EWM29907.1, cds762 (CDS) Nannochloropsis gaditana

Overview
NameEWM29907.1
Unique Namecds762
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:366630..368195 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29907.1
Producthistone deacetylase 6
Orig transcript idgnl|cribi|Naga_100035g26.3371.mrna
GeneHDAC6
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:366630..368195 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: INTERPRO
TermDefinition
IPR023801His_deacetylse_dom
IPR000286His_deacetylse
Homology
BLAST of EWM29907.1 vs. NCBI_GenBank
Match: gi|585112490|gb|EWM29907.1| (histone deacetylase 6 [Nannochloropsis gaditana])

HSP 1 Score: 1068.91 bits (2763), Expect = 0.000e+0
Identity = 521/521 (100.00%), Postives = 521/521 (100.00%), Query Frame = 0
Query:    1 MAASGEIILERESPNTCAGGIEAATRNRCKIKLDAFTGPPACPRVLHISPSVATSTTKAPASQLDAAEKCANPPALHRLHLLPDRPTIRSCQTGIKRPRSPSSGHIQDVWASVTSGAPVKSSNLETGLYYDAIHRLHYHPDRKHPERPERVETILAHLASRGVLDKLTVLGQANAVEYGVMAGVHNRHYLRRLRRWENRGAAAVEGSQQDRDQLLTKLQDEAEQFDSVYLNASSVTCARRATGGLLLLVDRVVGTVGSTRSPEGLCPASTLSDSARPHAFNKVSDSTIHERSTDVSHSPPRLRNGLALIRPPGHHAESHSARGFCLVNSVAVAAKHAREHLGLSKVLICDWDVHHGQGTQEMFWKDPSVLYFSVHRHDHGRFWPGSGSPERVGEGEGEGYTINVAWNQGGMGDAEYRQVWKKILLPVARAFAPELILVSAGFDGAQGDPMGGCEITPRAGFGTMARMLVEGVPSAEGRVVLALEGGYRLSILGECVEACLEALTGPSEGGGGKRTCWERMT 521
            MAASGEIILERESPNTCAGGIEAATRNRCKIKLDAFTGPPACPRVLHISPSVATSTTKAPASQLDAAEKCANPPALHRLHLLPDRPTIRSCQTGIKRPRSPSSGHIQDVWASVTSGAPVKSSNLETGLYYDAIHRLHYHPDRKHPERPERVETILAHLASRGVLDKLTVLGQANAVEYGVMAGVHNRHYLRRLRRWENRGAAAVEGSQQDRDQLLTKLQDEAEQFDSVYLNASSVTCARRATGGLLLLVDRVVGTVGSTRSPEGLCPASTLSDSARPHAFNKVSDSTIHERSTDVSHSPPRLRNGLALIRPPGHHAESHSARGFCLVNSVAVAAKHAREHLGLSKVLICDWDVHHGQGTQEMFWKDPSVLYFSVHRHDHGRFWPGSGSPERVGEGEGEGYTINVAWNQGGMGDAEYRQVWKKILLPVARAFAPELILVSAGFDGAQGDPMGGCEITPRAGFGTMARMLVEGVPSAEGRVVLALEGGYRLSILGECVEACLEALTGPSEGGGGKRTCWERMT
Sbjct:    1 MAASGEIILERESPNTCAGGIEAATRNRCKIKLDAFTGPPACPRVLHISPSVATSTTKAPASQLDAAEKCANPPALHRLHLLPDRPTIRSCQTGIKRPRSPSSGHIQDVWASVTSGAPVKSSNLETGLYYDAIHRLHYHPDRKHPERPERVETILAHLASRGVLDKLTVLGQANAVEYGVMAGVHNRHYLRRLRRWENRGAAAVEGSQQDRDQLLTKLQDEAEQFDSVYLNASSVTCARRATGGLLLLVDRVVGTVGSTRSPEGLCPASTLSDSARPHAFNKVSDSTIHERSTDVSHSPPRLRNGLALIRPPGHHAESHSARGFCLVNSVAVAAKHAREHLGLSKVLICDWDVHHGQGTQEMFWKDPSVLYFSVHRHDHGRFWPGSGSPERVGEGEGEGYTINVAWNQGGMGDAEYRQVWKKILLPVARAFAPELILVSAGFDGAQGDPMGGCEITPRAGFGTMARMLVEGVPSAEGRVVLALEGGYRLSILGECVEACLEALTGPSEGGGGKRTCWERMT 521          
