCGGAAAGGCCTGAACGTGTGGAAACT
ATATTGGCACACCTGGCGAGCCGCGGAGTGCTGGATAAACTGACTGTTCT
TGGCCAGGCAAACGCGGTGGAATACGGTGTCATGGCGGGGGTGCACAATC
GACATTACTTGCGGCGTCTTCGACGATGGGAAAATCGGGGCGCGGCGGCA
GTTGAGGGAAGCCAGCAGGACAGGGACCAATTGTTGACGAAATTGCAAGA
TGAAGCAGAGCAATTTGACTCAGTTTACCTGAACGCGTCTTCCGTGACGT
GTGCCCGCAGGGCAACAGGAGGCTTGCTGCTTTTGGTGGACCGGGTGGTG
GGGACTGTGGGGTCCACGCGTTCTCCCGAGGGCCTTTGTCCCGCATCCAC
CTTATCCGATTCTGCACGTCCACATGCTTTCAACAAGGTTTCGGATAGCA
CCATACACGAACGCAGCACCGACGtctcccactccccgccccgcctcaGG
AACGGGCTCGCCCTGATCCGCCCGCCGGGTCACCACGCCGAGTCTCACTC
TGCCAGGGGCTTTTGCCTCGTGAACAGCGTGGCCGTCGCTGCCAAGCATG
CACGAGAGCATTTGGGGTTGTCCAAGGTCCTGATCTGTGATTGGGACGTG
CACCACGGCCAAGGGACGCAGGAAATGTTCTGGAAAGATCCATCCGTGTT
GTACTTCTCAGTACACCGCCATGATCACGGACGCTTCTGGCCTGGAAGCG
GGTCTCCGGAAagggtaggggagggggagggagagggataCACCATTAAT
GTGGCATGGAATCAAGGAGGCATGGGTGACGCGGAATACAGGCAAGTTTG
GAAGAAGATATTGTTGCCCGTGGCGCGGGCCTTTGCACCGGAGCTGATTC
TGGTCTCGGCGGGTTTCGACGGGGCCCAGGGAGATCCTATGGGGGGCTGC
GAGATCACTCCCAGGGCGGGGTTTGGGACCATGGCGAGgatgctggtgga
gggcgtcCCAAGCgccgagggaagggtggtgctggcgctAGAGGGAGGCT
ACCGTCTGTCCATCTTGGGAGAGTGTGTAGAGGCCTGTCTGGAAGCTTTG
ACGGGCCCgagtgagggggggggggggaagaggacctgctgggagaggat
gacTTGAGGGATGGAAACGACGTTGTCATTCTTGAGGATGCTGCCGAGGC
TATAGAAAAGACGATTGCTGTGCATGGGAAATATTGGGCTTGTcttgaga
aggaagggaaggggcttAAGAAAAACTGATTCTATTAAGTCGGATGTGCA
TCTGACAACATGCATGTGCATGAAAAATTGTAGCTTGTGACTGCTTATTA
CGTGTTGTAGTAAGATGATGTGTTCTTGCCCCCCGGTACGGGCTTGGCGC
CGTAGGCGGGGTTGTAAATTTTATTGTAGCGCCTCAAAATACAACGGGAT
GAAGCAATTTTGCAAGGGAAGAATGGGAATGGGAAGTATGGACGTAATTT
TGGCTTGTGGATGCATAGATTTTCACTGGCCTCGATACATGCTTCCCACA
ACGTTACGTGTGAAGACCCCCACCTTATG back to topCoding sequence (CDS) from alignment at CM002456.1:366389..368617+ >rna762 ID=rna762|Name=rna762|organism=Nannochloropsis gaditana|type=CDS|length=1566bp|location=Sequence derived from alignment at CM002456.1:366389..368617+ (Nannochloropsis gaditana)
ATGGCGGCGTCAGGGGAGATCATTCTTGAAAGAGAGAGCCCCAACACATG
CGCCGGTGGGATCGAAGCAGCCACGAGGAATCGCTGCAAAATCAAGCTCG
ATGCCTTCACAGGCCCACCTGCCTGCCCTCGAGTCCTGCACATATCGCCA
TCTGTTGCAACGTCAACCACTAAAGCCCCCGCCTCGCAACTGGACGCCGC
CGAGAAGTGCGCGAATCCGCCTGCGTTGCACCGCCTGCATCTACTTCCCG
ACCGACCTACCATCCGATCATGTCAAACTGGGATAAAGCGGCCACGCTCA
CCCAGCTCCGGTCATATACAGGATGTATGGGCCTCAGTGACATCAGGTGC
ACCTGTGAAAAGCAGCAATTTGGAGACAGGGTTGTACTACGACGCCATCC
ACCGGCTTCATTATCATCCAGACAGAAAGCACCCGGAAAGGCCTGAACGT
GTGGAAACTATATTGGCACACCTGGCGAGCCGCGGAGTGCTGGATAAACT
GACTGTTCTTGGCCAGGCAAACGCGGTGGAATACGGTGTCATGGCGGGGG
TGCACAATCGACATTACTTGCGGCGTCTTCGACGATGGGAAAATCGGGGC
GCGGCGGCAGTTGAGGGAAGCCAGCAGGACAGGGACCAATTGTTGACGAA
ATTGCAAGATGAAGCAGAGCAATTTGACTCAGTTTACCTGAACGCGTCTT
CCGTGACGTGTGCCCGCAGGGCAACAGGAGGCTTGCTGCTTTTGGTGGAC
CGGGTGGTGGGGACTGTGGGGTCCACGCGTTCTCCCGAGGGCCTTTGTCC
CGCATCCACCTTATCCGATTCTGCACGTCCACATGCTTTCAACAAGGTTT
CGGATAGCACCATACACGAACGCAGCACCGACGtctcccactccccgccc
cgcctcaGGAACGGGCTCGCCCTGATCCGCCCGCCGGGTCACCACGCCGA
GTCTCACTCTGCCAGGGGCTTTTGCCTCGTGAACAGCGTGGCCGTCGCTG
CCAAGCATGCACGAGAGCATTTGGGGTTGTCCAAGGTCCTGATCTGTGAT
TGGGACGTGCACCACGGCCAAGGGACGCAGGAAATGTTCTGGAAAGATCC
ATCCGTGTTGTACTTCTCAGTACACCGCCATGATCACGGACGCTTCTGGC
CTGGAAGCGGGTCTCCGGAAagggtaggggagggggagggagagggataC
ACCATTAATGTGGCATGGAATCAAGGAGGCATGGGTGACGCGGAATACAG
GCAAGTTTGGAAGAAGATATTGTTGCCCGTGGCGCGGGCCTTTGCACCGG
AGCTGATTCTGGTCTCGGCGGGTTTCGACGGGGCCCAGGGAGATCCTATG
GGGGGCTGCGAGATCACTCCCAGGGCGGGGTTTGGGACCATGGCGAGgat
gctggtggagggcgtcCCAAGCgccgagggaagggtggtgctggcgctAG
AGGGAGGCTACCGTCTGTCCATCTTGGGAGAGTGTGTAGAGGCCTGTCTG
GAAGCTTTGACGGGCCCgagtgagggggggggggggaagaggacctgctg
ggagaggatgacTTGA back to top
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