rna7616, rna7616 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7616
Unique Name	rna7616
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1578
Alignment location	CM002472.1:383284..384178 -

Link to JBrowse

Properties


Property Name	Value
Product	Heavy metal-associated domain, HMA
Orig transcript id	gnl\|cribi\|Naga_101118g2.5745.mrna
Orig protein id	gnl\|cribi\|Naga_101118g2.5745
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002472.1	supercontig	CM002472.1:383284..384178 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101118g2	gene7374	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7616	rna7616-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23077.1	cds7596	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002472.1:383284..384178-
coding sequence from alignment at CM002472.1:383284..384178-

mRNA sequence

>rna7616 ID=rna7616|Name=rna7616|organism=Nannochloropsis gaditana|type=mRNA|length=1578bp
CTCCTCCTCCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTGCATT
GTGCTCCCTGCTGGCTGGCCTTGCATGCAAAGTCTGACCAGGGGCCAGAC
CACGTCGTCCCTTCTTTTCCTAACCTCCGCCCTCCCTCCCTCCCTACCTC
CCTCCCTCCCTCAAGGTGCCTAGCCAAGCTCGTCTGTCTCAAGCAGGAAG
ACAACAAGGTGGTAGGCTTTCACTTCGTCGGGCCCAATGCCGGGGAGATC
ACGCAGGGATTCCACCTGGCCATGAAGCTTGGAGCCAAGAAAGCTGACTT
TGACGACATGATCGGGATACATCCCACGGACGCCGAGGCCTTCGCCTCCC
TGCACACGACCAAAGCCAGTGGAGAGAGCTGGTTGAACGTCGGTTGTGGT
GGAGGGAAATGTGGCTGAAGCGAGAAAAAAGGGCGGGAGGAGGATGGGGC
TTCTTGCTGGGGATTGGGGGAAGAGATCTTTTTCGTCTCCCACGGCCCGA
TGTGCGCACTCACGAGGGAGGGATCGATGAAAAGAGAGAAAGTGGGCGGG
TACGGTGAAGAGAAAATTGGGAACATAAGATGATTTCACATCGTTTTTGT
CGATCACGTTCCTGCTTGCCAAAGTATGTGGGGTGATTTTGATAATTTTC
TAAAAGGAGGGGTATCGTAGGGGAGAAGGAAGGAAGAGGGGGGAGGTTAA
AAAAGAAGACGGAGACAAAAGGATGAGGACGGGTTTTTGAGGAAAAGGCA
GCAAGGGTTCGGGGTCAAGAGGTGAAACACAGCATTCGTGTGCGTGACAA
CTAGTGAAAGCAACGATCGACTGGACGCGAGCAAATGACGGGATGTGCCA
GTGCCTCCCTCCATCCTCAGACTGCGATATTGGGTCATGTCACGCTGGGC
TTATTTATGTCAAACAAAAAGTTCCTTCTACGAATGCGACCCTGCCATCG
ACCCAACCGCGTGCAATGAGCCTGCAGGCGCGTTATGTCTACGCAAGGCA
ATGGAGGCACGCTTCCACTGCCTTTACTGTCCATTCCCAGGAATGATTCA
TGCGATAAAAGGATTTGCTCAAATGCGTGGGGCGGGGGGAACGTGTTCTA
TGTGATGCCTACTTGGGACGTGGACAACAGTCTCTCACACCCAAAGCCCA
TTGAACCCCAACCACCAGCGTCCAACTCTCCCATCCATGTCTTGCATCCC
TTGTGGCTCCGCGGCGGCTGCCGCCAAAGCTGTTGTGGCCGTCTCCGACA
CCACCATGCCGTCCAAAGCCGAAGTCCAGGCCCGAGGCCTTCTCATCGAC
CTGTACCGCGCCAAGCCCTGCATGCCGATCATGGTCCGTCTTGCCTGGCA
CGATGCGGGCACCTTTTGCGCCAAGGACAATACGGGCGGGGCGAATGCCT
CCATCCGGTTCGAGCCTGAGATTTCCCACGGGGCCAACGCGGGATTGACT
GCGGCGACCCAGCTCATGCAGGTACGTGAGTGCTGTTGGCATGGAATGTA
TGGTATTTGGGACAAATAAAGTCAAGAGAAGTGCCTGGTTGAGGAACGTT
TGGGCGCTTGCACAGCTGGGAGTCCTCT

protein sequence of rna7616

>rna7616-protein ID=rna7616-protein|Name=rna7616|organism=Nannochloropsis gaditana|type=polypeptide|length=199bp
MSAPKTTTFHVGMTCDGCANAVKRILGKMEGMFSSMLRAACVVWFLLSVP
LYRLALFSFSASAPQYKAFRLQDNESDGHRHQRPRKEGGRPNGGPRPGDG
AAHRAGKMGGSRREGGENAGVTRRARRTDGGEKGRKAKRFVQVVREDRRE
GGKEEGLKWVNRPRRVPSTVTVTVTVTGPFPGLHVTGNKKKTEKYHSHF

mRNA from alignment at CM002472.1:383284..384178-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7616 ID=rna7616|Name=rna7616|organism=Nannochloropsis gaditana|type=mRNA|length=895bp|location=Sequence derived from alignment at CM002472.1:383284..384178- (Nannochloropsis gaditana)
ATGAGTGCCCCAAAGACGACGACTTTCCATGTGGGTATGACCTGCGACGG
TAAGACAGGGGGGAAGGCTGCGTTTCTTCCTTTTCCAGGCATTTCGCCAC
TCGAACACCGCAATTTACCTGGCCCTGAGCCCCTAACATTGAACGAACGT
CATTTGTTTCCTACTGTCCAGGTTGCGCCAATGCCGTGAAGCGAATTCTT
GGAAAGATGGAGGGTATGTTCTCCTCGATGCTTCGAGCTGCATGTGTCGT
CTGGTTCCTGCTTTCTGTTCCTCTTTACCGATTGGCGCTTTTTTCTTTCT
CCGCCTCGGCCCCTCAATACAAAGCGTTTCGGTTGCAGGACAATGAGTCG
AAGGTCTTGAGCTTACTTCCTTCCCGATATGCATACAACTCGAGTCACTC
CTTCTCCTCCCTCTCTCCCTCCCTCCTTCCATCTCTCCCCTCCTCTTCCT
CAAAGGAGTGACGGCCATCGACACCAACGTCCCCGAAAAGAAGGTGGTCG
TCCAAACGGAGGACCACGTCCAGGGGACGGAGCTGCTCACCGCGCTGGCA
AAATGGGGGGAAGCCGCCGGGAAGGAGGTGAAAATGCTGGCGTGACGCGA
AGAGCCAGGAGAACCGACGGGGGAGAGAAGGGAAGGAAAGCAAAGAGATT
TGTACAAGTAGTACGCGAGGACCGGTGAGGACGGCATTGGATCATGGGAC
TATGCTCAGGAGGCGCGAGGGGAGTCCGTTGGGTGAAGGAGGGAGGGGGG
GAAGGAAGAGGGTTTAAAGTGGGTCAATCGACCTCGACGGGTACCTAGCA
CCGTGACCGTTACCGTGACCGTTACAGGGCCCTTCCCGGGTCTGCACGTC
ACTGGCAACAAGAAGAAGACGGAGAAATATCACTCACACTTCTGA

Coding sequence (CDS) from alignment at CM002472.1:383284..384178-

>rna7616 ID=rna7616|Name=rna7616|organism=Nannochloropsis gaditana|type=CDS|length=2400bp|location=Sequence derived from alignment at CM002472.1:383284..384178- (Nannochloropsis gaditana)
GAGGGAGGGGGGGAAGGAAGAGGGTTTAAAGTGGGTCAATCGACCTCGAC
GGGTACCTAGCACCGTGACCGTTACCGTGACCGTTACAGGGCCCTTCCCG
GGTCTGCACGTCACTGGCAACAAGAAGAAGACGGAGAAATATCACTCACA
CTTCTGAGAGTGACGGCCATCGACACCAACGTCCCCGAAAAGAAGGTGGT
CGTCCAAACGGAGGACCACGTCCAGGGGACGGAGCTGCTCACCGCGCTGG
CAAAATGGGGGGAAGCCGCCGGGAAGGAGGTGAAAATGCTGGCGTGACGC
GAAGAGCCAGGAGAACCGACGGGGGAGAGAAGGGAAGGAAAGCAAAGAGA
TTTGTACAAGTAGTACGCGAGGACCGGTTGCGCCAATGCCGTGAAGCGAA
TTCTTGGAAAGATGGAGGGTATGTTCTCCTCGATGCTTCGAGCTGCATGT
GTCGTCTGGTTCCTGCTTTCTGTTCCTCTTTACCGATTGGCGCTTTTTTC
TTTCTCCGCCTCGGCCCCTCAATACAAAGCGTTTCGGTTGCAGGACAATG
AATGAGTGCCCCAAAGACGACGACTTTCCATGTGGGTATGACCTGCGACG
GAGGGAGGGGGGGAAGGAAGAGGGTTTAAAGTGGGTCAATCGACCTCGAC
GGGTACCTAGCACCGTGACCGTTACCGTGACCGTTACAGGGCCCTTCCCG
GGTCTGCACGTCACTGGCAACAAGAAGAAGACGGAGAAATATCACTCACA
CTTCTGAGAGTGACGGCCATCGACACCAACGTCCCCGAAAAGAAGGTGGT
CGTCCAAACGGAGGACCACGTCCAGGGGACGGAGCTGCTCACCGCGCTGG
CAAAATGGGGGGAAGCCGCCGGGAAGGAGGTGAAAATGCTGGCGTGACGC
GAAGAGCCAGGAGAACCGACGGGGGAGAGAAGGGAAGGAAAGCAAAGAGA
TTTGTACAAGTAGTACGCGAGGACCGGTTGCGCCAATGCCGTGAAGCGAA
TTCTTGGAAAGATGGAGGGTATGTTCTCCTCGATGCTTCGAGCTGCATGT
GTCGTCTGGTTCCTGCTTTCTGTTCCTCTTTACCGATTGGCGCTTTTTTC
TTTCTCCGCCTCGGCCCCTCAATACAAAGCGTTTCGGTTGCAGGACAATG
AATGAGTGCCCCAAAGACGACGACTTTCCATGTGGGTATGACCTGCGACG
GAGGGAGGGGGGGAAGGAAGAGGGTTTAAAGTGGGTCAATCGACCTCGAC
GGGTACCTAGCACCGTGACCGTTACCGTGACCGTTACAGGGCCCTTCCCG
GGTCTGCACGTCACTGGCAACAAGAAGAAGACGGAGAAATATCACTCACA
CTTCTGAGAGTGACGGCCATCGACACCAACGTCCCCGAAAAGAAGGTGGT
CGTCCAAACGGAGGACCACGTCCAGGGGACGGAGCTGCTCACCGCGCTGG
CAAAATGGGGGGAAGCCGCCGGGAAGGAGGTGAAAATGCTGGCGTGACGC
GAAGAGCCAGGAGAACCGACGGGGGAGAGAAGGGAAGGAAAGCAAAGAGA
TTTGTACAAGTAGTACGCGAGGACCGGTTGCGCCAATGCCGTGAAGCGAA
TTCTTGGAAAGATGGAGGGTATGTTCTCCTCGATGCTTCGAGCTGCATGT
GTCGTCTGGTTCCTGCTTTCTGTTCCTCTTTACCGATTGGCGCTTTTTTC
TTTCTCCGCCTCGGCCCCTCAATACAAAGCGTTTCGGTTGCAGGACAATG
AATGAGTGCCCCAAAGACGACGACTTTCCATGTGGGTATGACCTGCGACG
GAGGGAGGGGGGGAAGGAAGAGGGTTTAAAGTGGGTCAATCGACCTCGAC
GGGTACCTAGCACCGTGACCGTTACCGTGACCGTTACAGGGCCCTTCCCG
GGTCTGCACGTCACTGGCAACAAGAAGAAGACGGAGAAATATCACTCACA
CTTCTGAGAGTGACGGCCATCGACACCAACGTCCCCGAAAAGAAGGTGGT
CGTCCAAACGGAGGACCACGTCCAGGGGACGGAGCTGCTCACCGCGCTGG
CAAAATGGGGGGAAGCCGCCGGGAAGGAGGTGAAAATGCTGGCGTGACGC
GAAGAGCCAGGAGAACCGACGGGGGAGAGAAGGGAAGGAAAGCAAAGAGA
TTTGTACAAGTAGTACGCGAGGACCGGTTGCGCCAATGCCGTGAAGCGAA
TTCTTGGAAAGATGGAGGGTATGTTCTCCTCGATGCTTCGAGCTGCATGT
GTCGTCTGGTTCCTGCTTTCTGTTCCTCTTTACCGATTGGCGCTTTTTTC
TTTCTCCGCCTCGGCCCCTCAATACAAAGCGTTTCGGTTGCAGGACAATG
AATGAGTGCCCCAAAGACGACGACTTTCCATGTGGGTATGACCTGCGACG

Synonyms

Publications