BLAST of EWM29907.1 vs. NCBI_GenBank
Match: gi|1045393038|dbj|GAU24631.1| (hypothetical protein TSUD_208560, partial [Trifolium subterraneum])

HSP 1 Score: 264.233 bits (674), Expect = 2.125e-79
Identity = 146/384 (38.02%), Postives = 200/384 (52.08%), Query Frame = 0
Query:  126 TGLYYDAIHRLHYHPDR-KHPERPERVETILAHLASRGVLDKLTVLGQANAVEYGVMAGVHNRHYLRRLRRWENRGAAAVEGSQQDRDQLLTKLQDEAEQFDSVYLNASSVTCARRATGGLLLLVDRVVGTVGSTRSPEGLCPASTLSDSARPHAFNKVSDSTIHERSTDVSHSPPRLRNGLALIRPPGHHAESHSARGFCLVNSVAVAAKH---AREHLGLSKVLICDWDVHHGQGTQEMFWKDPSVLYFSVHRHDHGRFWPG--SGSPERVGEGEGEGYTINVAWNQGGMGDAEYRQVWKKILLPVARAFAPELILVSAGFDGAQGDPMGGCEITPRAGFGTMARMLVEGVPSAEGRVVLALEGGYRLSILGECVEACLEAL 503
             GL YD     H++PD  +HPE P R+  I   L + G+ D+   L   +A +  ++A VH++ ++ +++    +               +  ++  A + DS+Y N  S   A  A G  + +  RV                                                 L +  A+IRPPGHHAE   A GFCL N+VA+AA +        G+ K+LI DWDVHHG GTQ+MFW D  VL+FSVHRH++G F+P   +GS   +GEG G GY INV W  G  GDA+Y  VW  ILLPVA+ F P++I+VSAGFD A GDP+GGC +TP  GF  M + L++    AEGR+VL LEGGY L  + + + ACLE L
Sbjct:   19 VGLLYDERMCQHFNPDDDRHPETPNRIRAIWDKLQTTGITDRCINLDAVDAEDKHILA-VHSKKHVDQIKTISYKS--------------VNSMRKLAARLDSIYFNEGSTKSAYLAAGSAIEVAKRVASK---------------------------------------------ELNSAAAIIRPPGHHAEPDEAMGFCLFNNVAIAASYLLNENPEFGVKKILIVDWDVHHGNGTQKMFWNDSRVLFFSVHRHEYGSFYPADDNGSYNMIGEGAGAGYNINVPWENGRCGDADYFAVWDHILLPVAKEFNPDIIIVSAGFDAAVGDPLGGCRVTP-FGFSLMLKKLMD---LAEGRIVLVLEGGYNLDSIAKSMHACLEVL 338          
BLAST of EWM29907.1 vs. NCBI_GenBank
Match: gi|1079376745|ref|XP_018512120.1| (PREDICTED: histone deacetylase 5-like isoform X2 [Brassica rapa])

HSP 1 Score: 263.848 bits (673), Expect = 4.596e-79
Identity = 158/390 (40.51%), Postives = 210/390 (53.85%), Query Frame = 0
Query:  120 KSSNLETGLYYDAIHRLHYHPD-RKHPERPERVETILAHLASRGVLDKLTVLGQANAVEYGVMAGVHNRHYLRRLRRWENRGAAAVEGSQQDRDQLLTKLQDEAEQFDSVYLNASSVTCARRATGGLLLLVDRVVGTVGSTRSPEGLCPASTLSDSARPHAFNKVSDSTIHERSTDVSHSPPRLRNGLALIRPPGHHAESHSARGFCLVNSVAVAAKH---AREHLGLSKVLICDWDVHHGQGTQEMFWKDPSVLYFSVHRHDHGRFWP--GSGSPERVGEGEGEGYTINVAWNQGGMGDAEYRQVWKKILLPVARAFAPELILVSAGFDGAQGDPMGGCEITPRAGFGTMARMLVEGVPSAEGRVVLALEGGYRLSILGECVEACLEAL 503
            +S   + GL YD     H  PD   HPE P R++ I A L   G+  +  VLG   A E   +  VH + ++  ++R           S + +D    K+   A + DS+YLN  S   A  A G ++ + ++V          EG                                     L  G A++RPPGHHAE+  A G+CL N+VAVAA +    R  LG+ ++LI DWDVHHG GTQ+MFWKDP VL FSVHRHD G F+P    G  ++VGEG GEG+ INV W QG  GDA+Y  VW  IL+PV + F P+LILVSAGFD A GDP+GGC +TP  G+  M + L+E    A+G++V+ALEGGYRL I+ E    C++ L
Sbjct:    4 ESRKRKVGLLYDERMCKHDTPDGEDHPECPNRIKAIWAKLQLTGLAQRCVVLGGIKA-EDKHLQLVHTKEHVNLVKRL----------STKKKDSRRNKI---ASKLDSIYLNGGSSEAAYLAAGSVVEVAEKVA---------EG------------------------------------ELDCGFAIVRPPGHHAEADEAMGYCLFNNVAVAASYLVNQRPDLGIKRILIVDWDVHHGNGTQKMFWKDPRVLVFSVHRHDGGSFYPRGDDGDYDKVGEGAGEGFNINVPWEQGRCGDADYFAVWDHILIPVTKEFNPDLILVSAGFDAAIGDPLGGCLVTP-GGYSVMLQKLME---FAQGKIVMALEGGYRLDIVAESSVMCVQVL 330          
BLAST of EWM29907.1 vs. NCBI_GenBank
Match: gi|685278401|ref|XP_009130144.1| (PREDICTED: histone deacetylase 5-like isoform X1 [Brassica rapa])

HSP 1 Score: 266.159 bits (679), Expect = 1.040e-78
Identity = 158/390 (40.51%), Postives = 210/390 (53.85%), Query Frame = 0
Query:  120 KSSNLETGLYYDAIHRLHYHPD-RKHPERPERVETILAHLASRGVLDKLTVLGQANAVEYGVMAGVHNRHYLRRLRRWENRGAAAVEGSQQDRDQLLTKLQDEAEQFDSVYLNASSVTCARRATGGLLLLVDRVVGTVGSTRSPEGLCPASTLSDSARPHAFNKVSDSTIHERSTDVSHSPPRLRNGLALIRPPGHHAESHSARGFCLVNSVAVAAKH---AREHLGLSKVLICDWDVHHGQGTQEMFWKDPSVLYFSVHRHDHGRFWP--GSGSPERVGEGEGEGYTINVAWNQGGMGDAEYRQVWKKILLPVARAFAPELILVSAGFDGAQGDPMGGCEITPRAGFGTMARMLVEGVPSAEGRVVLALEGGYRLSILGECVEACLEAL 503
            +S   + GL YD     H  PD   HPE P R++ I A L   G+  +  VLG   A E   +  VH + ++  ++R           S + +D    K+   A + DS+YLN  S   A  A G ++ + ++V          EG                                     L  G A++RPPGHHAE+  A G+CL N+VAVAA +    R  LG+ ++LI DWDVHHG GTQ+MFWKDP VL FSVHRHD G F+P    G  ++VGEG GEG+ INV W QG  GDA+Y  VW  IL+PV + F P+LILVSAGFD A GDP+GGC +TP  G+  M + L+E    A+G++V+ALEGGYRL I+ E    C++ L
Sbjct:    4 ESRKRKVGLLYDERMCKHDTPDGEDHPECPNRIKAIWAKLQLTGLAQRCVVLGGIKA-EDKHLQLVHTKEHVNLVKRL----------STKKKDSRRNKI---ASKLDSIYLNGGSSEAAYLAAGSVVEVAEKVA---------EG------------------------------------ELDCGFAIVRPPGHHAEADEAMGYCLFNNVAVAASYLVNQRPDLGIKRILIVDWDVHHGNGTQKMFWKDPRVLVFSVHRHDGGSFYPRGDDGDYDKVGEGAGEGFNINVPWEQGRCGDADYFAVWDHILIPVTKEFNPDLILVSAGFDAAIGDPLGGCLVTP-GGYSVMLQKLME---FAQGKIVMALEGGYRLDIVAESSVMCVQVL 330          
BLAST of EWM29907.1 vs. NCBI_GenBank
Match: gi|727625864|ref|XP_010483771.1| (PREDICTED: histone deacetylase 5 [Camelina sativa])

HSP 1 Score: 268.085 bits (684), Expect = 1.491e-78
Identity = 156/389 (40.10%), Postives = 209/389 (53.73%), Query Frame = 0
Query:  126 TGLYYDAIHRLHYHPD-RKHPERPERVETILAHLASRGVLDKLTVLGQANAVEYGVMAGVHNRHYLRRLRRWENRGAAAVEGSQQDRDQLLTKLQDEAEQFDSVYLNASSVTCARRATGGLLLLVDRVVGTVGSTRSPEGLCPASTLSDSARPHAFNKVSDSTIHERSTDVSHSPPRLRNGLALIRPPGHHAESHSARGFCLVNSVAVAAKH---AREHLGLSKVLICDWDVHHGQGTQEMFWKDPSVLYFSVHRHDHGRFWPG--SGSPERVGEGEGEGYTINVAWNQGGMGDAEYRQVWKKILLPVARAFAPELILVSAGFDGAQGDPMGGCEITPRAGFGTMARMLVEGVPSAEGRVVLALEGGYRLSILGECVEACLEALTGPSE 508
             GL YD     H  PD   HPE P+R+  I   L   GV  +  VLG + A E   +  VH + ++  ++            S + +D    K+   A Q +S+YLN SS   A  A G ++ L ++V                                             +   L +G A++RPPGHHAE+  A GFCL N+VAVAA +    R  LG++K+LI DWDVHHG GTQ+MFWKDP VL+FSVHRH++G F+P    G  + VGEG GEG+ INV W+QG  GDA+Y   W  IL+PVAR F P++IL+SAGFD A GDP+GGC +TP  G+  M + L+E    A G++V+ALEGGY L  + +   AC+E L    E
Sbjct:   20 VGLIYDETMCKHDTPDGEDHPECPDRIRVIWEKLQLAGVSQRCVVLGSSKA-EDKHLQLVHTKDHVNLVKTL----------STKQKDYRRNKI---ASQLNSIYLNGSSSEAAYLAAGSVVKLAEKV---------------------------------------------AQGELDSGFAIVRPPGHHAETDEAMGFCLFNNVAVAASYLLNERPDLGVNKILIVDWDVHHGNGTQKMFWKDPRVLFFSVHRHEYGSFYPAGDDGDYDMVGEGLGEGFNINVPWDQGRCGDADYLAAWDHILIPVAREFNPDIILLSAGFDAAIGDPLGGCRVTPY-GYSVMLKKLME---FAHGKIVMALEGGYNLDSIAKSSLACVEVLLEDKE 345          
BLAST of EWM29907.1 vs. NCBI_GenBank
Match: gi|727425782|ref|XP_010456940.1| (PREDICTED: histone deacetylase 5 [Camelina sativa])

HSP 1 Score: 266.544 bits (680), Expect = 8.321e-78
Identity = 158/399 (39.60%), Postives = 212/399 (53.13%), Query Frame = 0
Query:  116 GAPVKSSNLETGLYYDAIHRLHYHPD-RKHPERPERVETILAHLASRGVLDKLTVLGQANAVEYGVMAGVHNRHYLRRLRRWENRGAAAVEGSQQDRDQLLTKLQDEAEQFDSVYLNASSVTCARRATGGLLLLVDRVVGTVGSTRSPEGLCPASTLSDSARPHAFNKVSDSTIHERSTDVSHSPPRLRNGLALIRPPGHHAESHSARGFCLVNSVAVAAKH---AREHLGLSKVLICDWDVHHGQGTQEMFWKDPSVLYFSVHRHDHGRFWPG--SGSPERVGEGEGEGYTINVAWNQGGMGDAEYRQVWKKILLPVARAFAPELILVSAGFDGAQGDPMGGCEITPRAGFGTMARMLVEGVPSAEGRVVLALEGGYRLSILGECVEACLEALTGPSE 508
            G  V     + GL YD     H  PD   HPE P+R+  I   L   GV  +  VLG   A E   +  VH + ++  ++            S + +D    K+   A Q +S+YLN SS   A  A G ++ + ++V          EG                                     L +G A++RPPGHHAE+  A GFCL N+VAVAA +    R  LG+ K+LI DWDVHHG GTQ+MFWKDP VL+FSVHRH++G F+P    G  + VGEG GEG+ INV W+QG  GDA+Y   W  IL+PVAR F P++IL+SAGFD A GDP+GGC +TP  G+  M + L+E    A G++V+ALEGGY L+ + +   AC++ L    E
Sbjct:   17 GKVVGKVERKVGLIYDETMCKHDTPDGEDHPECPDRIRVIWEMLQLAGVSQRCVVLGSIKA-EDKHLQLVHTKDHVNLVKTL----------STKQKDYRRNKI---ASQLNSIYLNGSSSEAAYLAAGSVVKVAEKVA---------EG------------------------------------ELDSGFAIVRPPGHHAETDEAMGFCLFNNVAVAASYLLNERPDLGVKKILIVDWDVHHGNGTQKMFWKDPRVLFFSVHRHEYGSFYPAGDDGDYDMVGEGPGEGFNINVPWDQGRCGDADYLAAWDHILIPVAREFNPDIILLSAGFDAAIGDPLGGCRVTPY-GYSVMLKKLME---FAHGKIVMALEGGYNLASIAKSSLACVQVLLEDKE 352          
BLAST of EWM29907.1 vs. NCBI_GenBank
Match: gi|1109097460|ref|XP_019086943.1| (PREDICTED: histone deacetylase 18-like [Camelina sativa])

HSP 1 Score: 269.24 bits (687), Expect = 9.027e-78
Identity = 157/390 (40.26%), Postives = 208/390 (53.33%), Query Frame = 0
Query:  122 SNLETGLYYDAIHRLHYHPDRK-HPERPERVETILAHLASRGVLDKLTVLGQANAVEYGVMAGVHNRHYLRRLRRWENRGAAAVEGSQQD--RDQLLTKLQDEAEQFDSVYLNASSVTCARRATGGLLLLVDRVVGTVGSTRSPEGLCPASTLSDSARPHAFNKVSDSTIHERSTDVSHSPPRLRNGLALIRPPGHHAESHSARGFCLVNSVAVAAKH---AREHLGLSKVLICDWDVHHGQGTQEMFWKDPSVLYFSVHRHDHGRFWPG--SGSPERVGEGEGEGYTINVAWNQGGMGDAEYRQVWKKILLPVARAFAPELILVSAGFDGAQGDPMGGCEITPRAGFGTMARMLVEGVPSAEGRVVLALEGGYRLSILGECVEACLEAL 503
            S  + GL YD     H  PD + H E P+R+  I   L   GV  +  VLG   A E   +  VH + ++  ++         +   Q+D  RD++       A Q DS+YL+  S   A  A G ++ + ++V                                             +   L +G A++RPPGHHAE+  ARGFCL N+VAVAA +    R  LG+ K+LI DWD+HHG GTQ+MFWKDP VL FSVHRHDHG F+P    G    VGEG GEG+ +NV W QGG GDA+Y   W  IL+PVA+ F PE ILVSAGFD A GDP+GGC +TP  G+  M + L+E    A+G++VLALEGGY L  + +   AC++ L
Sbjct:   21 SQRKVGLVYDETMCKHDTPDGEVHVECPDRIRVIWEKLQLSGVTQRCMVLGGTKA-EDKHLKLVHTKKHVNLVKN--------ISTKQKDSRRDKI-------ASQLDSIYLSKGSSEAAYLAVGSVVEVAEKV---------------------------------------------AKGELDSGFAIVRPPGHHAEADEARGFCLFNNVAVAASYLLNQRPDLGIKKILIVDWDIHHGNGTQKMFWKDPRVLVFSVHRHDHGSFYPSGDDGDYNMVGEGPGEGFNVNVPWEQGGCGDADYLAAWDHILIPVAKEFNPEFILVSAGFDAAIGDPLGGCCVTP-YGYSVMLKKLME---FAQGKIVLALEGGYNLESMAKSSLACVQVL 345          
BLAST of EWM29907.1 vs. NCBI_GenBank
Match: gi|1109041355|ref|XP_019088564.1| (PREDICTED: histone deacetylase 5-like [Camelina sativa])

HSP 1 Score: 265.388 bits (677), Expect = 1.823e-77
Identity = 153/390 (39.23%), Postives = 210/390 (53.85%), Query Frame = 0
Query:  125 ETGLYYDAIHRLHYHPD-RKHPERPERVETILAHLASRGVLDKLTVLGQANAVEYGVMAGVHNRHYLRRLRRWENRGAAAVEGSQQDRDQLLTKLQDEAEQFDSVYLNASSVTCARRATGGLLLLVDRVVGTVGSTRSPEGLCPASTLSDSARPHAFNKVSDSTIHERSTDVSHSPPRLRNGLALIRPPGHHAESHSARGFCLVNSVAVAAKH---AREHLGLSKVLICDWDVHHGQGTQEMFWKDPSVLYFSVHRHDHGRFWPG--SGSPERVGEGEGEGYTINVAWNQGGMGDAEYRQVWKKILLPVARAFAPELILVSAGFDGAQGDPMGGCEITPRAGFGTMARMLVEGVPSAEGRVVLALEGGYRLSILGECVEACLEALTGPSE 508
            + GL YD     H  PD   HPE P+R+  I   L   GV  +  VLG + A E   +  VH + ++  ++            S + +D    K+   A Q +S+YLN +S   A  A G ++ + ++V                                             +   L +G A++RPPGHHAE+  A GFCL N+VAVAA +    R  LG++K+LI DWDVHHG GTQ+MFWKDP VL+FSVHRH++G F+P    G  + VGEG GEG+ INV W+QG  GDA+Y   W  IL+PVAR F P++IL+SAGFD A GDP+GGC +TP  G+  M + L+E    A G++V+ALEGGY L  + +   AC++ L    E
Sbjct:   22 KVGLIYDETMCKHDTPDGEDHPECPDRIRVIWEMLQLAGVSQRCVVLGSSKA-EDKHLQLVHTKDHVNLVKTL----------STKQKDYRRNKI---ASQLNSIYLNGASSEAAYLAAGSVVKVAEKV---------------------------------------------AQGELDSGFAIVRPPGHHAETDEAMGFCLFNNVAVAASYLLNERPDLGVNKILIVDWDVHHGNGTQKMFWKDPRVLFFSVHRHEYGSFYPAGDDGDYDMVGEGLGEGFNINVPWDQGRCGDADYLAAWDHILIPVAREFNPDIILLSAGFDAAIGDPLGGCRVTPY-GYSVMLKKLME---FAHGKIVMALEGGYNLDSIAKSSLACVQVLLEDKE 348          
BLAST of EWM29907.1 vs. NCBI_GenBank
Match: gi|565437969|ref|XP_006282097.1| (hypothetical protein CARUB_v10028344mg, partial [Capsella rubella] >gi|482550801|gb|EOA14995.1| hypothetical protein CARUB_v10028344mg, partial [Capsella rubella])

HSP 1 Score: 265.003 bits (676), Expect = 1.877e-77
Identity = 158/394 (40.10%), Postives = 207/394 (52.54%), Query Frame = 0
Query:  116 GAPVKSSNLETGLYYDAIHRLHYHPDRK-HPERPERVETILAHLASRGVLDKLTVLGQANAVEYGVMAGVHNRHYLRRLRRWENRGAAAVEGSQQDRDQLLTKLQDEAEQFDSVYLNASSVTCARRATGGLLLLVDRVVGTVGSTRSPEGLCPASTLSDSARPHAFNKVSDSTIHERSTDVSHSPPRLRNGLALIRPPGHHAESHSARGFCLVNSVAVAAKH---AREHLGLSKVLICDWDVHHGQGTQEMFWKDPSVLYFSVHRHDHGRFWPG--SGSPERVGEGEGEGYTINVAWNQGGMGDAEYRQVWKKILLPVARAFAPELILVSAGFDGAQGDPMGGCEITPRAGFGTMARMLVEGVPSAEGRVVLALEGGYRLSILGECVEACLEAL 503
            G     S  + GL YD     H  PD + H E P+R+  I   L   GV  +  VLG + A E   +  VH + ++  ++R        +   Q+D  +  T     A QFDS+YLN  S   A  A G +L +V++V                                             +   L  G A++RPPGHHAE+  A GFCL N+VAVAA +    R  LG  K+LI DWD+HHG GTQ+MFWKDP VL FSVHRHDHG F+P    G    VGEG GEG+ INV W QGG GDA+Y   W  IL+PV + + P++IL+SAGFD A GDP+GGC +TP  G+  M + L+E    A+G++VLALEGGY L  +     AC++ L
Sbjct:   32 GKVAGKSQRKVGLIYDETMCKHDTPDGEVHVECPDRIRVIWEKLQLAGVTQRCVVLGGSKA-EDKHLQLVHTKKHVNLVKR--------ITTKQKDHRRNRT-----ASQFDSIYLNGGSSEAAYLAAGSVLKVVEKV---------------------------------------------AQGELDCGFAIVRPPGHHAEAGEAMGFCLFNNVAVAASYLLNQRPDLGFKKILIVDWDIHHGNGTQKMFWKDPRVLVFSVHRHDHGSFYPSGDDGDYNMVGEGPGEGFNINVPWEQGGCGDADYLVAWDHILIPVLKEYNPDIILLSAGFDAAIGDPLGGCCVTP-YGYSVMLKKLME---FAQGKIVLALEGGYNLESMAMSSLACVQVL 362          
BLAST of EWM29907.1 vs. NCBI_GenBank
Match: gi|629075575|gb|KCW44438.1| (hypothetical protein EUGRSUZ_L020602, partial [Eucalyptus grandis] >gi|629075576|gb|KCW44439.1| hypothetical protein EUGRSUZ_L020602, partial [Eucalyptus grandis])

HSP 1 Score: 255.758 bits (652), Expect = 2.923e-77
Identity = 148/398 (37.19%), Postives = 207/398 (52.01%), Query Frame = 0
Query:  112 SVTSGAPVKS-SNLETGLYYDAIHRLHYHPDRK-HPERPERVETILAHLASRGVLDKLTVLGQANAVEYGVMAGVHNRHYLRRLRRWENRGAAAVEGSQQDRDQLLTKLQDEAEQFDSVYLNASSVTCARRATGGLLLLVDRVVGTVGSTRSPEGLCPASTLSDSARPHAFNKVSDSTIHERSTDVSHSPPRLRNGLALIRPPGHHAESHSARGFCLVNSVAVAAKHA--REHLGLSKVLICDWDVHHGQGTQEMFWKDPSVLYFSVHRHDHGRFWPGS--GSPERVGEGEGEGYTINVAWNQGGMGDAEYRQVWKKILLPVARAFAPELILVSAGFDGAQGDPMGGCEITPRAGFGTMARMLVEGVPSAEGRVVLALEGGYRLSILGECVEACLEAL 503
            +V SG+   S S    G+ YD     H+ PD + HPE P R+  I   L + G+  +  VL    A +  +++ VH + ++  +R   ++             Q  ++    A +F+S+YLN  S   A  A G ++ +  RV                                             +   L +  A++RPPGHHAE   A GFCL N+VA+A       + LG++K+LI DWDVHHG GTQ+ FWKDP VL+FSVHRH+ G F+P S  G    +GEG G GY INV W  G  GDA+Y  VW  IL+PVA+ F P++IL+SAGFD A GDP+GGC +TP  G+  M + L++    A G++VLALEGGY L+ +     AC+E L
Sbjct:    3 AVESGSDGASRSQRRVGILYDERMCRHHTPDDEPHPENPNRIRAIWNKLQAAGITQRCEVLNAKEAEDKYILS-VHGKSHVDLIRNISSK-------------QFNSRRNRIASKFNSIYLNEGSSEAAYLAAGSVIEVAKRV---------------------------------------------AKGELDSAFAIVRPPGHHAEHDEAMGFCLYNNVAIATNFLLNEKELGINKILIVDWDVHHGNGTQKTFWKDPRVLFFSVHRHEFGSFYPASDDGDYTMIGEGPGAGYNINVPWENGRCGDADYLAVWDHILIPVAKQFNPDMILISAGFDAAVGDPLGGCRVTPY-GYAMMLKKLMD---FARGKIVLALEGGYNLTSISNSALACMEVL 337          
The following BLAST results are available for this feature:
BLAST of EWM29907.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112490|gb|EWM29907.1|0.000e+0100.00histone deacetylase 6 [Nannochloropsis gaditana][more]
gi|1045393038|dbj|GAU24631.1|2.125e-7938.02hypothetical protein TSUD_208560, partial [Trifoli... [more]
gi|1079376745|ref|XP_018512120.1|4.596e-7940.51PREDICTED: histone deacetylase 5-like isoform X2 [... [more]
gi|685278401|ref|XP_009130144.1|1.040e-7840.51PREDICTED: histone deacetylase 5-like isoform X1 [... [more]
gi|727625864|ref|XP_010483771.1|1.491e-7840.10PREDICTED: histone deacetylase 5 [Camelina sativa][more]
gi|727425782|ref|XP_010456940.1|8.321e-7839.60PREDICTED: histone deacetylase 5 [Camelina sativa][more]
gi|1109097460|ref|XP_019086943.1|9.027e-7840.26PREDICTED: histone deacetylase 18-like [Camelina s... [more]
gi|1109041355|ref|XP_019088564.1|1.823e-7739.23PREDICTED: histone deacetylase 5-like [Camelina sa... [more]
gi|565437969|ref|XP_006282097.1|1.877e-7740.10hypothetical protein CARUB_v10028344mg, partial [C... [more]
gi|629075575|gb|KCW44438.1|2.923e-7737.19hypothetical protein EUGRSUZ_L020602, partial [Euc... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna762rna762Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications