rna7613, rna7613 (mRNA) Nannochloropsis gaditana

Overview
Namerna7613
Unique Namerna7613
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1069
Alignment locationCM002472.1:377656..378231 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101610g1.8355.mrna
Orig protein idgnl|cribi|Naga_101610g1.8355
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002472.1supercontigCM002472.1:377656..378231 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101610g1gene7371Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7613rna7613-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23079.1cds7593Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7613 ID=rna7613|Name=rna7613|organism=Nannochloropsis gaditana|type=mRNA|length=1069bp
CATGCGTGTAGGAGGCTTTATTGACGGTGCATGCATGGCCGGCATGCCCC
GCGGTGCGGTGTGTGTCGCTTTGCCTTCGTTGTTATACCTCCCTTCTTCC
TCCCCTTCCTCGCCTCAACAGGTCATCCCAGTCTGTGCCCCGAGAGCTAT
AGCTACTTCCAGAGAGAGACAAGCACGCACCCGCGTGCCCACCCATCTCA
TTGCCAAAGCTCCGCCACTCCAAATTTTCCTCACGGGTGTGGCGCGGGGT
CTTTGGGTGTCGCCTCGGGGGGCCTTATTCATTTTGAGCCTTGTCGTTGT
AGGGCTGGCTTTCACTTCCCGGTTGCAACCCTCCCTTGTCGGAGCCCATG
CTCGCTCCTCCAGCTTGCTAACGCAAGGAGGTCGTTCGACGGCAAAAGTG
GGCATGAAAGGGGGGGGTGGAAGGGTGATGGCGGTCCGTGCCGTGAGCAG
GCACGGAGGGAGAGGGGGAGGAAGGGGGGGAGGAAGGGAAGGAAGAAGGG
AAGGAGGACAGACGCTGTGGAGGACAATGTCCGCCTTCGCGGGCGGATGG
GGAAGACAAGGAGGAAAGAGCCTCGTGCCGTTATACGGGCCAAGAGGGAA
GCCCCTGGCTGCCGGGACCGGCTATTCTTTTCCGTCGCCCTATGTGAGGT
GTCCGCTGTGGGCGTTTCCGAGTCAGGAAAAGTCCAGCCTCGCGTACGAA
GGAGGGGAGGGAGGGTGGCGGGACGCAGACACGCCCATCATCCGGAACAG
CCGGTTGAGCGCCGCCCTCCACGCCTCCACCTCCACCTCCACCTCCACCT
CCACCTCCACCTCCACCTCGGCCCCGCCCTCCCCCCCGCCCTCGGAGACC
GCCCTACCTCCCGCCCCCCCTCGTCCCTCGGAGCCGTCTATCCCGGCGTC
TTCGTCTTCTTCTCCTTCGTTGCGGAGGGATGGGGAAGGAGTGGAGGACA
GTTATGCCTGGGTAGGGTACGGGGGATCGGCGCCTGTCAAGCCGATGGGA
GGTCCGGCCCAAGGTGAGTTAAGGTGGGGGAGGATAGTGGGCGGGAAACG
GAGGGGAAGAGGAGAGTAG
back to top

protein sequence of rna7613

>rna7613-protein ID=rna7613-protein|Name=rna7613|organism=Nannochloropsis gaditana|type=polypeptide|length=147bp
VLCPLAPRPTSPSFPPSPPPSFSPSTPSPLPPSPPPLAGQTVHGAPRRWV
RPRRALGQARSGRQNRQELVRSQVRKKCDGGEGGEEGGQGEEGGKEGVGD
EYFRVCTALRRGTKRLLGVGKGGGRDRTEDQTLAAAFIPGERAAAED
back to top

mRNA from alignment at CM002472.1:377656..378231+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7613 ID=rna7613|Name=rna7613|organism=Nannochloropsis gaditana|type=mRNA|length=576bp|location=Sequence derived from alignment at CM002472.1:377656..378231+ (Nannochloropsis gaditana)
gtcctctgccccttggccccccgccccacctcgccctccttccctccttc
cccccctccctccttctctccttccaccccttcccccctccctccttccc
cccctcccttggcagGTCAAACGGTGCATGGAGCACCCAGGCGATGGGTA
CGGCCTAGGAGAGCTCTTGGTCAAGCTCGAAGTGGACGCCAAAATCGCCA
AGAGCTGGTACGAAGCCAAGTAAGAAAAAAATGCgacggcggggaaggag
gggaggagggagggcagggagaggagggaggaaaagagggcgtgggggac
gAGTATTTTCGGGTTTGTACAGCATTGCGGAGGGGAACAAAAAGGCTGCT
GGGTGttgggaagggtggagggagggatagaacGGAGGATCAAACCCTGG
CTGCAGCGTTCATACCGGGGGAACGAGCCGCAGCTGAAGACTGATCTCGG
AACATGGAAACTTAaacaaggaagggcggggaatAGGCCCTACGATACGG
AAAAAGCGCACGAGCAGTGGAGATTGACAGAGAATGAAAGAATTAATGTG
TTGACCGCACCATGTTAAACACCCGG
back to top

Coding sequence (CDS) from alignment at CM002472.1:377656..378231+

>rna7613 ID=rna7613|Name=rna7613|organism=Nannochloropsis gaditana|type=CDS|length=444bp|location=Sequence derived from alignment at CM002472.1:377656..378231+ (Nannochloropsis gaditana)
gtcctctgccccttggccccccgccccacctcgccctccttccctccttc
cccccctccctccttctctccttccaccccttcccccctccctccttccc
cccctcccttggcagGTCAAACGGTGCATGGAGCACCCAGGCGATGGGTA
CGGCCTAGGAGAGCTCTTGGTCAAGCTCGAAGTGGACGCCAAAATCGCCA
AGAGCTGGTACGAAGCCAAGTAAGAAAAAAATGCgacggcggggaaggag
gggaggagggagggcagggagaggagggaggaaaagagggcgtgggggac
gAGTATTTTCGGGTTTGTACAGCATTGCGGAGGGGAACAAAAAGGCTGCT
GGGTGttgggaagggtggagggagggatagaacGGAGGATCAAACCCTGG
CTGCAGCGTTCATACCGGGGGAACGAGCCGCAGCTGAAGACTGA
back to top
Synonyms
Publications