EWM23077.1, cds7596 (CDS) Nannochloropsis gaditana

Overview
NameEWM23077.1
Unique Namecds7596
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:384130..384178 -
Alignment locationCM002472.1:383833..384007 -
Alignment locationCM002472.1:383505..383723 -
Alignment locationCM002472.1:383284..383440 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23077.1
ProductHeavy metal-associated domain, HMA
Orig transcript idgnl|cribi|Naga_101118g2.5745.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:384130..384178 -
CM002472.1supercontigCM002472.1:383833..384007 -
CM002472.1supercontigCM002472.1:383505..383723 -
CM002472.1supercontigCM002472.1:383284..383440 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0030001metal ion transport
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0046872metal ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR006121HeavyMe-assoc_HMA
Homology
[Close]
BLAST of EWM23077.1 vs. NCBI_GenBank
Match: gi|585103919|gb|EWM23077.1| (Heavy metal-associated domain, HMA [Nannochloropsis gaditana])

HSP 1 Score: 407.912 bits (1047), Expect = 5.153e-144
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0 
Query:    1 MSAPKTTTFHVGMTCDGCANAVKRILGKMEGMFSSMLRAACVVWFLLSVPLYRLALFSFSASAPQYKAFRLQDNESDGHRHQRPRKEGGRPNGGPRPGDGAAHRAGKMGGSRREGGENAGVTRRARRTDGGEKGRKAKRFVQVVREDRREGGKEEGLKWVNRPRRVPSTVTVTVTVTGPFPGLHVTGNKKKTEKYHSHF 199
            MSAPKTTTFHVGMTCDGCANAVKRILGKMEGMFSSMLRAACVVWFLLSVPLYRLALFSFSASAPQYKAFRLQDNESDGHRHQRPRKEGGRPNGGPRPGDGAAHRAGKMGGSRREGGENAGVTRRARRTDGGEKGRKAKRFVQVVREDRREGGKEEGLKWVNRPRRVPSTVTVTVTVTGPFPGLHVTGNKKKTEKYHSHF
Sbjct:    1 MSAPKTTTFHVGMTCDGCANAVKRILGKMEGMFSSMLRAACVVWFLLSVPLYRLALFSFSASAPQYKAFRLQDNESDGHRHQRPRKEGGRPNGGPRPGDGAAHRAGKMGGSRREGGENAGVTRRARRTDGGEKGRKAKRFVQVVREDRREGGKEEGLKWVNRPRRVPSTVTVTVTVTGPFPGLHVTGNKKKTEKYHSHF 199
[Close]
BLAST of EWM23077.1 vs. NCBI_GenBank
Match: gi|553182230|ref|XP_005853700.1| (copper chaperone [Nannochloropsis gaditana CCMP526] >gi|422295361|gb|EKU22660.1| copper chaperone [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 70.4774 bits (171), Expect = 8.135e-13
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 0 
Query:    1 MSAPKTTTFHVGMTCDGCANAVKRILGKMEGM 32
            MSAPKTTTFHVGMTCDGCANAVKRILGKMEG+
Sbjct:    1 MSAPKTTTFHVGMTCDGCANAVKRILGKMEGV 32
[Close]
BLAST of EWM23077.1 vs. NCBI_GenBank
Match: gi|298708022|emb|CBJ30384.1| (copper chaperone [Ectocarpus siliculosus])

HSP 1 Score: 55.8398 bits (133), Expect = 2.963e-7
Identity = 23/29 (79.31%), Postives = 26/29 (89.66%), Query Frame = 0 
Query:    4 PKTTTFHVGMTCDGCANAVKRILGKMEGM 32
             +TT F+VGMTCDGCANA KRILGKMEG+
Sbjct:    2 SETTVFNVGMTCDGCANATKRILGKMEGV 30
The following BLAST results are available for this feature:
BLAST of EWM23077.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585103919|gb|EWM23077.1|5.153e-144100.00Heavy metal-associated domain, HMA [Nannochloropsi... [more]
gi|553182230|ref|XP_005853700.1|8.135e-1396.88copper chaperone [Nannochloropsis gaditana CCMP526... [more]
gi|298708022|emb|CBJ30384.1|2.963e-779.31copper chaperone [Ectocarpus siliculosus][more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7616rna7616Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications