EWM23079.1, cds7593 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM23079.1
Unique Name	cds7593
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002472.1:377656..378099 +

Link to JBrowse

Properties


Property Name	Value
Start range	377656
Start range	.
Protein id	EWM23079.1
Product	hypothetical protein
Partial	true
Orig transcript id	gnl\|cribi\|Naga_101610g1.8355.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002472.1	supercontig	CM002472.1:377656..378099 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

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BLAST of EWM23079.1 vs. NCBI_GenBank
Match: gi|585103923|gb|EWM23079.1| (hypothetical protein Naga_101610g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 286.189 bits (731), Expect = 1.410e-97
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0

Query:    1 VLCPLAPRPTSPSFPPSPPPSFSPSTPSPLPPSPPPLAGQTVHGAPRRWVRPRRALGQARSGRQNRQELVRSQVRKKCDGGEGGEEGGQGEEGGKEGVGDEYFRVCTALRRGTKRLLGVGKGGGRDRTEDQTLAAAFIPGERAAAED 147
            VLCPLAPRPTSPSFPPSPPPSFSPSTPSPLPPSPPPLAGQTVHGAPRRWVRPRRALGQARSGRQNRQELVRSQVRKKCDGGEGGEEGGQGEEGGKEGVGDEYFRVCTALRRGTKRLLGVGKGGGRDRTEDQTLAAAFIPGERAAAED
Sbjct:    1 VLCPLAPRPTSPSFPPSPPPSFSPSTPSPLPPSPPPLAGQTVHGAPRRWVRPRRALGQARSGRQNRQELVRSQVRKKCDGGEGGEEGGQGEEGGKEGVGDEYFRVCTALRRGTKRLLGVGKGGGRDRTEDQTLAAAFIPGERAAAED 147

The following BLAST results are available for this feature:

BLAST of EWM23079.1 vs. NCBI_GenBank

BLAST of EWM23079.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585103923\|gb\|EWM23079.1\|	1.410e-97	100.00	hypothetical protein Naga_101610g1, partial [Nanno...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna7613	rna7613	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications