EWM23080.1, cds7594 (CDS) Nannochloropsis gaditana

Overview
NameEWM23080.1
Unique Namecds7594
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002472.1:378988..379266 +
Alignment locationCM002472.1:379465..379680 +
Alignment locationCM002472.1:379769..379771 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23080.1
Productthioredoxin reductase
Orig transcript idgnl|cribi|Naga_101610g2.8356.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:378988..379266 +
CM002472.1supercontigCM002472.1:379465..379680 +
CM002472.1supercontigCM002472.1:379769..379771 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0008152metabolic process
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0000166nucleotide binding
GO:0016668oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor
GO:0004791thioredoxin-disulfide reductase activity
GO:0016491oxidoreductase activity
Vocabulary: INTERPRO
TermDefinition
IPR012999Pyr_OxRdtase_I_AS
IPR006338Thioredoxin/glutathione_Rdtase
IPR023753Pyr_nucl-diS_OxRdtase_FAD/NAD
Homology
BLAST of EWM23080.1 vs. NCBI_GenBank
Match: gi|585103924|gb|EWM23080.1| (thioredoxin reductase [Nannochloropsis gaditana])

HSP 1 Score: 341.658 bits (875), Expect = 5.796e-119
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0
Query:    1 MATVSLRGTEPRSNGGSHANPNYTYDLIVIGGGSGGLAAAKEAAKHGAKVALFDYVKPSTQGSKWGLGGTCVNVGCVPKKICHYSGLLGHAIKDAQALGWTFGDPKPAHDWEGLSSPVRDHRGMLNFLYRRGLQSAHVEYINALTAFTGPHSVTYLPKGKEEGEE 165
            MATVSLRGTEPRSNGGSHANPNYTYDLIVIGGGSGGLAAAKEAAKHGAKVALFDYVKPSTQGSKWGLGGTCVNVGCVPKKICHYSGLLGHAIKDAQALGWTFGDPKPAHDWEGLSSPVRDHRGMLNFLYRRGLQSAHVEYINALTAFTGPHSVTYLPKGKEEGEE
Sbjct:    1 MATVSLRGTEPRSNGGSHANPNYTYDLIVIGGGSGGLAAAKEAAKHGAKVALFDYVKPSTQGSKWGLGGTCVNVGCVPKKICHYSGLLGHAIKDAQALGWTFGDPKPAHDWEGLSSPVRDHRGMLNFLYRRGLQSAHVEYINALTAFTGPHSVTYLPKGKEEGEE 165          
BLAST of EWM23080.1 vs. NCBI_GenBank
Match: gi|298713267|emb|CBJ26963.1| (Electron donor (NADH / NADPH)-dependent reductase [Ectocarpus siliculosus])

HSP 1 Score: 188.734 bits (478), Expect = 2.085e-54
Identity = 88/142 (61.97%), Postives = 107/142 (75.35%), Query Frame = 0
Query:   20 NPNYTYDLIVIGGGSGGLAAAKEAAKHGAKVALFDYVKPSTQGSKWGLGGTCVNVGCVPKKICHYSGLLGHAIKDAQALGWTFGDPKPAHDWEGLSSPVRDHRGMLNFLYRRGLQSAHVEYINALTAFTGPHSVTYLPKGKE 161
            + +Y YDL VIGGGSGG+A AK+AA +G KV LFD+VKPS QG+KWGLGGTCVNVGCVPKK+ HY+GLLG  + DA+A GW  G+P+  HDWE +   V++H  MLNF YR GL+SA V Y+N L   TGPH VT   +GKE
Sbjct:    8 SASYDYDLAVIGGGSGGMAVAKKAASYGKKVVLFDFVKPSPQGTKWGLGGTCVNVGCVPKKLMHYAGLLGAGMHDAKAFGWKVGNPE--HDWEAMVETVQNHVKMLNFRYRVGLKSAQVTYVNGLARLTGPHEVTCEKRGKE 147          
BLAST of EWM23080.1 vs. NCBI_GenBank
Match: gi|873218434|emb|CEM39538.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 178.333 bits (451), Expect = 1.455e-50
Identity = 92/142 (64.79%), Postives = 103/142 (72.54%), Query Frame = 0
Query:   22 NYTYDLIVIGGGSGGLAAAKEAAKHGAKVALFDYVKPSTQGSKWGLGGTCVNVGCVPKKICHYSGLLGHAI-KDAQALGWTFG-DPKPAHDWEGLSSPVRDHRGMLNFLYRRGLQSAHVEYINALTAFTGPHSVTYLPKGKE 161
             Y YDLIVIGGGSGG+A AKE+A  GAKVALFD+VKPSTQG+KWGLGGTCVNVGCVPKK+ HY  LLG  +  DA   GW  G D K  HDW  L   V++H   LNF YR GL+ A+V YINAL  FT PH +TY  KGKE
Sbjct:   10 RYDYDLIVIGGGSGGMACAKESAMQGAKVALFDFVKPSTQGTKWGLGGTCVNVGCVPKKLMHYGALLGGKLHHDAAKYGWQVGKDVK--HDWATLVQTVQNHVKSLNFSYRSGLRVANVTYINALAKFTSPHHITYTLKGKE 149          
BLAST of EWM23080.1 vs. NCBI_GenBank
Match: gi|1084847073|ref|XP_018641987.1| (thioredoxin reductase [Plasmodium gaboni] >gi|1011105396|gb|KYO00220.1| thioredoxin reductase [Plasmodium gaboni])

HSP 1 Score: 174.866 bits (442), Expect = 1.497e-48
Identity = 83/144 (57.64%), Postives = 104/144 (72.22%), Query Frame = 0
Query:   23 YTYDLIVIGGGSGGLAAAKEAAKHGAKVALFDYVKPSTQGSKWGLGGTCVNVGCVPKKICHYSGLLGHAIK-DAQALGWTFGDPKPAHDWEGLSSPVRDHRGMLNFLYRRGLQSAHVEYINALTAFTGPHSVTYLPKGKEEGEE 165
            Y YD +VIGGG GG+A+AKEAA HGA+V LFDYVKPS+QG+KWG+GGTCVNVGCVPKK+ HY+G +G   K D++A GW F + K  HDW+ L + V+ H   LNF Y  GL+S+ V+YINAL      ++VTY  KG    EE
Sbjct:  116 YDYDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGNMGSIFKLDSKAYGWKFDNLK--HDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYINALAKLKDKNTVTYYLKGDLSKEE 257          
BLAST of EWM23080.1 vs. NCBI_GenBank
Match: gi|641581632|emb|CDO64297.1| (thioredoxin reductase [Plasmodium reichenowi])

HSP 1 Score: 174.481 bits (441), Expect = 2.195e-48
Identity = 82/144 (56.94%), Postives = 104/144 (72.22%), Query Frame = 0
Query:   23 YTYDLIVIGGGSGGLAAAKEAAKHGAKVALFDYVKPSTQGSKWGLGGTCVNVGCVPKKICHYSGLLGHAIK-DAQALGWTFGDPKPAHDWEGLSSPVRDHRGMLNFLYRRGLQSAHVEYINALTAFTGPHSVTYLPKGKEEGEE 165
            Y YD +VIGGG GG+A+AKEAA HGA+V LFDYVKPS+QG+KWG+GGTCVNVGCVPKK+ HY+G +G   K D++A GW F + K  HDW+ L + V+ H   LNF Y  GL+S+ V+YIN L    G ++V+Y  KG    EE
Sbjct:  116 YDYDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYGWKFDNLK--HDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYINGLAKLKGKNTVSYYLKGDLSKEE 257          
BLAST of EWM23080.1 vs. NCBI_GenBank
Match: gi|56525190|emb|CAH79243.1| (Thioredoxin reductase, putative [Plasmodium chabaudi chabaudi])

HSP 1 Score: 171.4 bits (433), Expect = 8.340e-48
Identity = 85/153 (55.56%), Postives = 104/153 (67.97%), Query Frame = 0
Query:   14 NGGSHANPNYTYDLIVIGGGSGGLAAAKEAAKHGAKVALFDYVKPSTQGSKWGLGGTCVNVGCVPKKICHYSGLLGHAIK-DAQALGWTFGDPKPAHDWEGLSSPVRDHRGMLNFLYRRGLQSAHVEYINALTAFTGPHSVTYLPKGKEEGEE 165
            N  S  + NY YD IVIGGG GG+A+AKEAA HGAKV LFD+VKPSTQG+KWG+GGTCVNVGCVPKK+ HY+G +G   K D++  GW   + K  HDW  L S V+ H   LNF Y  GL+S+ V+YIN L      ++V+Y  KG    EE
Sbjct:   22 NKQSMDSSNYDYDYIVIGGGPGGMASAKEAASHGAKVLLFDFVKPSTQGTKWGIGGTCVNVGCVPKKLMHYAGNMGTLFKNDSEKYGWDCDNLK--HDWNKLVSTVQSHIRSLNFSYMVGLKSSKVKYINGLAKLKDKNTVSYYLKGDTSKEE 172          
BLAST of EWM23080.1 vs. NCBI_GenBank
Match: gi|68006556|ref|XP_670412.1| (hypothetical protein [Plasmodium berghei strain ANKA], partial [Plasmodium berghei ANKA] >gi|56485643|emb|CAI03798.1| hypothetical protein PB301363.00.0, partial [Plasmodium berghei])

HSP 1 Score: 162.925 bits (411), Expect = 1.067e-47
Identity = 81/145 (55.86%), Postives = 100/145 (68.97%), Query Frame = 0
Query:   22 NYTYDLIVIGGGSGGLAAAKEAAKHGAKVALFDYVKPSTQGSKWGLGGTCVNVGCVPKKICHYSGLLGHAIK-DAQALGWTFGDPKPAHDWEGLSSPVRDHRGMLNFLYRRGLQSAHVEYINALTAFTGPHSVTYLPKGKEEGEE 165
            NY YD IVIGGG GG+A+AKEAA HGAKV LFD+VKPS+QG+KWG+GGTCVNVGCVPKK+ HY+G +G   K D+   GW   + K  HDW  L S V+ H   LNF Y  GL+S+ V+YIN L      ++V+Y  KG    E+
Sbjct:   41 NYDYDYIVIGGGPGGMASAKEAASHGAKVLLFDFVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGNMGTLFKNDSDKYGWECNNLK--HDWNKLVSTVQSHIRSLNFSYMIGLKSSKVKYINGLAKLKNKNTVSYYLKGDSSKED 183          
BLAST of EWM23080.1 vs. NCBI_GenBank
Match: gi|1068920092|emb|SCN59762.1| (thioredoxin reductase, putative [Plasmodium chabaudi chabaudi])

HSP 1 Score: 172.555 bits (436), Expect = 1.185e-47
Identity = 85/153 (55.56%), Postives = 104/153 (67.97%), Query Frame = 0
Query:   14 NGGSHANPNYTYDLIVIGGGSGGLAAAKEAAKHGAKVALFDYVKPSTQGSKWGLGGTCVNVGCVPKKICHYSGLLGHAIK-DAQALGWTFGDPKPAHDWEGLSSPVRDHRGMLNFLYRRGLQSAHVEYINALTAFTGPHSVTYLPKGKEEGEE 165
            N  S  + NY YD IVIGGG GG+A+AKEAA HGAKV LFD+VKPSTQG+KWG+GGTCVNVGCVPKK+ HY+G +G   K D++  GW   + K  HDW  L S V+ H   LNF Y  GL+S+ V+YIN L      ++V+Y  KG    EE
Sbjct:  118 NKQSMDSSNYDYDYIVIGGGPGGMASAKEAASHGAKVLLFDFVKPSTQGTKWGIGGTCVNVGCVPKKLMHYAGNMGTLFKNDSEKYGWDCDNLK--HDWNKLVSTVQSHIRSLNFSYMVGLKSSKVKYINGLAKLKDKNTVSYYLKGDTSKEE 268          
BLAST of EWM23080.1 vs. NCBI_GenBank
Match: gi|1061787058|emb|SCM21377.1| (thioredoxin reductase, putative [Plasmodium chabaudi chabaudi])

HSP 1 Score: 172.555 bits (436), Expect = 1.185e-47
Identity = 85/153 (55.56%), Postives = 104/153 (67.97%), Query Frame = 0
Query:   14 NGGSHANPNYTYDLIVIGGGSGGLAAAKEAAKHGAKVALFDYVKPSTQGSKWGLGGTCVNVGCVPKKICHYSGLLGHAIK-DAQALGWTFGDPKPAHDWEGLSSPVRDHRGMLNFLYRRGLQSAHVEYINALTAFTGPHSVTYLPKGKEEGEE 165
            N  S  + NY YD IVIGGG GG+A+AKEAA HGAKV LFD+VKPSTQG+KWG+GGTCVNVGCVPKK+ HY+G +G   K D++  GW   + K  HDW  L S V+ H   LNF Y  GL+S+ V+YIN L      ++V+Y  KG    EE
Sbjct:  118 NKQSMDSSNYDYDYIVIGGGPGGMASAKEAASHGAKVLLFDFVKPSTQGTKWGIGGTCVNVGCVPKKLMHYAGNMGTLFKNDSEKYGWDCDNLK--HDWNKLVSTVQSHIRSLNFSYMVGLKSSKVKYINGLAKLKDKNTVSYYLKGDTSKEE 268          
BLAST of EWM23080.1 vs. NCBI_GenBank
Match: gi|1027954390|ref|XP_745009.2| (thioredoxin reductase, putative [Plasmodium chabaudi chabaudi] >gi|675220355|emb|CDR12748.1| thioredoxin reductase, putative [Plasmodium chabaudi chabaudi])

HSP 1 Score: 172.555 bits (436), Expect = 1.185e-47
Identity = 85/153 (55.56%), Postives = 104/153 (67.97%), Query Frame = 0
Query:   14 NGGSHANPNYTYDLIVIGGGSGGLAAAKEAAKHGAKVALFDYVKPSTQGSKWGLGGTCVNVGCVPKKICHYSGLLGHAIK-DAQALGWTFGDPKPAHDWEGLSSPVRDHRGMLNFLYRRGLQSAHVEYINALTAFTGPHSVTYLPKGKEEGEE 165
            N  S  + NY YD IVIGGG GG+A+AKEAA HGAKV LFD+VKPSTQG+KWG+GGTCVNVGCVPKK+ HY+G +G   K D++  GW   + K  HDW  L S V+ H   LNF Y  GL+S+ V+YIN L      ++V+Y  KG    EE
Sbjct:  118 NKQSMDSSNYDYDYIVIGGGPGGMASAKEAASHGAKVLLFDFVKPSTQGTKWGIGGTCVNVGCVPKKLMHYAGNMGTLFKNDSEKYGWDCDNLK--HDWNKLVSTVQSHIRSLNFSYMVGLKSSKVKYINGLAKLKDKNTVSYYLKGDTSKEE 268          
The following BLAST results are available for this feature:
BLAST of EWM23080.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103924|gb|EWM23080.1|5.796e-119100.00thioredoxin reductase [Nannochloropsis gaditana][more]
gi|298713267|emb|CBJ26963.1|2.085e-5461.97Electron donor (NADH / NADPH)-dependent reductase ... [more]
gi|873218434|emb|CEM39538.1|1.455e-5064.79unnamed protein product [Vitrella brassicaformis C... [more]
gi|1084847073|ref|XP_018641987.1|1.497e-4857.64thioredoxin reductase [Plasmodium gaboni] >gi|1011... [more]
gi|641581632|emb|CDO64297.1|2.195e-4856.94thioredoxin reductase [Plasmodium reichenowi][more]
gi|56525190|emb|CAH79243.1|8.340e-4855.56Thioredoxin reductase, putative [Plasmodium chabau... [more]
gi|68006556|ref|XP_670412.1|1.067e-4755.86hypothetical protein [Plasmodium berghei strain AN... [more]
gi|1068920092|emb|SCN59762.1|1.185e-4755.56thioredoxin reductase, putative [Plasmodium chabau... [more]
gi|1061787058|emb|SCM21377.1|1.185e-4755.56thioredoxin reductase, putative [Plasmodium chabau... [more]
gi|1027954390|ref|XP_745009.2|1.185e-4755.56thioredoxin reductase, putative [Plasmodium chabau... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7614rna7614Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications