rna7614, rna7614 (mRNA) Nannochloropsis gaditana

Overview
Namerna7614
Unique Namerna7614
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length576
Alignment locationCM002472.1:378988..379771 +

Link to JBrowse

Properties
Property NameValue
Productthioredoxin reductase
Orig transcript idgnl|cribi|Naga_101610g2.8356.mrna
Orig protein idgnl|cribi|Naga_101610g2.8356
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:378988..379771 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101610g2gene7372Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7614rna7614-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23080.1cds7594Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7614 ID=rna7614|Name=rna7614|organism=Nannochloropsis gaditana|type=mRNA|length=576bp
GTCCTCTGCCCCTTGGCCCCCCGCCCCACCTCGCCCTCCTTCCCTCCTTC
CCCCCCTCCCTCCTTCTCTCCTTCCACCCCTTCCCCCCTCCCTCCTTCCC
CCCCTCCCTTGGCAGGTCAAACGGTGCATGGAGCACCCAGGCGATGGGTA
CGGCCTAGGAGAGCTCTTGGTCAAGCTCGAAGTGGACGCCAAAATCGCCA
AGAGCTGGTACGAAGCCAAGTAAGAAAAAAATGCGACGGCGGGGAAGGAG
GGGAGGAGGGAGGGCAGGGAGAGGAGGGAGGAAAAGAGGGCGTGGGGGAC
GAGTATTTTCGGGTTTGTACAGCATTGCGGAGGGGAACAAAAAGGCTGCT
GGGTGTTGGGAAGGGTGGAGGGAGGGATAGAACGGAGGATCAAACCCTGG
CTGCAGCGTTCATACCGGGGGAACGAGCCGCAGCTGAAGACTGATCTCGG
AACATGGAAACTTAAACAAGGAAGGGCGGGGAATAGGCCCTACGATACGG
AAAAAGCGCACGAGCAGTGGAGATTGACAGAGAATGAAAGAATTAATGTG
TTGACCGCACCATGTTAAACACCCGG
back to top

protein sequence of rna7614

>rna7614-protein ID=rna7614-protein|Name=rna7614|organism=Nannochloropsis gaditana|type=polypeptide|length=165bp
MATVSLRGTEPRSNGGSHANPNYTYDLIVIGGGSGGLAAAKEAAKHGAKV
ALFDYVKPSTQGSKWGLGGTCVNVGCVPKKICHYSGLLGHAIKDAQALGW
TFGDPKPAHDWEGLSSPVRDHRGMLNFLYRRGLQSAHVEYINALTAFTGP
HSVTYLPKGKEEGEE
back to top

mRNA from alignment at CM002472.1:378988..379771+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7614 ID=rna7614|Name=rna7614|organism=Nannochloropsis gaditana|type=mRNA|length=784bp|location=Sequence derived from alignment at CM002472.1:378988..379771+ (Nannochloropsis gaditana)
ATGGCGACGGTCTCCCTCCGCGGGACAGAGCCCCGGTCCAATGGCGGCAG
TCATGCCAATCCCAACTATACCTATGATCTGATCGTCATTGGTGGAGGTA
GTGGAGGTCTGGCCGCCGCCAAAGAAGCGGCCAAGCACGGGGCAAAAGTC
GCCCTCTTTGACTATGTGAAGCCCTCCACTCAGGGTAGTAAGTGGGGACT
GGGGGGTACCTGTGTGAATGTGGGCTGCGTCCCTAAGAAAATCTGCCATT
ACTCCGGCCTTTTGGGGCATGCCATCAAGGTgagtgggggggggttgaaa
acgaggggaggaggggcgggaggggaggaaatgaacCAAACTAACTAAGG
CGAGGGCTTACATTCGCAAATCGGGtgccggcggggaggatgaagatcCG
GAGAGCACTCTtcacgccttcccctccctccttccctccctccttccctc
cctccctccctctttccttccccccaggaCGCCCAAGCCCTAGGCTGGAC
GTTTGGTGACCCCAAACCGGCTCATGATTGGGAAGGCTTATCGTCGCCCG
TGCGGGATCACCGCGGTATGTTGAATTTCCTCTACCGGCGGGGGCTTCAG
AGCGCCCACGTGGAGTACATCAACGCCCTGACGGCCTTCACGGGCCCGCA
CTCGGTCACTTACCTGcccaaggggaaggaggaaggggaggaggtagagg
tgTCAGCAGCCCATATTGTGATTGCGGTGGGGGGGCGCCCGGTGGTACCG
AGGGAGGTGCCGGGGGCGGTCGAGTATGCAGTAA
back to top

Coding sequence (CDS) from alignment at CM002472.1:378988..379771+

>rna7614 ID=rna7614|Name=rna7614|organism=Nannochloropsis gaditana|type=CDS|length=1494bp|location=Sequence derived from alignment at CM002472.1:378988..379771+ (Nannochloropsis gaditana)
ATGGCGACGGTCTCCCTCCGCGGGACAGAGCCCCGGTCCAATGGCGGCAG
TCATGCCAATCCCAACTATACCTATGATCTGATCGTCATTGGTGGAGGTA
GTGGAGGTCTGGCCGCCGCCAAAGAAGCGGCCAAGCACGGGGCAAAAGTC
GCCCTCTTTGACTATGTGAAGCCCTCCACTCAGGGTAGTAAGTGGGGACT
GGGGGGTACCTGTGTGAATGTGGGCTGCGTCCCTAAGAAAATCTGCCATT
ACTCCGGCCTTTTGGGGCATGCCATCAAGgaCGCCCAAGCCCTAGGCTGG
ACGTTTGGTGACCCCAAACCGGCTCATGATTGGGAAGGCTTATCGTCGCC
CGTGCGGGATCACCGCGGTATGTTGAATTTCCTCTACCGGCGGGGGCTTC
AGAGCGCCCACGTGGAGTACATCAACGCCCTGACGGCCTTCACGGGCCCG
CACTCGGTCACTTACCTGcccaaggggaaggaggaaggggaggagTAAAT
GGCGACGGTCTCCCTCCGCGGGACAGAGCCCCGGTCCAATGGCGGCAGTC
ATGCCAATCCCAACTATACCTATGATCTGATCGTCATTGGTGGAGGTAGT
GGAGGTCTGGCCGCCGCCAAAGAAGCGGCCAAGCACGGGGCAAAAGTCGC
CCTCTTTGACTATGTGAAGCCCTCCACTCAGGGTAGTAAGTGGGGACTGG
GGGGTACCTGTGTGAATGTGGGCTGCGTCCCTAAGAAAATCTGCCATTAC
TCCGGCCTTTTGGGGCATGCCATCAAGgaCGCCCAAGCCCTAGGCTGGAC
GTTTGGTGACCCCAAACCGGCTCATGATTGGGAAGGCTTATCGTCGCCCG
TGCGGGATCACCGCGGTATGTTGAATTTCCTCTACCGGCGGGGGCTTCAG
AGCGCCCACGTGGAGTACATCAACGCCCTGACGGCCTTCACGGGCCCGCA
CTCGGTCACTTACCTGcccaaggggaaggaggaaggggaggagTAAATGG
CGACGGTCTCCCTCCGCGGGACAGAGCCCCGGTCCAATGGCGGCAGTCAT
GCCAATCCCAACTATACCTATGATCTGATCGTCATTGGTGGAGGTAGTGG
AGGTCTGGCCGCCGCCAAAGAAGCGGCCAAGCACGGGGCAAAAGTCGCCC
TCTTTGACTATGTGAAGCCCTCCACTCAGGGTAGTAAGTGGGGACTGGGG
GGTACCTGTGTGAATGTGGGCTGCGTCCCTAAGAAAATCTGCCATTACTC
CGGCCTTTTGGGGCATGCCATCAAGgaCGCCCAAGCCCTAGGCTGGACGT
TTGGTGACCCCAAACCGGCTCATGATTGGGAAGGCTTATCGTCGCCCGTG
CGGGATCACCGCGGTATGTTGAATTTCCTCTACCGGCGGGGGCTTCAGAG
CGCCCACGTGGAGTACATCAACGCCCTGACGGCCTTCACGGGCCCGCACT
CGGTCACTTACCTGcccaaggggaaggaggaaggggaggagTAA
back to top
Synonyms
Publications